CircRNA Information

General Information
circRNA Basic Information
CircID chr11:62517841|62518044
Strand -
CircType exon
Host Gene ENSG00000124942.12;
Algorism CIRI2;
Sequence CACCTTTGATTTCAGGCCCAGAAATCTGCCCAGTTGGGAGTTTCACATTCACGCCTGGCAGGTTCACATCACATCCAGAGGACTTAATTCCAGGCATCTGGAGGTTTCCTTCTAGGCCTTGAACACCAATGCCTGGAAGACCTCCTCCGACAGTGGGGCCTTTGATCTCACCAGTGGCCCCAAGGCTCCCTTTCACTTTTGGTC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr11:62517841|62518044 hsa-miR-150-5p 0 0 1
chr11:62517841|62518044 hsa-miR-150-3p 0 0 1
chr11:62517841|62518044 hsa-miR-488-5p 0 0 1
chr11:62517841|62518044 hsa-miR-488-3p 0 0 1
chr11:62517841|62518044 hsa-miR-612 1 1 1
chr11:62517841|62518044 hsa-miR-661 1 0 1
chr11:62517841|62518044 hsa-miR-765 0 0 1
chr11:62517841|62518044 hsa-miR-1256 0 0 1
chr11:62517841|62518044 hsa-miR-1257 0 0 1
chr11:62517841|62518044 hsa-miR-1252-5p 0 0 1
chr11:62517841|62518044 hsa-miR-1252-3p 0 0 1
chr11:62517841|62518044 hsa-miR-1285 0 0 1
chr11:62517841|62518044 hsa-miR-1254 0 0 1
chr11:62517841|62518044 hsa-miR-4299 0 1 0
chr11:62517841|62518044 hsa-miR-3909 1 1 0
chr11:62517841|62518044 hsa-miR-378g 0 1 0
chr11:62517841|62518044 hsa-miR-4539 1 0 0
chr11:62517841|62518044 hsa-miR-4736 1 1 0
chr11:62517841|62518044 hsa-miR-5706 0 1 0
chr11:62517841|62518044 hsa-miR-6128 0 1 0
chr11:62517841|62518044 hsa-miR-6860 1 1 0
chr11:62517841|62518044 hsa-miR-6861-5p 1 0 0
chr11:62517841|62518044 hsa-miR-3934-5p 1 0 0
chr11:62517841|62518044 hsa-miR-769-5p 1 0 0
chr11:62517841|62518044 hsa-miR-4755-3p 0 1 0
chr11:62517841|62518044 hsa-miR-6827-5p 0 1 0
chr11:62517841|62518044 hsa-miR-7855-5p 0 1 0
chr11:62517841|62518044 hsa-miR-5006-5p 0 1 0
chr11:62517841|62518044 hsa-miR-3189-3p 0 1 0
chr11:62517841|62518044 hsa-miR-3922-5p 0 1 0
chr11:62517841|62518044 hsa-miR-6768-3p 0 1 0
chr11:62517841|62518044 hsa-miR-3675-5p 0 1 0
chr11:62517841|62518044 hsa-miR-329-5p 0 1 0
chr11:62517841|62518044 hsa-miR-6735-5p 1 0 0
chr11:62517841|62518044 hsa-miR-3187-5p 1 1 0
chr11:62517841|62518044 hsa-miR-6845-5p 0 1 0
chr11:62517841|62518044 hsa-miR-4758-5p 1 0 0
chr11:62517841|62518044 hsa-miR-1271-3p 1 0 0
chr11:62517841|62518044 hsa-miR-3116 0 1 0
chr11:62517841|62518044 hsa-miR-330-5p 1 0 0
chr11:62517841|62518044 hsa-miR-548az-5p 0 1 0
chr11:62517841|62518044 hsa-miR-4782-5p 0 1 0
chr11:62517841|62518044 hsa-miR-548t-5p 0 1 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr11:62517841|62518044
ORF Type ORF1
Protein Length 29
Nucleotide Length 90
Protein Sequence MPSWEFHIHAWQVHITSRGLNSRHLEVSF
Nucleotide Sequence CTGCCCAGTTGGGAGTTTCACATTCACGCCTGGCAGGTTCACATCACATCCAGAGGACTTAATTCCAGGCATCTGGAGGTTTCCTTCTAG
CircID chr11:62517841|62518044
ORF Type ORF2
Protein Length 28
Nucleotide Length 84
Protein Sequence MNTNAWKTSSDSGAFDLTSGPKAPFHFW
Nucleotide Sequence TTGAACACCAATGCCTGGAAGACCTCCTCCGACAGTGGGGCCTTTGATCTCACCAGTGGCCCCAAGGCTCCCTTTCACTTTTGG
CircID chr11:62517841|62518044
ORF Type ORF3
Protein Length 38
Nucleotide Length 117
Protein Sequence MISGPEICPVGSFTFTPGRFTSHPEDLIPGIWRFPSRP
Nucleotide Sequence TTGATTTCAGGCCCAGAAATCTGCCCAGTTGGGAGTTTCACATTCACGCCTGGCAGGTTCACATCACATCCAGAGGACTTAATTCCAGGCATCTGGAGGTTTCCTTCTAGGCCTTGA
CircID chr11:62517841|62518044
ORF Type ORF4
Protein Length 25
Nucleotide Length 75
Protein Sequence MPGRPPPTVGPLISPVAPRLPFTFG
Nucleotide Sequence ATGCCTGGAAGACCTCCTCCGACAGTGGGGCCTTTGATCTCACCAGTGGCCCCAAGGCTCCCTTTCACTTTTGGT
CircID chr11:62517841|62518044
ORF Type ORF5
Protein Length 32
Nucleotide Length 96
Protein Sequence MPGIKSSGCDVNLPGVNVKLPTGQISGPEIKG
Nucleotide Sequence ATGCCTGGAATTAAGTCCTCTGGATGTGATGTGAACCTGCCAGGCGTGAATGTGAAACTCCCAACTGGGCAGATTTCTGGGCCTGAAATCAAAGGT
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab