CircRNA Information

General Information
circRNA Basic Information
CircID chr11:60898216|60898593
Strand +
CircType exon
Host Gene ENSG00000110107.7;
Algorism CIRI2;
Sequence TCATCTTTGGAACAGGAACCATGGACTCTCAGATCAAGATCTGGGACTTGAAGGTAGGACATGGTAGGCCTCCATCTGAGGCCCAGGGCCAGAGGGAGTGTTTGTGACAATGCAGTGCTAATTAGGTGCTTGTGGCACCTGGCCCTGAAGGTGGAGAGACACTGGCTGTGCGTGTGTGATATGATGGTGTGGTCTGGGGGGTCCCGCTGGCTGTCCTTCCTGGAAGGACGTGAGGGACATCTCAGGTAGGAGTTTGGTGAGCCCCATTTTCTTCCTCTCATGATCTGTGGGTGACGTATTTTACTACCCACCGCCACTGTAGGAACGTACTAATGTGGCCAACTTCCCTGGCCACTCGGGCCCCATCACTAGCATCGC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr11:60898216|60898593 hsa-miR-26b-5p 0 0 1
chr11:60898216|60898593 hsa-miR-26b-3p 0 0 1
chr11:60898216|60898593 hsa-miR-33a-5p 0 0 1
chr11:60898216|60898593 hsa-miR-33a-3p 0 0 1
chr11:60898216|60898593 hsa-miR-217-5p 0 0 1
chr11:60898216|60898593 hsa-miR-217-3p 0 0 1
chr11:60898216|60898593 hsa-miR-143-5p 0 0 1
chr11:60898216|60898593 hsa-miR-143-3p 0 0 1
chr11:60898216|60898593 hsa-miR-377-5p 0 0 1
chr11:60898216|60898593 hsa-miR-377-3p 0 0 1
chr11:60898216|60898593 hsa-miR-328-5p 0 0 1
chr11:60898216|60898593 hsa-miR-328-3p 0 0 1
chr11:60898216|60898593 hsa-miR-575 0 0 1
chr11:60898216|60898593 hsa-miR-588 0 1 1
chr11:60898216|60898593 hsa-miR-593-5p 0 0 1
chr11:60898216|60898593 hsa-miR-593-3p 0 0 1
chr11:60898216|60898593 hsa-miR-598-5p 0 0 1
chr11:60898216|60898593 hsa-miR-598-3p 0 0 1
chr11:60898216|60898593 hsa-miR-33b-5p 0 0 1
chr11:60898216|60898593 hsa-miR-33b-3p 0 0 1
chr11:60898216|60898593 hsa-miR-650 0 0 1
chr11:60898216|60898593 hsa-miR-665 0 0 1
chr11:60898216|60898593 hsa-miR-1227-5p 0 0 1
chr11:60898216|60898593 hsa-miR-1227-3p 0 0 1
chr11:60898216|60898593 hsa-miR-1291 0 0 1
chr11:60898216|60898593 hsa-miR-1297 0 0 1
chr11:60898216|60898593 hsa-miR-139-5p 0 1 1
chr11:60898216|60898593 hsa-miR-199a-5p 0 1 1
chr11:60898216|60898593 hsa-miR-361-3p 0 0 1
chr11:60898216|60898593 hsa-miR-199b-5p 0 1 1
chr11:60898216|60898593 hsa-miR-642 0 0 1
chr11:60898216|60898593 hsa-miR-26a 0 0 1
chr11:60898216|60898593 hsa-miR-1245 0 0 1
chr11:60898216|60898593 hsa-miR-571 0 1 0
chr11:60898216|60898593 hsa-miR-663a 1 0 0
chr11:60898216|60898593 hsa-miR-764 0 1 0
chr11:60898216|60898593 hsa-miR-2861 1 0 0
chr11:60898216|60898593 hsa-miR-4324 0 1 0
chr11:60898216|60898593 hsa-miR-4271 1 1 0
chr11:60898216|60898593 hsa-miR-4292 0 1 0
chr11:60898216|60898593 hsa-miR-4330 0 1 0
chr11:60898216|60898593 hsa-miR-3916 1 1 0
chr11:60898216|60898593 hsa-miR-3918 0 1 0
chr11:60898216|60898593 hsa-miR-4440 1 0 0
chr11:60898216|60898593 hsa-miR-4469 0 1 0
chr11:60898216|60898593 hsa-miR-4476 0 1 0
chr11:60898216|60898593 hsa-miR-4533 0 1 0
chr11:60898216|60898593 hsa-miR-4656 1 0 0
chr11:60898216|60898593 hsa-miR-4739 1 1 0
chr11:60898216|60898593 hsa-miR-5093 0 1 0
chr11:60898216|60898593 hsa-miR-5694 0 1 0
chr11:60898216|60898593 hsa-miR-6088 1 0 0
chr11:60898216|60898593 hsa-miR-6133 1 0 0
chr11:60898216|60898593 hsa-miR-8080 0 1 0
chr11:60898216|60898593 hsa-miR-9500 0 1 0
chr11:60898216|60898593 hsa-miR-1843 0 1 0
chr11:60898216|60898593 hsa-miR-6734-5p 1 0 0
chr11:60898216|60898593 hsa-miR-7155-5p 1 0 0
chr11:60898216|60898593 hsa-miR-218-2-3p 0 1 0
chr11:60898216|60898593 hsa-miR-7106-5p 1 0 0
chr11:60898216|60898593 hsa-miR-6894-5p 1 0 0
chr11:60898216|60898593 hsa-miR-1972 1 0 0
chr11:60898216|60898593 hsa-miR-20a-3p 0 1 0
chr11:60898216|60898593 hsa-miR-6089 1 0 0
chr11:60898216|60898593 hsa-miR-3677-5p 0 1 0
chr11:60898216|60898593 hsa-miR-6873-3p 0 1 0
chr11:60898216|60898593 hsa-miR-122-3p 1 1 0
chr11:60898216|60898593 hsa-miR-4697-3p 0 1 0
chr11:60898216|60898593 hsa-miR-221-3p 1 0 0
chr11:60898216|60898593 hsa-miR-6786-5p 1 1 0
chr11:60898216|60898593 hsa-miR-939-3p 0 1 0
chr11:60898216|60898593 hsa-miR-4640-5p 1 1 0
chr11:60898216|60898593 hsa-miR-3127-5p 0 1 0
chr11:60898216|60898593 hsa-miR-7161-3p 0 1 0
chr11:60898216|60898593 hsa-miR-6749-5p 1 0 0
chr11:60898216|60898593 hsa-miR-4715-5p 0 1 0
chr11:60898216|60898593 hsa-miR-6781-5p 1 0 0
chr11:60898216|60898593 hsa-miR-3189-3p 0 1 0
chr11:60898216|60898593 hsa-miR-6895-5p 0 1 0
chr11:60898216|60898593 hsa-miR-1250-5p 1 1 0
chr11:60898216|60898593 hsa-miR-670-3p 0 1 0
chr11:60898216|60898593 hsa-miR-2276-5p 0 1 0
chr11:60898216|60898593 hsa-miR-6895-3p 0 1 0
chr11:60898216|60898593 hsa-miR-6856-3p 1 0 0
chr11:60898216|60898593 hsa-miR-4283 0 1 0
chr11:60898216|60898593 hsa-miR-6761-5p 0 1 0
chr11:60898216|60898593 hsa-miR-4802-5p 0 1 0
chr11:60898216|60898593 hsa-miR-6769b-5p 0 1 0
chr11:60898216|60898593 hsa-miR-6756-5p 1 0 0
chr11:60898216|60898593 hsa-miR-6769a-5p 0 1 0
chr11:60898216|60898593 hsa-miR-6780a-5p 0 1 0
chr11:60898216|60898593 hsa-miR-6836-5p 1 0 0
chr11:60898216|60898593 hsa-miR-10396b-5p 1 0 0
chr11:60898216|60898593 hsa-miR-4726-5p 1 1 0
chr11:60898216|60898593 hsa-miR-6738-5p 1 0 0
chr11:60898216|60898593 hsa-miR-6848-5p 1 0 0
chr11:60898216|60898593 hsa-miR-6511a-5p 1 0 0
chr11:60898216|60898593 hsa-miR-6856-5p 1 0 0
chr11:60898216|60898593 hsa-miR-6876-5p 0 1 0
chr11:60898216|60898593 hsa-miR-6724-5p 1 0 0
chr11:60898216|60898593 hsa-miR-6791-5p 0 1 0
chr11:60898216|60898593 hsa-miR-6762-5p 1 0 0
chr11:60898216|60898593 hsa-miR-6511a-3p 0 1 0
chr11:60898216|60898593 hsa-miR-6775-3p 0 1 0
chr11:60898216|60898593 hsa-miR-6511b-3p 0 1 0
chr11:60898216|60898593 hsa-miR-6859-5p 1 1 0
chr11:60898216|60898593 hsa-miR-330-5p 0 1 0
chr11:60898216|60898593 hsa-miR-6807-3p 1 0 0
chr11:60898216|60898593 hsa-miR-122b-3p 1 1 0
chr11:60898216|60898593 hsa-miR-6834-3p 0 1 0
chr11:60898216|60898593 hsa-miR-487a-3p 0 1 0
chr11:60898216|60898593 hsa-miR-498-3p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

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circRNA Open Reading Frame (ORF)
CircID chr11:60898216|60898593
ORF Type ORF1
Protein Length 62
Nucleotide Length 189
Protein Sequence MVGLHLRPRARGSVCDNAVLIRCLWHLALKVERHWLCVCDMMVWSGGSRWLSFLEGREGHLR
Nucleotide Sequence ATGGTAGGCCTCCATCTGAGGCCCAGGGCCAGAGGGAGTGTTTGTGACAATGCAGTGCTAATTAGGTGCTTGTGGCACCTGGCCCTGAAGGTGGAGAGACACTGGCTGTGCGTGTGTGATATGATGGTGTGGTCTGGGGGGTCCCGCTGGCTGTCCTTCCTGGAAGGACGTGAGGGACATCTCAGGTAG
CircID chr11:60898216|60898593
ORF Type ORF2
Protein Length 29
Nucleotide Length 90
Protein Sequence MGGPAGCPSWKDVRDISGRSLVSPIFFLS
Nucleotide Sequence CTGGGGGGTCCCGCTGGCTGTCCTTCCTGGAAGGACGTGAGGGACATCTCAGGTAGGAGTTTGGTGAGCCCCATTTTCTTCCTCTCATGA
CircID chr11:60898216|60898593
ORF Type ORF3
Protein Length 28
Nucleotide Length 87
Protein Sequence MDSQIKIWDLKVGHGRPPSEAQGQRECL
Nucleotide Sequence ATGGACTCTCAGATCAAGATCTGGGACTTGAAGGTAGGACATGGTAGGCCTCCATCTGAGGCCCAGGGCCAGAGGGAGTGTTTGTGA
CircID chr11:60898216|60898593
ORF Type ORF4
Protein Length 31
Nucleotide Length 93
Protein Sequence MWVTYFTTHRHCRNVLMWPTSLATRAPSLAS
Nucleotide Sequence CTGTGGGTGACGTATTTTACTACCCACCGCCACTGTAGGAACGTACTAATGTGGCCAACTTCCCTGGCCACTCGGGCCCCATCACTAGCATCG
CircID chr11:60898216|60898593
ORF Type ORF5
Protein Length 49
Nucleotide Length 150
Protein Sequence MGLTKLLPEMSLTSFQEGQPAGPPRPHHHITHAQPVSLHLQGQVPQAPN
Nucleotide Sequence ATGGGGCTCACCAAACTCCTACCTGAGATGTCCCTCACGTCCTTCCAGGAAGGACAGCCAGCGGGACCCCCCAGACCACACCATCATATCACACACGCACAGCCAGTGTCTCTCCACCTTCAGGGCCAGGTGCCACAAGCACCTAATTAG
CircID chr11:60898216|60898593
ORF Type ORF6
Protein Length 93
Nucleotide Length 279
Protein Sequence MRGRKWGSPNSYLRCPSRPSRKDSQRDPPDHTIISHTHSQCLSTFRARCHKHLISTALSQTLPLALGLRWRPTMSYLQVPDLDLRVHGSCSKD
Nucleotide Sequence ATGAGAGGAAGAAAATGGGGCTCACCAAACTCCTACCTGAGATGTCCCTCACGTCCTTCCAGGAAGGACAGCCAGCGGGACCCCCCAGACCACACCATCATATCACACACGCACAGCCAGTGTCTCTCCACCTTCAGGGCCAGGTGCCACAAGCACCTAATTAGCACTGCATTGTCACAAACACTCCCTCTGGCCCTGGGCCTCAGATGGAGGCCTACCATGTCCTACCTTCAAGTCCCAGATCTTGATCTGAGAGTCCATGGTTCCTGTTCCAAAGAT
CircID chr11:60898216|60898593
ORF Type ORF7
Protein Length 28
Nucleotide Length 87
Protein Sequence MHCHKHSLWPWASDGGLPCPTFKSQILI
Nucleotide Sequence CTGCATTGTCACAAACACTCCCTCTGGCCCTGGGCCTCAGATGGAGGCCTACCATGTCCTACCTTCAAGTCCCAGATCTTGATCTGA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab