CircRNA Information

General Information
circRNA Basic Information
CircID chr11:609423|609614
Strand +
CircType exon
Host Gene ENSG00000070047.10;
Algorism CIRI2;
Sequence CTCCTCAGGCCGGGCTGCCTCCTGTACCCTCCCACTCGCAGAGGGGCTGTCTTCCTTCCCCGCAGGCGCCACATCCGGGGAACTGGGTGCCTCAGCCTTCTCAGCCGCGTCCGGCCTGAGCAAATGTGGCTCCTGGGTGCCCTCTGGCAGGGGTGGGGGCTGCGAAGGGTCTTCATCGTGCATCAATGACAC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr11:609423|609614 hsa-miR-616-5p 0 0 1
chr11:609423|609614 hsa-miR-616-3p 0 0 1
chr11:609423|609614 hsa-miR-650 1 0 1
chr11:609423|609614 hsa-miR-744-5p 0 0 1
chr11:609423|609614 hsa-miR-744-3p 0 0 1
chr11:609423|609614 hsa-miR-665 1 0 1
chr11:609423|609614 hsa-miR-1178-5p 0 0 1
chr11:609423|609614 hsa-miR-1178-3p 0 0 1
chr11:609423|609614 hsa-miR-1234-3p 0 0 1
chr11:609423|609614 hsa-miR-1253 0 0 1
chr11:609423|609614 hsa-miR-1252-5p 0 0 1
chr11:609423|609614 hsa-miR-1252-3p 0 0 1
chr11:609423|609614 hsa-miR-1827 0 0 1
chr11:609423|609614 hsa-miR-1234 0 0 1
chr11:609423|609614 hsa-miR-566 0 0 1
chr11:609423|609614 hsa-miR-7 0 0 1
chr11:609423|609614 hsa-miR-1300 0 0 1
chr11:609423|609614 hsa-miR-608 1 0 0
chr11:609423|609614 hsa-miR-611 1 0 0
chr11:609423|609614 hsa-miR-663a 1 0 0
chr11:609423|609614 hsa-miR-1260a 0 1 0
chr11:609423|609614 hsa-miR-3132 1 0 0
chr11:609423|609614 hsa-miR-1260b 0 1 0
chr11:609423|609614 hsa-miR-4271 0 1 0
chr11:609423|609614 hsa-miR-3621 1 0 0
chr11:609423|609614 hsa-miR-3943 0 1 0
chr11:609423|609614 hsa-miR-4481 0 1 0
chr11:609423|609614 hsa-miR-4493 0 1 0
chr11:609423|609614 hsa-miR-4533 0 1 0
chr11:609423|609614 hsa-miR-4651 1 0 0
chr11:609423|609614 hsa-miR-4654 1 0 0
chr11:609423|609614 hsa-miR-4656 1 0 0
chr11:609423|609614 hsa-miR-4688 1 0 0
chr11:609423|609614 hsa-miR-4706 1 0 0
chr11:609423|609614 hsa-miR-4734 1 0 0
chr11:609423|609614 hsa-miR-4739 1 0 0
chr11:609423|609614 hsa-miR-4751 1 0 0
chr11:609423|609614 hsa-miR-4767 1 0 0
chr11:609423|609614 hsa-miR-5090 1 0 0
chr11:609423|609614 hsa-miR-5787 1 0 0
chr11:609423|609614 hsa-miR-6068 1 0 0
chr11:609423|609614 hsa-miR-105-3p 0 1 0
chr11:609423|609614 hsa-miR-7-5p 0 1 0
chr11:609423|609614 hsa-miR-500b-3p 0 1 0
chr11:609423|609614 hsa-miR-4665-3p 1 0 0
chr11:609423|609614 hsa-miR-6765-5p 1 0 0
chr11:609423|609614 hsa-miR-671-5p 1 0 0
chr11:609423|609614 hsa-miR-6825-5p 1 0 0
chr11:609423|609614 hsa-miR-6854-5p 1 0 0
chr11:609423|609614 hsa-miR-6799-5p 1 0 0
chr11:609423|609614 hsa-miR-6728-5p 1 0 0
chr11:609423|609614 hsa-miR-6089 1 0 0
chr11:609423|609614 hsa-miR-1225-3p 1 0 0
chr11:609423|609614 hsa-miR-4695-5p 1 0 0
chr11:609423|609614 hsa-miR-4722-5p 1 0 0
chr11:609423|609614 hsa-miR-197-5p 1 0 0
chr11:609423|609614 hsa-miR-7108-5p 1 0 0
chr11:609423|609614 hsa-miR-6748-5p 1 0 0
chr11:609423|609614 hsa-miR-4697-3p 1 0 0
chr11:609423|609614 hsa-miR-3190-3p 1 0 0
chr11:609423|609614 hsa-miR-6805-5p 1 0 0
chr11:609423|609614 hsa-miR-6770-5p 0 1 0
chr11:609423|609614 hsa-miR-3934-3p 1 0 0
chr11:609423|609614 hsa-miR-7109-5p 1 0 0
chr11:609423|609614 hsa-miR-1226-5p 1 0 0
chr11:609423|609614 hsa-miR-4763-5p 1 0 0
chr11:609423|609614 hsa-miR-204-3p 0 1 0
chr11:609423|609614 hsa-miR-2277-3p 1 0 0
chr11:609423|609614 hsa-miR-4743-5p 1 0 0
chr11:609423|609614 hsa-miR-149-3p 1 0 0
chr11:609423|609614 hsa-miR-3616-3p 0 1 0
chr11:609423|609614 hsa-miR-550b-2-5p 1 0 0
chr11:609423|609614 hsa-miR-2276-3p 1 0 0
chr11:609423|609614 hsa-miR-6769a-3p 0 1 0
chr11:609423|609614 hsa-miR-4707-5p 1 0 0
chr11:609423|609614 hsa-miR-6720-3p 1 0 0
chr11:609423|609614 hsa-miR-6871-3p 1 0 0
chr11:609423|609614 hsa-miR-6886-3p 1 0 0
chr11:609423|609614 hsa-miR-4649-3p 0 1 0
chr11:609423|609614 hsa-miR-2277-5p 1 0 0
chr11:609423|609614 hsa-miR-6851-3p 1 0 0
chr11:609423|609614 hsa-miR-6841-5p 0 1 0
chr11:609423|609614 hsa-miR-10400-5p 1 0 0
chr11:609423|609614 hsa-miR-1207-5p 1 0 0
chr11:609423|609614 hsa-miR-1233-5p 1 0 0
chr11:609423|609614 hsa-miR-1273h-5p 1 0 0
chr11:609423|609614 hsa-miR-4763-3p 1 0 0
chr11:609423|609614 hsa-miR-6769b-5p 1 0 0
chr11:609423|609614 hsa-miR-6778-5p 1 0 0
chr11:609423|609614 hsa-miR-1343-5p 1 0 0
chr11:609423|609614 hsa-miR-6737-5p 1 0 0
chr11:609423|609614 hsa-miR-6756-5p 1 0 0
chr11:609423|609614 hsa-miR-6769a-5p 1 0 0
chr11:609423|609614 hsa-miR-6803-5p 1 0 0
chr11:609423|609614 hsa-miR-6815-5p 1 0 0
chr11:609423|609614 hsa-miR-7107-5p 0 1 0
chr11:609423|609614 hsa-miR-1249-5p 1 0 0
chr11:609423|609614 hsa-miR-6751-5p 1 0 0
chr11:609423|609614 hsa-miR-6779-5p 1 0 0
chr11:609423|609614 hsa-miR-6780a-5p 1 0 0
chr11:609423|609614 hsa-miR-7111-5p 1 0 0
chr11:609423|609614 hsa-miR-4728-5p 1 0 0
chr11:609423|609614 hsa-miR-6780b-5p 0 1 0
chr11:609423|609614 hsa-miR-328-5p 1 0 0
chr11:609423|609614 hsa-miR-4649-5p 1 0 0
chr11:609423|609614 hsa-miR-4725-3p 0 1 0
chr11:609423|609614 hsa-miR-4745-5p 1 0 0
chr11:609423|609614 hsa-miR-4749-5p 0 1 0
chr11:609423|609614 hsa-miR-6795-5p 1 0 0
chr11:609423|609614 hsa-miR-6883-5p 1 0 0
chr11:609423|609614 hsa-miR-1238-5p 1 0 0
chr11:609423|609614 hsa-miR-4758-5p 1 0 0
chr11:609423|609614 hsa-miR-4747-5p 0 1 0
chr11:609423|609614 hsa-miR-6766-5p 1 0 0
chr11:609423|609614 hsa-miR-550a-5p 1 0 0
chr11:609423|609614 hsa-miR-6801-3p 0 1 0
chr11:609423|609614 hsa-miR-3130-5p 0 1 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr11:609423|609614
ORF Type ORF1
Protein Length 55
Nucleotide Length 168
Protein Sequence MYPPTRRGAVFLPRRRHIRGTGCLSLLSRVRPEQMWLLGALWQGWGLRRVFIVHQ
Nucleotide Sequence CTGTACCCTCCCACTCGCAGAGGGGCTGTCTTCCTTCCCCGCAGGCGCCACATCCGGGGAACTGGGTGCCTCAGCCTTCTCAGCCGCGTCCGGCCTGAGCAAATGTGGCTCCTGGGTGCCCTCTGGCAGGGGTGGGGGCTGCGAAGGGTCTTCATCGTGCATCAATGA
CircID chr11:609423|609614
ORF Type ORF2
Protein Length 48
Nucleotide Length 144
Protein Sequence MSSFPAGATSGELGASAFSAASGLSKCGSWVPSGRGGGCEGSSSCIND
Nucleotide Sequence CTGTCTTCCTTCCCCGCAGGCGCCACATCCGGGGAACTGGGTGCCTCAGCCTTCTCAGCCGCGTCCGGCCTGAGCAAATGTGGCTCCTGGGTGCCCTCTGGCAGGGGTGGGGGCTGCGAAGGGTCTTCATCGTGCATCAATGAC
CircID chr11:609423|609614
ORF Type ORF3
Protein Length 34
Nucleotide Length 105
Protein Sequence MPPVPSHSQRGCLPSPQAPHPGNWVPQPSQPRPA
Nucleotide Sequence CTGCCTCCTGTACCCTCCCACTCGCAGAGGGGCTGTCTTCCTTCCCCGCAGGCGCCACATCCGGGGAACTGGGTGCCTCAGCCTTCTCAGCCGCGTCCGGCCTGA
CircID chr11:609423|609614
ORF Type ORF4
Protein Length 62
Nucleotide Length 186
Protein Sequence MMHDEDPSQPPPLPEGTQEPHLLRPDAAEKAEAPSSPDVAPAGKEDSPSASGRVQEAARPEE
Nucleotide Sequence TTGATGCACGATGAAGACCCTTCGCAGCCCCCACCCCTGCCAGAGGGCACCCAGGAGCCACATTTGCTCAGGCCGGACGCGGCTGAGAAGGCTGAGGCACCCAGTTCCCCGGATGTGGCGCCTGCGGGGAAGGAAGACAGCCCCTCTGCGAGTGGGAGGGTACAGGAGGCAGCCCGGCCTGAGGAG
CircID chr11:609423|609614
ORF Type ORF5
Protein Length 58
Nucleotide Length 174
Protein Sequence MKTLRSPHPCQRAPRSHICSGRTRLRRLRHPVPRMWRLRGRKTAPLRVGGYRRQPGLR
Nucleotide Sequence ATGAAGACCCTTCGCAGCCCCCACCCCTGCCAGAGGGCACCCAGGAGCCACATTTGCTCAGGCCGGACGCGGCTGAGAAGGCTGAGGCACCCAGTTCCCCGGATGTGGCGCCTGCGGGGAAGGAAGACAGCCCCTCTGCGAGTGGGAGGGTACAGGAGGCAGCCCGGCCTGAGG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab