CircRNA Information

General Information
circRNA Basic Information
CircID chr11:61405113|61405392
Strand +
CircType exon
Host Gene
Algorism CIRI2;
Sequence CTATGGCTGTCATGCGAGGAAAGACTTAAAATCTCGAGTTTTAGTACACTTGGAAAACCTCTGGGGCTGTGTTTGTGTACACACATACTCATAAAGGCACTTTTAGCCAGGACTCCTTTAAAAAGAAAAAAGAAGGATTTAAGAGTTTCCTGTGTATGTGCATCCTGCCTGCTAGGGCCTCTTGGGTGTTTGGGGATTAATGGATTTGGTTGTGTACATACTTGTTTTCTTACCACTAAACCTCCCATTTCCAGATTTTTCCCCCTCCCCTTAAGGTAAG
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr11:61405113|61405392 hsa-miR-17-5p 0 0 1
chr11:61405113|61405392 hsa-miR-17-3p 0 0 1
chr11:61405113|61405392 hsa-miR-20a-5p 0 0 1
chr11:61405113|61405392 hsa-miR-20a-3p 0 0 1
chr11:61405113|61405392 hsa-miR-93-5p 0 0 1
chr11:61405113|61405392 hsa-miR-93-3p 0 0 1
chr11:61405113|61405392 hsa-miR-106a-5p 0 0 1
chr11:61405113|61405392 hsa-miR-106a-3p 0 0 1
chr11:61405113|61405392 hsa-miR-106b-5p 0 0 1
chr11:61405113|61405392 hsa-miR-106b-3p 0 0 1
chr11:61405113|61405392 hsa-miR-20b-5p 0 0 1
chr11:61405113|61405392 hsa-miR-20b-3p 0 0 1
chr11:61405113|61405392 hsa-miR-496 0 0 1
chr11:61405113|61405392 hsa-miR-519e-5p 0 0 1
chr11:61405113|61405392 hsa-miR-519e-3p 0 0 1
chr11:61405113|61405392 hsa-miR-519d-5p 0 0 1
chr11:61405113|61405392 hsa-miR-519d-3p 0 0 1
chr11:61405113|61405392 hsa-miR-570-5p 0 0 1
chr11:61405113|61405392 hsa-miR-570-3p 0 0 1
chr11:61405113|61405392 hsa-miR-605-5p 0 0 1
chr11:61405113|61405392 hsa-miR-605-3p 0 0 1
chr11:61405113|61405392 hsa-miR-625-5p 0 0 1
chr11:61405113|61405392 hsa-miR-625-3p 0 0 1
chr11:61405113|61405392 hsa-miR-1264 0 0 1
chr11:61405113|61405392 hsa-miR-940 0 0 1
chr11:61405113|61405392 hsa-miR-1237-5p 0 0 1
chr11:61405113|61405392 hsa-miR-1237-3p 0 0 1
chr11:61405113|61405392 hsa-miR-1238-5p 0 0 1
chr11:61405113|61405392 hsa-miR-1238-3p 0 0 1
chr11:61405113|61405392 hsa-miR-548e-5p 0 0 1
chr11:61405113|61405392 hsa-miR-548e-3p 0 0 1
chr11:61405113|61405392 hsa-miR-1299 0 0 1
chr11:61405113|61405392 hsa-miR-1248 0 0 1
chr11:61405113|61405392 hsa-miR-548n 0 0 1
chr11:61405113|61405392 hsa-miR-140-5p 0 0 1
chr11:61405113|61405392 hsa-miR-1289 0 1 1
chr11:61405113|61405392 hsa-miR-875-3p 0 0 1
chr11:61405113|61405392 hsa-miR-885-5p 0 0 1
chr11:61405113|61405392 hsa-miR-515-3p 0 0 1
chr11:61405113|61405392 hsa-miR-548a-3p 0 0 1
chr11:61405113|61405392 hsa-miR-548c-3p 0 0 1
chr11:61405113|61405392 hsa-miR-548f 0 0 1
chr11:61405113|61405392 hsa-miR-500 0 0 1
chr11:61405113|61405392 hsa-miR-665 1 0 0
chr11:61405113|61405392 hsa-miR-3689c 0 1 0
chr11:61405113|61405392 hsa-miR-4514 0 1 0
chr11:61405113|61405392 hsa-miR-4523 1 0 0
chr11:61405113|61405392 hsa-miR-4672 1 0 0
chr11:61405113|61405392 hsa-miR-4692 0 1 0
chr11:61405113|61405392 hsa-miR-5093 0 1 0
chr11:61405113|61405392 hsa-miR-8073 0 1 0
chr11:61405113|61405392 hsa-miR-12127 0 1 0
chr11:61405113|61405392 hsa-miR-671-5p 1 0 0
chr11:61405113|61405392 hsa-miR-6825-5p 0 1 0
chr11:61405113|61405392 hsa-miR-6089 1 0 0
chr11:61405113|61405392 hsa-miR-6871-5p 0 1 0
chr11:61405113|61405392 hsa-miR-6768-5p 0 1 0
chr11:61405113|61405392 hsa-miR-6782-5p 1 0 0
chr11:61405113|61405392 hsa-miR-3156-5p 1 1 0
chr11:61405113|61405392 hsa-miR-5008-5p 1 1 0
chr11:61405113|61405392 hsa-miR-4690-5p 0 1 0
chr11:61405113|61405392 hsa-miR-6830-3p 0 1 0
chr11:61405113|61405392 hsa-miR-574-5p 1 1 0
chr11:61405113|61405392 hsa-miR-7160-3p 1 0 0
chr11:61405113|61405392 hsa-miR-6856-3p 0 1 0
chr11:61405113|61405392 hsa-miR-3177-5p 0 1 0
chr11:61405113|61405392 hsa-miR-329-5p 0 1 0
chr11:61405113|61405392 hsa-miR-3689b-3p 0 1 0
chr11:61405113|61405392 hsa-miR-6756-5p 1 0 0
chr11:61405113|61405392 hsa-miR-6779-5p 1 0 0
chr11:61405113|61405392 hsa-miR-6780a-5p 0 1 0
chr11:61405113|61405392 hsa-miR-4728-5p 0 1 0
chr11:61405113|61405392 hsa-miR-3689a-3p 0 1 0
chr11:61405113|61405392 hsa-miR-6883-5p 1 1 0
chr11:61405113|61405392 hsa-miR-4716-3p 0 1 0
chr11:61405113|61405392 hsa-miR-6785-5p 0 1 0
chr11:61405113|61405392 hsa-miR-550a-5p 1 0 0
chr11:61405113|61405392 hsa-miR-6718-5p 1 0 0
chr11:61405113|61405392 hsa-miR-3619-5p 0 1 0
chr11:61405113|61405392 hsa-miR-664a-3p 0 1 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr11:61405113|61405392
ORF Type ORF1
Protein Length 90
Nucleotide Length 273
Protein Sequence MSCEERLKISSFSTLGKPLGLCLCTHILIKALLARTPLKRKKKDLRVSCVCASCLLGPLGCLGINGFGCVHTCFLTTKPPISRFFPLPLR
Nucleotide Sequence CTGTCATGCGAGGAAAGACTTAAAATCTCGAGTTTTAGTACACTTGGAAAACCTCTGGGGCTGTGTTTGTGTACACACATACTCATAAAGGCACTTTTAGCCAGGACTCCTTTAAAAAGAAAAAAGAAGGATTTAAGAGTTTCCTGTGTATGTGCATCCTGCCTGCTAGGGCCTCTTGGGTGTTTGGGGATTAATGGATTTGGTTGTGTACATACTTGTTTTCTTACCACTAAACCTCCCATTTCCAGATTTTTCCCCCTCCCCTTAAGGTAA
CircID chr11:61405113|61405392
ORF Type ORF2
Protein Length 30
Nucleotide Length 93
Protein Sequence MGVWGLMDLVVYILVFLPLNLPFPDFSPSP
Nucleotide Sequence TTGGGTGTTTGGGGATTAATGGATTTGGTTGTGTACATACTTGTTTTCTTACCACTAAACCTCCCATTTCCAGATTTTTCCCCCTCCCCTTAA
CircID chr11:61405113|61405392
ORF Type ORF3
Protein Length 84
Nucleotide Length 252
Protein Sequence MEMGGLVVRKQVCTQPNPLIPKHPRGPSRQDAHTQETLKSFFFLFKGVLAKSAFMSMCVHKHSPRGFPSVLKLEILSLSSHDSH
Nucleotide Sequence CTGGAAATGGGAGGTTTAGTGGTAAGAAAACAAGTATGTACACAACCAAATCCATTAATCCCCAAACACCCAAGAGGCCCTAGCAGGCAGGATGCACATACACAGGAAACTCTTAAATCCTTCTTTTTTCTTTTTAAAGGAGTCCTGGCTAAAAGTGCCTTTATGAGTATGTGTGTACACAAACACAGCCCCAGAGGTTTTCCAAGTGTACTAAAACTCGAGATTTTAAGTCTTTCCTCGCATGACAGCCAT
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab