CircRNA Information

General Information
circRNA Basic Information
CircID chr11:613306|613458
Strand -
CircType exon
Host Gene ENSG00000185507.18;
Algorism CIRI2;
Sequence CTCCCAGTACACCTTGCACTTGCCCATGCGCCGGGCCCACAGCTGTGGCCCCCGAAGCTCCAGGTGCAACCCAGGGGCCACGTGCCGCAGCAGTTCCTCCGTGTAGCGCAGCTGCTTCTGGTCCGGGAGCTCGGCAGGGCTGGGGAATGCTAC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr11:613306|613458 hsa-miR-130a-5p 0 0 1
chr11:613306|613458 hsa-miR-130a-3p 0 0 1
chr11:613306|613458 hsa-miR-301a-5p 0 0 1
chr11:613306|613458 hsa-miR-301a-3p 0 0 1
chr11:613306|613458 hsa-miR-130b-5p 0 0 1
chr11:613306|613458 hsa-miR-130b-3p 0 0 1
chr11:613306|613458 hsa-miR-602 1 1 1
chr11:613306|613458 hsa-miR-619-5p 0 0 1
chr11:613306|613458 hsa-miR-619-3p 0 0 1
chr11:613306|613458 hsa-miR-646 0 1 1
chr11:613306|613458 hsa-miR-454-5p 0 0 1
chr11:613306|613458 hsa-miR-454-3p 0 0 1
chr11:613306|613458 hsa-miR-301b-5p 0 0 1
chr11:613306|613458 hsa-miR-301b-3p 0 0 1
chr11:613306|613458 hsa-miR-1179 0 0 1
chr11:613306|613458 hsa-miR-663b 0 1 1
chr11:613306|613458 hsa-miR-1204 0 1 1
chr11:613306|613458 hsa-miR-296-5p 0 0 1
chr11:613306|613458 hsa-miR-331-3p 0 0 1
chr11:613306|613458 hsa-miR-519b-3p 0 0 1
chr11:613306|613458 hsa-miR-519c-3p 0 0 1
chr11:613306|613458 hsa-miR-519a 0 0 1
chr11:613306|613458 hsa-miR-637 1 0 0
chr11:613306|613458 hsa-miR-762 1 0 0
chr11:613306|613458 hsa-miR-298 1 0 0
chr11:613306|613458 hsa-miR-665 1 0 0
chr11:613306|613458 hsa-miR-1268a 1 0 0
chr11:613306|613458 hsa-miR-1469 1 0 0
chr11:613306|613458 hsa-miR-2861 1 1 0
chr11:613306|613458 hsa-miR-4296 0 1 0
chr11:613306|613458 hsa-miR-4322 1 1 0
chr11:613306|613458 hsa-miR-4254 0 1 0
chr11:613306|613458 hsa-miR-4265 0 1 0
chr11:613306|613458 hsa-miR-3665 1 0 0
chr11:613306|613458 hsa-miR-1268b 1 0 0
chr11:613306|613458 hsa-miR-4462 1 0 0
chr11:613306|613458 hsa-miR-4488 1 0 0
chr11:613306|613458 hsa-miR-4492 1 0 0
chr11:613306|613458 hsa-miR-4498 1 0 0
chr11:613306|613458 hsa-miR-4507 0 1 0
chr11:613306|613458 hsa-miR-1587 1 0 0
chr11:613306|613458 hsa-miR-3960 1 0 0
chr11:613306|613458 hsa-miR-4663 1 1 0
chr11:613306|613458 hsa-miR-4674 1 0 0
chr11:613306|613458 hsa-miR-4734 1 0 0
chr11:613306|613458 hsa-miR-4739 1 0 0
chr11:613306|613458 hsa-miR-5572 1 0 0
chr11:613306|613458 hsa-miR-5698 1 0 0
chr11:613306|613458 hsa-miR-5705 1 1 0
chr11:613306|613458 hsa-miR-134-3p 0 1 0
chr11:613306|613458 hsa-miR-6861-5p 1 0 0
chr11:613306|613458 hsa-miR-6720-5p 0 1 0
chr11:613306|613458 hsa-miR-766-5p 0 1 0
chr11:613306|613458 hsa-miR-1301-3p 1 0 0
chr11:613306|613458 hsa-miR-6727-5p 1 0 0
chr11:613306|613458 hsa-miR-3622b-5p 1 0 0
chr11:613306|613458 hsa-miR-6721-5p 1 0 0
chr11:613306|613458 hsa-miR-6776-5p 1 0 0
chr11:613306|613458 hsa-miR-6849-3p 0 1 0
chr11:613306|613458 hsa-miR-1915-5p 1 1 0
chr11:613306|613458 hsa-miR-6763-3p 1 1 0
chr11:613306|613458 hsa-miR-4640-5p 1 1 0
chr11:613306|613458 hsa-miR-3677-3p 1 0 0
chr11:613306|613458 hsa-miR-6749-5p 1 0 0
chr11:613306|613458 hsa-miR-6742-3p 0 1 0
chr11:613306|613458 hsa-miR-1225-5p 1 0 0
chr11:613306|613458 hsa-miR-4707-5p 1 1 0
chr11:613306|613458 hsa-miR-1226-3p 1 0 0
chr11:613306|613458 hsa-miR-3619-3p 1 0 0
chr11:613306|613458 hsa-miR-4761-5p 0 1 0
chr11:613306|613458 hsa-miR-3173-5p 0 1 0
chr11:613306|613458 hsa-miR-6779-3p 0 1 0
chr11:613306|613458 hsa-miR-500a-3p 0 1 0
chr11:613306|613458 hsa-miR-4763-3p 1 0 0
chr11:613306|613458 hsa-miR-6893-5p 1 0 0
chr11:613306|613458 hsa-miR-6775-5p 1 0 0
chr11:613306|613458 hsa-miR-6879-5p 1 0 0
chr11:613306|613458 hsa-miR-3620-5p 1 0 0
chr11:613306|613458 hsa-miR-1237-5p 1 0 0
chr11:613306|613458 hsa-miR-1909-3p 1 0 0
chr11:613306|613458 hsa-miR-4649-5p 1 0 0
chr11:613306|613458 hsa-miR-4726-5p 1 0 0
chr11:613306|613458 hsa-miR-4745-3p 0 1 0
chr11:613306|613458 hsa-miR-6848-5p 1 0 0
chr11:613306|613458 hsa-miR-6845-5p 0 1 0
chr11:613306|613458 hsa-miR-6799-3p 0 1 0
chr11:613306|613458 hsa-miR-6724-5p 1 1 0
chr11:613306|613458 hsa-miR-6791-5p 1 0 0
chr11:613306|613458 hsa-miR-7157-3p 0 1 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr11:613306|613458
ORF Type ORF1
Protein Length 37
Nucleotide Length 111
Protein Sequence MWPPKLQVQPRGHVPQQFLRVAQLLLVRELGRAGECY
Nucleotide Sequence CTGTGGCCCCCGAAGCTCCAGGTGCAACCCAGGGGCCACGTGCCGCAGCAGTTCCTCCGTGTAGCGCAGCTGCTTCTGGTCCGGGAGCTCGGCAGGGCTGGGGAATGCTAC
CircID chr11:613306|613458
ORF Type ORF2
Protein Length 30
Nucleotide Length 93
Protein Sequence MHLPMRRAHSCGPRSSRCNPGATCRSSSSV
Nucleotide Sequence TTGCACTTGCCCATGCGCCGGGCCCACAGCTGTGGCCCCCGAAGCTCCAGGTGCAACCCAGGGGCCACGTGCCGCAGCAGTTCCTCCGTGTAG
CircID chr11:613306|613458
ORF Type ORF3
Protein Length 37
Nucleotide Length 111
Protein Sequence MRYTEELLRHVAPGLHLELRGPQLWARRMGKCKVYWE
Nucleotide Sequence CTGCGCTACACGGAGGAACTGCTGCGGCACGTGGCCCCTGGGTTGCACCTGGAGCTTCGGGGGCCACAGCTGTGGGCCCGGCGCATGGGCAAGTGCAAGGTGTACTGGGAG
CircID chr11:613306|613458
ORF Type ORF4
Protein Length 45
Nucleotide Length 135
Protein Sequence MPSSRTRSSCATRRNCCGTWPLGCTWSFGGHSCGPGAWASARCTG
Nucleotide Sequence CTGCCGAGCTCCCGGACCAGAAGCAGCTGCGCTACACGGAGGAACTGCTGCGGCACGTGGCCCCTGGGTTGCACCTGGAGCTTCGGGGGCCACAGCTGTGGGCCCGGCGCATGGGCAAGTGCAAGGTGTACTGGG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab