CircRNA Information

General Information
circRNA Basic Information
CircID chr11:57467725|57467826
Strand -
CircType exon
Host Gene ENSG00000186907.6;
Algorism CIRI2;
Sequence AACTTCTCCTCTGTGCCGCTGTCCCTGCCACCCAGCACTCAGCGACTCTTCCTGCAGAACAACCTCATCCGCACGCTGCGGCCAGGCACCTTTGGGTCCAAC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr11:57467725|57467826 hsa-miR-18a-5p 0 0 1
chr11:57467725|57467826 hsa-miR-18a-3p 0 0 1
chr11:57467725|57467826 hsa-miR-18b-5p 0 0 1
chr11:57467725|57467826 hsa-miR-18b-3p 0 0 1
chr11:57467725|57467826 hsa-miR-661 0 0 1
chr11:57467725|57467826 hsa-miR-1205 0 0 1
chr11:57467725|57467826 hsa-miR-1286 0 0 1
chr11:57467725|57467826 hsa-miR-1293 0 0 1
chr11:57467725|57467826 hsa-miR-1255a 0 0 1
chr11:57467725|57467826 hsa-miR-512-3p 0 0 1
chr11:57467725|57467826 hsa-miR-1184 0 0 1
chr11:57467725|57467826 hsa-miR-1207-5p 1 1 1
chr11:57467725|57467826 hsa-miR-550 0 0 1
chr11:57467725|57467826 hsa-miR-1255b 0 0 1
chr11:57467725|57467826 hsa-miR-544 0 0 1
chr11:57467725|57467826 hsa-miR-1254 0 0 1
chr11:57467725|57467826 hsa-miR-608 1 0 0
chr11:57467725|57467826 hsa-miR-638 1 0 0
chr11:57467725|57467826 hsa-miR-639 1 0 0
chr11:57467725|57467826 hsa-miR-663a 1 0 0
chr11:57467725|57467826 hsa-miR-1183 1 0 0
chr11:57467725|57467826 hsa-miR-1295a 1 0 0
chr11:57467725|57467826 hsa-miR-3138 1 0 0
chr11:57467725|57467826 hsa-miR-4298 1 0 0
chr11:57467725|57467826 hsa-miR-4270 1 0 0
chr11:57467725|57467826 hsa-miR-3652 1 0 0
chr11:57467725|57467826 hsa-miR-3665 1 0 0
chr11:57467725|57467826 hsa-miR-4430 1 0 0
chr11:57467725|57467826 hsa-miR-4476 1 0 0
chr11:57467725|57467826 hsa-miR-4523 1 0 0
chr11:57467725|57467826 hsa-miR-3960 1 0 0
chr11:57467725|57467826 hsa-miR-4688 1 0 0
chr11:57467725|57467826 hsa-miR-4706 1 0 0
chr11:57467725|57467826 hsa-miR-4734 1 0 0
chr11:57467725|57467826 hsa-miR-5090 1 0 0
chr11:57467725|57467826 hsa-miR-5787 1 0 0
chr11:57467725|57467826 hsa-miR-6086 1 0 0
chr11:57467725|57467826 hsa-miR-7150 1 1 0
chr11:57467725|57467826 hsa-miR-8072 1 0 0
chr11:57467725|57467826 hsa-miR-8073 1 0 0
chr11:57467725|57467826 hsa-miR-8077 0 1 0
chr11:57467725|57467826 hsa-miR-9986 1 0 0
chr11:57467725|57467826 hsa-miR-12128 0 1 0
chr11:57467725|57467826 hsa-miR-211-3p 1 1 0
chr11:57467725|57467826 hsa-miR-766-5p 1 0 0
chr11:57467725|57467826 hsa-miR-3192-5p 1 0 0
chr11:57467725|57467826 hsa-miR-4722-5p 1 0 0
chr11:57467725|57467826 hsa-miR-6741-5p 1 1 0
chr11:57467725|57467826 hsa-miR-6721-5p 1 0 0
chr11:57467725|57467826 hsa-miR-197-5p 1 0 0
chr11:57467725|57467826 hsa-miR-5589-5p 1 0 0
chr11:57467725|57467826 hsa-miR-6776-5p 0 1 0
chr11:57467725|57467826 hsa-miR-7108-5p 1 0 0
chr11:57467725|57467826 hsa-miR-3190-3p 1 0 0
chr11:57467725|57467826 hsa-miR-3126-5p 1 0 0
chr11:57467725|57467826 hsa-miR-486-3p 1 0 0
chr11:57467725|57467826 hsa-miR-2467-3p 1 0 0
chr11:57467725|57467826 hsa-miR-6850-5p 1 0 0
chr11:57467725|57467826 hsa-miR-885-3p 1 0 0
chr11:57467725|57467826 hsa-miR-1908-5p 1 1 0
chr11:57467725|57467826 hsa-miR-92b-5p 1 0 0
chr11:57467725|57467826 hsa-miR-3648 1 0 0
chr11:57467725|57467826 hsa-miR-149-3p 1 0 0
chr11:57467725|57467826 hsa-miR-6886-5p 1 0 0
chr11:57467725|57467826 hsa-miR-6877-5p 1 0 0
chr11:57467725|57467826 hsa-miR-6895-5p 1 0 0
chr11:57467725|57467826 hsa-miR-4707-5p 1 0 0
chr11:57467725|57467826 hsa-miR-10400-5p 1 0 0
chr11:57467725|57467826 hsa-miR-1233-5p 1 0 0
chr11:57467725|57467826 hsa-miR-4763-3p 1 1 0
chr11:57467725|57467826 hsa-miR-6769b-5p 1 0 0
chr11:57467725|57467826 hsa-miR-6787-5p 1 0 0
chr11:57467725|57467826 hsa-miR-6743-5p 1 0 0
chr11:57467725|57467826 hsa-miR-6754-5p 1 0 0
chr11:57467725|57467826 hsa-miR-6756-5p 1 0 0
chr11:57467725|57467826 hsa-miR-6803-5p 1 0 0
chr11:57467725|57467826 hsa-miR-6722-3p 1 0 0
chr11:57467725|57467826 hsa-miR-6751-5p 1 0 0
chr11:57467725|57467826 hsa-miR-6808-5p 1 0 0
chr11:57467725|57467826 hsa-miR-186-3p 0 1 0
chr11:57467725|57467826 hsa-miR-6836-5p 1 0 0
chr11:57467725|57467826 hsa-miR-10396b-5p 1 0 0
chr11:57467725|57467826 hsa-miR-1909-3p 1 0 0
chr11:57467725|57467826 hsa-miR-328-5p 1 0 0
chr11:57467725|57467826 hsa-miR-4749-5p 1 1 0
chr11:57467725|57467826 hsa-miR-6795-5p 1 0 0
chr11:57467725|57467826 hsa-miR-6887-5p 1 0 0
chr11:57467725|57467826 hsa-miR-6731-5p 1 0 0
chr11:57467725|57467826 hsa-miR-6855-5p 1 0 0
chr11:57467725|57467826 hsa-miR-6790-5p 1 0 0
chr11:57467725|57467826 hsa-miR-6724-5p 1 0 0
chr11:57467725|57467826 hsa-miR-323b-5p 1 0 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr11:57467725|57467826
ORF Type ORF1
Protein Length 28
Nucleotide Length 84
Protein Sequence MSLPPSTQRLFLQNNLIRTLRPGTFGSN
Nucleotide Sequence CTGTCCCTGCCACCCAGCACTCAGCGACTCTTCCTGCAGAACAACCTCATCCGCACGCTGCGGCCAGGCACCTTTGGGTCCAAC
CircID chr11:57467725|57467826
ORF Type ORF2
Protein Length 30
Nucleotide Length 90
Protein Sequence MCRCPCHPALSDSSCRTTSSARCGQAPLGP
Nucleotide Sequence CTGTGCCGCTGTCCCTGCCACCCAGCACTCAGCGACTCTTCCTGCAGAACAACCTCATCCGCACGCTGCGGCCAGGCACCTTTGGGTCCA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab