CircRNA Information

General Information
circRNA Basic Information
CircID chr11:57309179|57309485
Strand +
CircType exon
Host Gene ENSG00000149115.12;
Algorism CIRI2;
Sequence CTGGAAGATGGGGAGATGGGAAAGCGAGGCTGGGTCGGTGAGTTTAGCCTCAGTGTTGGCCCCCAGCGAGAGGCAGCATTTAGCCCAGGGCAGCAGGACTGGAGCCGGGACTTCTGCATCGAGGCCAGTGAGAGGAGCTATCAGTTTGGCATCATTGGCAACGACAGAGTGAGTGGTGCTGGCTTTAGCCCTTCTAGCAAGATGGAAGGTGGTCACTTTGTGCCTCCTGGGAAGACCACAGCTGGCTCGGTGGACTGGACTGACCAGCTGGGTCTCAGGAACTTGGAAGTGTCCAGCTGTGTGGGTT
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr11:57309179|57309485 hsa-miR-29a-5p 0 0 1
chr11:57309179|57309485 hsa-miR-29a-3p 0 0 1
chr11:57309179|57309485 hsa-miR-141-5p 0 0 1
chr11:57309179|57309485 hsa-miR-141-3p 0 0 1
chr11:57309179|57309485 hsa-miR-29c-5p 0 0 1
chr11:57309179|57309485 hsa-miR-29c-3p 0 0 1
chr11:57309179|57309485 hsa-miR-200a-5p 0 0 1
chr11:57309179|57309485 hsa-miR-200a-3p 0 0 1
chr11:57309179|57309485 hsa-miR-370-5p 0 0 1
chr11:57309179|57309485 hsa-miR-370-3p 0 0 1
chr11:57309179|57309485 hsa-miR-193b-5p 0 0 1
chr11:57309179|57309485 hsa-miR-193b-3p 0 0 1
chr11:57309179|57309485 hsa-miR-520g-5p 0 0 1
chr11:57309179|57309485 hsa-miR-520g-3p 0 0 1
chr11:57309179|57309485 hsa-miR-520h 0 1 1
chr11:57309179|57309485 hsa-miR-551a 1 1 1
chr11:57309179|57309485 hsa-miR-551b-5p 0 0 1
chr11:57309179|57309485 hsa-miR-551b-3p 0 0 1
chr11:57309179|57309485 hsa-miR-637 0 0 1
chr11:57309179|57309485 hsa-miR-650 0 0 1
chr11:57309179|57309485 hsa-miR-298 0 0 1
chr11:57309179|57309485 hsa-miR-874-5p 0 0 1
chr11:57309179|57309485 hsa-miR-874-3p 0 0 1
chr11:57309179|57309485 hsa-miR-665 0 1 1
chr11:57309179|57309485 hsa-miR-1200 0 0 1
chr11:57309179|57309485 hsa-miR-1322 0 1 1
chr11:57309179|57309485 hsa-miR-769-5p 0 0 1
chr11:57309179|57309485 hsa-miR-615-3p 1 1 1
chr11:57309179|57309485 hsa-miR-485-5p 0 0 1
chr11:57309179|57309485 hsa-miR-146b-3p 0 0 1
chr11:57309179|57309485 hsa-miR-1207-3p 0 0 1
chr11:57309179|57309485 hsa-miR-455-3p 0 0 1
chr11:57309179|57309485 hsa-miR-193a-3p 0 1 1
chr11:57309179|57309485 hsa-miR-720 0 0 1
chr11:57309179|57309485 hsa-miR-29b 0 0 1
chr11:57309179|57309485 hsa-miR-610 1 0 0
chr11:57309179|57309485 hsa-miR-612 1 1 0
chr11:57309179|57309485 hsa-miR-760 1 0 0
chr11:57309179|57309485 hsa-miR-1913 1 0 0
chr11:57309179|57309485 hsa-miR-3154 0 1 0
chr11:57309179|57309485 hsa-miR-4324 0 1 0
chr11:57309179|57309485 hsa-miR-4268 0 1 0
chr11:57309179|57309485 hsa-miR-4329 0 1 0
chr11:57309179|57309485 hsa-miR-4449 1 0 0
chr11:57309179|57309485 hsa-miR-1587 1 0 0
chr11:57309179|57309485 hsa-miR-3975 0 1 0
chr11:57309179|57309485 hsa-miR-4656 1 0 0
chr11:57309179|57309485 hsa-miR-4672 1 1 0
chr11:57309179|57309485 hsa-miR-6070 0 1 0
chr11:57309179|57309485 hsa-miR-6071 1 0 0
chr11:57309179|57309485 hsa-miR-6131 0 1 0
chr11:57309179|57309485 hsa-miR-12125 0 1 0
chr11:57309179|57309485 hsa-miR-18a-3p 1 1 0
chr11:57309179|57309485 hsa-miR-4731-5p 1 1 0
chr11:57309179|57309485 hsa-miR-4695-5p 0 1 0
chr11:57309179|57309485 hsa-miR-6849-3p 1 1 0
chr11:57309179|57309485 hsa-miR-1915-5p 1 0 0
chr11:57309179|57309485 hsa-miR-4725-5p 1 0 0
chr11:57309179|57309485 hsa-miR-6882-3p 1 1 0
chr11:57309179|57309485 hsa-miR-6858-3p 0 1 0
chr11:57309179|57309485 hsa-miR-4436b-5p 1 0 0
chr11:57309179|57309485 hsa-miR-1343-3p 1 0 0
chr11:57309179|57309485 hsa-miR-4786-3p 0 1 0
chr11:57309179|57309485 hsa-miR-6501-5p 0 1 0
chr11:57309179|57309485 hsa-miR-6809-3p 1 0 0
chr11:57309179|57309485 hsa-miR-4638-3p 0 1 0
chr11:57309179|57309485 hsa-miR-378a-5p 1 0 0
chr11:57309179|57309485 hsa-miR-1304-3p 1 1 0
chr11:57309179|57309485 hsa-miR-3925-3p 0 1 0
chr11:57309179|57309485 hsa-miR-3065-3p 0 1 0
chr11:57309179|57309485 hsa-miR-664b-5p 0 1 0
chr11:57309179|57309485 hsa-miR-6785-3p 1 0 0
chr11:57309179|57309485 hsa-miR-4664-3p 1 0 0
chr11:57309179|57309485 hsa-miR-1910-5p 1 1 0
chr11:57309179|57309485 hsa-miR-3160-5p 1 0 0
chr11:57309179|57309485 hsa-miR-4649-3p 0 1 0
chr11:57309179|57309485 hsa-miR-6760-3p 1 0 0
chr11:57309179|57309485 hsa-miR-3184-3p 1 0 0
chr11:57309179|57309485 hsa-miR-4750-3p 1 0 0
chr11:57309179|57309485 hsa-miR-6838-3p 0 1 0
chr11:57309179|57309485 hsa-miR-6750-3p 0 1 0
chr11:57309179|57309485 hsa-miR-4797-5p 0 1 0
chr11:57309179|57309485 hsa-miR-524-5p 0 1 0
chr11:57309179|57309485 hsa-miR-29b-3p 0 1 0
chr11:57309179|57309485 hsa-miR-338-3p 0 1 0
chr11:57309179|57309485 hsa-miR-3620-5p 1 0 0
chr11:57309179|57309485 hsa-miR-6845-5p 0 1 0
chr11:57309179|57309485 hsa-miR-3085-5p 1 0 0
chr11:57309179|57309485 hsa-miR-10396a-3p 1 0 0
chr11:57309179|57309485 hsa-miR-6791-5p 1 0 0
chr11:57309179|57309485 hsa-miR-6893-3p 1 1 0
chr11:57309179|57309485 hsa-miR-6862-3p 1 0 0
chr11:57309179|57309485 hsa-miR-10401-3p 1 0 0
chr11:57309179|57309485 hsa-miR-10392-3p 1 0 0
chr11:57309179|57309485 hsa-miR-3059-5p 1 0 0
chr11:57309179|57309485 hsa-miR-6511b-3p 1 0 0
chr11:57309179|57309485 hsa-miR-6751-3p 1 0 0
chr11:57309179|57309485 hsa-miR-6819-3p 1 0 0
chr11:57309179|57309485 hsa-miR-5195-3p 1 1 0
chr11:57309179|57309485 hsa-miR-6874-3p 0 1 0
chr11:57309179|57309485 hsa-miR-3922-3p 0 1 0
chr11:57309179|57309485 hsa-miR-125b-5p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr11:57309179|57309485
ORF Type ORF1
Protein Length 102
Nucleotide Length 306
Protein Sequence LEDGEMGKRGWVGEFSLSVGPQREAAFSPGQQDWSRDFCIEASERSYQFGIIGNDRVSGAGFSPSSKMEGGHFVPPGKTTAGSVDWTDQLGLRNLEVSSCVG
Nucleotide Sequence CTGGAAGATGGGGAGATGGGAAAGCGAGGCTGGGTCGGTGAGTTTAGCCTCAGTGTTGGCCCCCAGCGAGAGGCAGCATTTAGCCCAGGGCAGCAGGACTGGAGCCGGGACTTCTGCATCGAGGCCAGTGAGAGGAGCTATCAGTTTGGCATCATTGGCAACGACAGAGTGAGTGGTGCTGGCTTTAGCCCTTCTAGCAAGATGGAAGGTGGTCACTTTGTGCCTCCTGGGAAGACCACAGCTGGCTCGGTGGACTGGACTGACCAGCTGGGTCTCAGGAACTTGGAAGTGTCCAGCTGTGTGGGT
CircID chr11:57309179|57309485
ORF Type ORF2
Protein Length 54
Nucleotide Length 165
Protein Sequence MGRWESEAGSVSLASVLAPSERQHLAQGSRTGAGTSASRPVRGAISLASLATTE
Nucleotide Sequence ATGGGGAGATGGGAAAGCGAGGCTGGGTCGGTGAGTTTAGCCTCAGTGTTGGCCCCCAGCGAGAGGCAGCATTTAGCCCAGGGCAGCAGGACTGGAGCCGGGACTTCTGCATCGAGGCCAGTGAGAGGAGCTATCAGTTTGGCATCATTGGCAACGACAGAGTGA
CircID chr11:57309179|57309485
ORF Type ORF3
Protein Length 43
Nucleotide Length 129
Protein Sequence MALALLARWKVVTLCLLGRPQLARWTGLTSWVSGTWKCPAVWV
Nucleotide Sequence CTGGCTTTAGCCCTTCTAGCAAGATGGAAGGTGGTCACTTTGTGCCTCCTGGGAAGACCACAGCTGGCTCGGTGGACTGGACTGACCAGCTGGGTCTCAGGAACTTGGAAGTGTCCAGCTGTGTGGGTT
CircID chr11:57309179|57309485
ORF Type ORF4
Protein Length 89
Nucleotide Length 267
Protein Sequence MVSPVHRASCGLPRRHKVTTFHLARRAKASTTHSVVANDAKLIAPLTGLDAEVPAPVLLPWAKCCLSLGANTEAKLTDPASLSHLPIFQ
Nucleotide Sequence CTGGTCAGTCCAGTCCACCGAGCCAGCTGTGGTCTTCCCAGGAGGCACAAAGTGACCACCTTCCATCTTGCTAGAAGGGCTAAAGCCAGCACCACTCACTCTGTCGTTGCCAATGATGCCAAACTGATAGCTCCTCTCACTGGCCTCGATGCAGAAGTCCCGGCTCCAGTCCTGCTGCCCTGGGCTAAATGCTGCCTCTCGCTGGGGGCCAACACTGAGGCTAAACTCACCGACCCAGCCTCGCTTTCCCATCTCCCCATCTTCCAG
CircID chr11:57309179|57309485
ORF Type ORF5
Protein Length 27
Nucleotide Length 84
Protein Sequence MDTSKFLRPSWSVQSTEPAVVFPGGTK
Nucleotide Sequence CTGGACACTTCCAAGTTCCTGAGACCCAGCTGGTCAGTCCAGTCCACCGAGCCAGCTGTGGTCTTCCCAGGAGGCACAAAGTGA
CircID chr11:57309179|57309485
ORF Type ORF6
Protein Length 42
Nucleotide Length 126
Protein Sequence MASMQKSRLQSCCPGLNAASRWGPTLRLNSPTQPRFPISPSS
Nucleotide Sequence CTGGCCTCGATGCAGAAGTCCCGGCTCCAGTCCTGCTGCCCTGGGCTAAATGCTGCCTCTCGCTGGGGGCCAACACTGAGGCTAAACTCACCGACCCAGCCTCGCTTTCCCATCTCCCCATCTTCC
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab