CircRNA Information

General Information
circRNA Basic Information
CircID chr11:57818147|57818355
Strand -
CircType exon
Host Gene ENSG00000198561.11;
Algorism CIRI2;
Sequence CTGGCTCCACTCTTGATCTCTCTTGTCCTCTTCTGCTCTTTTCCTGGTGCTCTTTTTTCTCGGTGGGGTGTGGGTAATAGAACAGCCGTGGGCTTTTGGGGACCTTTAACTTTTTTTTCTCTCTTTTGTTTATAAAAAACACTAAACATTCAATTCCAGAGAACCAAAAATCCCACCTTCCCACCGAACACTACTAAGGGGCTTGTGTT
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr11:57818147|57818355 hsa-miR-29a-5p 0 0 1
chr11:57818147|57818355 hsa-miR-29a-3p 0 0 1
chr11:57818147|57818355 hsa-miR-29c-5p 0 0 1
chr11:57818147|57818355 hsa-miR-29c-3p 0 0 1
chr11:57818147|57818355 hsa-miR-340-5p 0 0 1
chr11:57818147|57818355 hsa-miR-340-3p 0 0 1
chr11:57818147|57818355 hsa-miR-326 0 0 1
chr11:57818147|57818355 hsa-miR-335-5p 0 0 1
chr11:57818147|57818355 hsa-miR-335-3p 0 0 1
chr11:57818147|57818355 hsa-miR-659-5p 0 0 1
chr11:57818147|57818355 hsa-miR-659-3p 0 0 1
chr11:57818147|57818355 hsa-miR-298 0 0 1
chr11:57818147|57818355 hsa-miR-1290 0 0 1
chr11:57818147|57818355 hsa-miR-1299 0 0 1
chr11:57818147|57818355 hsa-miR-548m 0 0 1
chr11:57818147|57818355 hsa-miR-1276 0 0 1
chr11:57818147|57818355 hsa-miR-875-3p 0 0 1
chr11:57818147|57818355 hsa-miR-1244 0 0 1
chr11:57818147|57818355 hsa-miR-330-5p 0 0 1
chr11:57818147|57818355 hsa-miR-142-3p 0 0 1
chr11:57818147|57818355 hsa-miR-556-3p 0 0 1
chr11:57818147|57818355 hsa-miR-1280 0 0 1
chr11:57818147|57818355 hsa-miR-29b 0 0 1
chr11:57818147|57818355 hsa-miR-583 1 0 0
chr11:57818147|57818355 hsa-miR-3916 1 0 0
chr11:57818147|57818355 hsa-miR-4468 1 0 0
chr11:57818147|57818355 hsa-miR-4644 1 0 0
chr11:57818147|57818355 hsa-miR-6124 1 0 0
chr11:57818147|57818355 hsa-miR-1247-3p 1 0 0
chr11:57818147|57818355 hsa-miR-671-5p 1 0 0
chr11:57818147|57818355 hsa-miR-125a-3p 1 0 0
chr11:57818147|57818355 hsa-miR-6510-5p 1 0 0
chr11:57818147|57818355 hsa-miR-7847-3p 1 0 0
chr11:57818147|57818355 hsa-miR-6746-5p 1 0 0
chr11:57818147|57818355 hsa-miR-874-5p 1 0 0
chr11:57818147|57818355 hsa-miR-3126-5p 1 0 0
chr11:57818147|57818355 hsa-miR-6760-5p 1 0 0
chr11:57818147|57818355 hsa-miR-2467-3p 1 0 0
chr11:57818147|57818355 hsa-miR-6786-5p 1 0 0
chr11:57818147|57818355 hsa-miR-4640-5p 1 0 0
chr11:57818147|57818355 hsa-miR-6753-5p 1 0 0
chr11:57818147|57818355 hsa-miR-30c-2-3p 1 0 0
chr11:57818147|57818355 hsa-miR-6847-5p 1 0 0
chr11:57818147|57818355 hsa-miR-6878-5p 1 0 0
chr11:57818147|57818355 hsa-miR-3065-3p 1 0 0
chr11:57818147|57818355 hsa-miR-6832-5p 1 0 0
chr11:57818147|57818355 hsa-miR-6769b-5p 1 0 0
chr11:57818147|57818355 hsa-miR-6779-5p 1 0 0
chr11:57818147|57818355 hsa-miR-6797-5p 1 0 0
chr11:57818147|57818355 hsa-miR-6879-5p 1 0 0
chr11:57818147|57818355 hsa-miR-4726-5p 1 0 0
chr11:57818147|57818355 hsa-miR-6735-5p 1 0 0
chr11:57818147|57818355 hsa-miR-6883-5p 1 0 0
chr11:57818147|57818355 hsa-miR-6731-5p 1 0 0
chr11:57818147|57818355 hsa-miR-6856-5p 1 0 0
chr11:57818147|57818355 hsa-miR-6785-5p 1 0 0
chr11:57818147|57818355 hsa-miR-6849-5p 1 0 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr11:57818147|57818355
ORF Type ORF1
Protein Length 44
Nucleotide Length 135
Protein Sequence LAPLLISLVLFCSFPGALFSRWGVGNRTAVGFWGPLTFFSLFCL
Nucleotide Sequence CTGGCTCCACTCTTGATCTCTCTTGTCCTCTTCTGCTCTTTTCCTGGTGCTCTTTTTTCTCGGTGGGGTGTGGGTAATAGAACAGCCGTGGGCTTTTGGGGACCTTTAACTTTTTTTTCTCTCTTTTGTTTATAA
CircID chr11:57818147|57818355
ORF Type ORF2
Protein Length 28
Nucleotide Length 87
Protein Sequence MSSSALFLVLFFLGGVWVIEQPWAFGDL
Nucleotide Sequence TTGTCCTCTTCTGCTCTTTTCCTGGTGCTCTTTTTTCTCGGTGGGGTGTGGGTAATAGAACAGCCGTGGGCTTTTGGGGACCTTTAA
CircID chr11:57818147|57818355
ORF Type ORF3
Protein Length 33
Nucleotide Length 102
Protein Sequence MGTFNFFFSLLFIKNTKHSIPENQKSHLPTEHY
Nucleotide Sequence TTGGGGACCTTTAACTTTTTTTTCTCTCTTTTGTTTATAAAAAACACTAAACATTCAATTCCAGAGAACCAAAAATCCCACCTTCCCACCGAACACTACTAA
CircID chr11:57818147|57818355
ORF Type ORF4
Protein Length 49
Nucleotide Length 147
Protein Sequence MFSVFYKQKREKKVKGPQKPTAVLLPTPHREKRAPGKEQKRTREIKSGA
Nucleotide Sequence ATGTTTAGTGTTTTTTATAAACAAAAGAGAGAAAAAAAAGTTAAAGGTCCCCAAAAGCCCACGGCTGTTCTATTACCCACACCCCACCGAGAAAAAAGAGCACCAGGAAAAGAGCAGAAGAGGACAAGAGAGATCAAGAGTGGAGCC
CircID chr11:57818147|57818355
ORF Type ORF5
Protein Length 28
Nucleotide Length 84
Protein Sequence MFYYPHPTEKKEHQEKSRRGQERSRVEP
Nucleotide Sequence CTGTTCTATTACCCACACCCCACCGAGAAAAAAGAGCACCAGGAAAAGAGCAGAAGAGGACAAGAGAGATCAAGAGTGGAGCCA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab