CircRNA Information

General Information
circRNA Basic Information
CircID chr11:61514157|61514342
Strand +
CircType exon
Host Gene
Algorism CIRI2;
Sequence CTGGTTTAGATATCACTTCTGATCTCTGTTCCAGAGATCAGAGGAAGCCCCGGGGTCAGGTAAGTAGCCTCAGGGGCTCCCTTGGCCAGAGCTTCTGTTCAGGCGCTCTCCATGAAAGCAGCCCTGGAAAACTGAGCCTGAAGTCAGAGACAGCTCAGGCCCAGCACAGGGGGCAGTCCCTTGCCA
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr11:61514157|61514342 hsa-miR-31-5p 0 0 1
chr11:61514157|61514342 hsa-miR-31-3p 0 0 1
chr11:61514157|61514342 hsa-miR-185-5p 0 0 1
chr11:61514157|61514342 hsa-miR-185-3p 0 0 1
chr11:61514157|61514342 hsa-miR-383-5p 0 0 1
chr11:61514157|61514342 hsa-miR-383-3p 0 0 1
chr11:61514157|61514342 hsa-miR-326 0 0 1
chr11:61514157|61514342 hsa-miR-345-5p 0 0 1
chr11:61514157|61514342 hsa-miR-345-3p 0 0 1
chr11:61514157|61514342 hsa-miR-484 0 1 1
chr11:61514157|61514342 hsa-miR-558 0 0 1
chr11:61514157|61514342 hsa-miR-593-5p 0 0 1
chr11:61514157|61514342 hsa-miR-593-3p 0 0 1
chr11:61514157|61514342 hsa-miR-617 0 0 1
chr11:61514157|61514342 hsa-miR-626 0 0 1
chr11:61514157|61514342 hsa-miR-1299 0 0 1
chr11:61514157|61514342 hsa-miR-1288-5p 0 0 1
chr11:61514157|61514342 hsa-miR-1288-3p 0 0 1
chr11:61514157|61514342 hsa-miR-1225-3p 1 1 1
chr11:61514157|61514342 hsa-miR-485-5p 0 0 1
chr11:61514157|61514342 hsa-miR-339-3p 0 1 1
chr11:61514157|61514342 hsa-miR-490-5p 0 0 1
chr11:61514157|61514342 hsa-miR-875-3p 0 0 1
chr11:61514157|61514342 hsa-miR-324-3p 0 0 1
chr11:61514157|61514342 hsa-miR-125a-5p 0 1 1
chr11:61514157|61514342 hsa-miR-330-5p 0 0 1
chr11:61514157|61514342 hsa-miR-516a-3p 0 0 1
chr11:61514157|61514342 hsa-miR-125b 0 0 1
chr11:61514157|61514342 hsa-miR-24 0 0 1
chr11:61514157|61514342 hsa-miR-1913 0 1 0
chr11:61514157|61514342 hsa-miR-544b 0 1 0
chr11:61514157|61514342 hsa-miR-3918 1 0 0
chr11:61514157|61514342 hsa-miR-3975 0 1 0
chr11:61514157|61514342 hsa-miR-4656 1 0 0
chr11:61514157|61514342 hsa-miR-6069 1 0 0
chr11:61514157|61514342 hsa-miR-6078 0 1 0
chr11:61514157|61514342 hsa-miR-6085 1 0 0
chr11:61514157|61514342 hsa-miR-7706 1 0 0
chr11:61514157|61514342 hsa-miR-8052 1 0 0
chr11:61514157|61514342 hsa-miR-9898 0 1 0
chr11:61514157|61514342 hsa-miR-12128 1 1 0
chr11:61514157|61514342 hsa-miR-24-3p 0 1 0
chr11:61514157|61514342 hsa-miR-6762-3p 0 1 0
chr11:61514157|61514342 hsa-miR-6829-5p 0 1 0
chr11:61514157|61514342 hsa-miR-6827-5p 0 1 0
chr11:61514157|61514342 hsa-miR-5006-5p 1 0 0
chr11:61514157|61514342 hsa-miR-6784-5p 1 1 0
chr11:61514157|61514342 hsa-miR-6753-5p 1 0 0
chr11:61514157|61514342 hsa-miR-3190-5p 0 1 0
chr11:61514157|61514342 hsa-miR-6720-3p 0 1 0
chr11:61514157|61514342 hsa-miR-1914-5p 0 1 0
chr11:61514157|61514342 hsa-miR-4649-3p 0 1 0
chr11:61514157|61514342 hsa-miR-5002-3p 0 1 0
chr11:61514157|61514342 hsa-miR-4763-3p 1 1 0
chr11:61514157|61514342 hsa-miR-1343-5p 1 0 0
chr11:61514157|61514342 hsa-miR-6813-5p 1 0 0
chr11:61514157|61514342 hsa-miR-3620-5p 1 0 0
chr11:61514157|61514342 hsa-miR-4685-5p 1 1 0
chr11:61514157|61514342 hsa-miR-939-5p 1 0 0
chr11:61514157|61514342 hsa-miR-3199 0 1 0
chr11:61514157|61514342 hsa-miR-1266-5p 1 0 0
chr11:61514157|61514342 hsa-miR-550a-5p 1 0 0
chr11:61514157|61514342 hsa-miR-6529-5p 0 1 0
chr11:61514157|61514342 hsa-miR-3928-5p 0 1 0
chr11:61514157|61514342 hsa-miR-6876-3p 0 1 0
chr11:61514157|61514342 hsa-miR-6806-3p 0 1 0
chr11:61514157|61514342 hsa-miR-125b-5p 0 1 0
chr11:61514157|61514342 hsa-miR-301a-5p 0 1 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

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    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr11:61514157|61514342
ORF Type ORF1
Protein Length 27
Nucleotide Length 84
Protein Sequence MSLTSGSVFQGCFHGERLNRSSGQGSP
Nucleotide Sequence CTGTCTCTGACTTCAGGCTCAGTTTTCCAGGGCTGCTTTCATGGAGAGCGCCTGAACAGAAGCTCTGGCCAAGGGAGCCCCTGA
CircID chr11:61514157|61514342
ORF Type ORF2
Protein Length 27
Nucleotide Length 84
Protein Sequence MAKGAPEATYLTPGLPLISGTEIRSDI
Nucleotide Sequence CTGGCCAAGGGAGCCCCTGAGGCTACTTACCTGACCCCGGGGCTTCCTCTGATCTCTGGAACAGAGATCAGAAGTGATATCTAA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab