CircRNA Information

General Information
circRNA Basic Information
CircID chr11:62518669|62518887
Strand -
CircType exon
Host Gene ENSG00000124942.12;
Algorism CIRI2;
Sequence CCTCCATTTTCACACCTGGGATGCCGATCTTGGGCATGGAAAACTTGGGGAACTTAATTTTTGCTTCTGGACCTTGCAGATCTACATCTGGTCCTTCCAGTCCCACGCTGGGGACATCACCCTTTATCTTTGGTCCTTTCAAGTTTACATTCACATCAGGGATGGAGACTTGAGGGGCAGAAATGCCGAAGGACGGTGTTTTGACTTTAGCATCTAGGC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr11:62518669|62518887 hsa-miR-30a-5p 0 0 1
chr11:62518669|62518887 hsa-miR-30a-3p 0 0 1
chr11:62518669|62518887 hsa-miR-198 0 1 1
chr11:62518669|62518887 hsa-miR-30d-5p 0 0 1
chr11:62518669|62518887 hsa-miR-30d-3p 0 0 1
chr11:62518669|62518887 hsa-miR-30b-5p 0 0 1
chr11:62518669|62518887 hsa-miR-30b-3p 0 0 1
chr11:62518669|62518887 hsa-miR-136-5p 0 0 1
chr11:62518669|62518887 hsa-miR-136-3p 0 0 1
chr11:62518669|62518887 hsa-miR-30e-5p 0 0 1
chr11:62518669|62518887 hsa-miR-30e-3p 0 0 1
chr11:62518669|62518887 hsa-miR-488-5p 0 0 1
chr11:62518669|62518887 hsa-miR-488-3p 0 0 1
chr11:62518669|62518887 hsa-miR-577 0 0 1
chr11:62518669|62518887 hsa-miR-587 0 0 1
chr11:62518669|62518887 hsa-miR-1323 0 0 1
chr11:62518669|62518887 hsa-miR-1257 0 0 1
chr11:62518669|62518887 hsa-miR-548o-3p 0 0 1
chr11:62518669|62518887 hsa-miR-548p 0 0 1
chr11:62518669|62518887 hsa-miR-548o 0 0 1
chr11:62518669|62518887 hsa-miR-324-5p 0 0 1
chr11:62518669|62518887 hsa-miR-324-3p 0 0 1
chr11:62518669|62518887 hsa-miR-125a-5p 0 0 1
chr11:62518669|62518887 hsa-miR-125b 0 0 1
chr11:62518669|62518887 hsa-miR-30c 0 0 1
chr11:62518669|62518887 hsa-miR-544 0 0 1
chr11:62518669|62518887 hsa-miR-298 0 1 0
chr11:62518669|62518887 hsa-miR-4498 0 1 0
chr11:62518669|62518887 hsa-miR-4648 0 1 0
chr11:62518669|62518887 hsa-miR-4752 0 1 0
chr11:62518669|62518887 hsa-miR-4759 0 1 0
chr11:62518669|62518887 hsa-miR-8052 0 1 0
chr11:62518669|62518887 hsa-miR-18a-3p 0 1 0
chr11:62518669|62518887 hsa-miR-6728-5p 1 1 0
chr11:62518669|62518887 hsa-miR-3934-5p 0 1 0
chr11:62518669|62518887 hsa-miR-7154-3p 0 1 0
chr11:62518669|62518887 hsa-miR-4728-3p 1 0 0
chr11:62518669|62518887 hsa-miR-3151-5p 1 0 0
chr11:62518669|62518887 hsa-miR-3126-5p 1 0 0
chr11:62518669|62518887 hsa-miR-2276-3p 1 1 0
chr11:62518669|62518887 hsa-miR-6854-3p 0 1 0
chr11:62518669|62518887 hsa-miR-6738-3p 0 1 0
chr11:62518669|62518887 hsa-miR-4749-3p 0 1 0
chr11:62518669|62518887 hsa-miR-3184-3p 0 1 0
chr11:62518669|62518887 hsa-miR-670-5p 0 1 0
chr11:62518669|62518887 hsa-miR-6812-5p 1 0 0
chr11:62518669|62518887 hsa-miR-6756-5p 1 0 0
chr11:62518669|62518887 hsa-miR-6846-5p 1 0 0
chr11:62518669|62518887 hsa-miR-6848-5p 1 0 0
chr11:62518669|62518887 hsa-miR-365a-5p 1 0 0
chr11:62518669|62518887 hsa-miR-6790-5p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr11:62518669|62518887
ORF Type ORF1
Protein Length 47
Nucleotide Length 144
Protein Sequence MLLDLADLHLVLPVPRWGHHPLSLVLSSLHSHQGWRLEGQKCRRTVF
Nucleotide Sequence TTGCTTCTGGACCTTGCAGATCTACATCTGGTCCTTCCAGTCCCACGCTGGGGACATCACCCTTTATCTTTGGTCCTTTCAAGTTTACATTCACATCAGGGATGGAGACTTGAGGGGCAGAAATGCCGAAGGACGGTGTTTTGA
CircID chr11:62518669|62518887
ORF Type ORF2
Protein Length 47
Nucleotide Length 144
Protein Sequence MQIYIWSFQSHAGDITLYLWSFQVYIHIRDGDLRGRNAEGRCFDFSI
Nucleotide Sequence TTGCAGATCTACATCTGGTCCTTCCAGTCCCACGCTGGGGACATCACCCTTTATCTTTGGTCCTTTCAAGTTTACATTCACATCAGGGATGGAGACTTGAGGGGCAGAAATGCCGAAGGACGGTGTTTTGACTTTAGCATCTAG
CircID chr11:62518669|62518887
ORF Type ORF3
Protein Length 50
Nucleotide Length 153
Protein Sequence MPILGMENLGNLIFASGPCRSTSGPSSPTLGTSPFIFGPFKFTFTSGMET
Nucleotide Sequence ATGCCGATCTTGGGCATGGAAAACTTGGGGAACTTAATTTTTGCTTCTGGACCTTGCAGATCTACATCTGGTCCTTCCAGTCCCACGCTGGGGACATCACCCTTTATCTTTGGTCCTTTCAAGTTTACATTCACATCAGGGATGGAGACTTGA
CircID chr11:62518669|62518887
ORF Type ORF4
Protein Length 47
Nucleotide Length 141
Protein Sequence MKGPKIKGDVPSVGLEGPDVDLQGPEAKIKFPKFSMPKIGIPGVKME
Nucleotide Sequence TTGAAAGGACCAAAGATAAAGGGTGATGTCCCCAGCGTGGGACTGGAAGGACCAGATGTAGATCTGCAAGGTCCAGAAGCAAAAATTAAGTTCCCCAAGTTTTCCATGCCCAAGATCGGCATCCCAGGTGTGAAAATGGAG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab