CircRNA Information

General Information
circRNA Basic Information
CircID chr11:62528168|62528377
Strand -
CircType exon
Host Gene ENSG00000124942.12;
Algorism CIRI2;
Sequence CTTGGGTCCTGAGACAACAACATCAGCCTTGGGCAAGTTCACATCCACTTCTGGGCCCTCTGCTTTGAAGCCAGGCATGCTGAACTTGGGCATTTTCATCTTGGGCATCTTCAGGTGCCAGTCTGGGCCATGAACATCCACATCTGGGGCATCAATGTCCATTTTGGGTCCTTTGATGTCAACATCTGGCACTTTCATTTCACCTTCTAC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr11:62528168|62528377 hsa-miR-17-5p 0 0 1
chr11:62528168|62528377 hsa-miR-17-3p 0 0 1
chr11:62528168|62528377 hsa-miR-20a-5p 0 0 1
chr11:62528168|62528377 hsa-miR-20a-3p 0 0 1
chr11:62528168|62528377 hsa-miR-93-5p 0 0 1
chr11:62528168|62528377 hsa-miR-93-3p 0 0 1
chr11:62528168|62528377 hsa-miR-106a-5p 0 0 1
chr11:62528168|62528377 hsa-miR-106a-3p 0 0 1
chr11:62528168|62528377 hsa-miR-106b-5p 0 0 1
chr11:62528168|62528377 hsa-miR-106b-3p 0 0 1
chr11:62528168|62528377 hsa-miR-20b-5p 0 0 1
chr11:62528168|62528377 hsa-miR-20b-3p 0 0 1
chr11:62528168|62528377 hsa-miR-489-5p 0 0 1
chr11:62528168|62528377 hsa-miR-489-3p 0 0 1
chr11:62528168|62528377 hsa-miR-519d-5p 0 0 1
chr11:62528168|62528377 hsa-miR-519d-3p 0 0 1
chr11:62528168|62528377 hsa-miR-661 0 0 1
chr11:62528168|62528377 hsa-miR-1206 0 0 1
chr11:62528168|62528377 hsa-miR-1266-5p 0 0 1
chr11:62528168|62528377 hsa-miR-1266-3p 0 0 1
chr11:62528168|62528377 hsa-miR-330-3p 0 1 1
chr11:62528168|62528377 hsa-miR-576-3p 0 1 1
chr11:62528168|62528377 hsa-miR-1254 0 0 1
chr11:62528168|62528377 hsa-miR-203 0 0 1
chr11:62528168|62528377 hsa-miR-365 0 0 1
chr11:62528168|62528377 hsa-miR-663b 1 1 0
chr11:62528168|62528377 hsa-miR-711 0 1 0
chr11:62528168|62528377 hsa-miR-3929 0 1 0
chr11:62528168|62528377 hsa-miR-4494 0 1 0
chr11:62528168|62528377 hsa-miR-4657 0 1 0
chr11:62528168|62528377 hsa-miR-4698 0 1 0
chr11:62528168|62528377 hsa-miR-138-5p 1 1 0
chr11:62528168|62528377 hsa-miR-3934-5p 0 1 0
chr11:62528168|62528377 hsa-miR-2467-3p 0 1 0
chr11:62528168|62528377 hsa-miR-5088-5p 1 1 0
chr11:62528168|62528377 hsa-miR-3691-5p 0 1 0
chr11:62528168|62528377 hsa-miR-3681-5p 0 1 0
chr11:62528168|62528377 hsa-miR-6814-5p 0 1 0
chr11:62528168|62528377 hsa-miR-4761-5p 0 1 0
chr11:62528168|62528377 hsa-miR-4685-5p 1 0 0
chr11:62528168|62528377 hsa-miR-6735-5p 0 1 0
chr11:62528168|62528377 hsa-miR-6773-5p 1 0 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr11:62528168|62528377
ORF Type ORF1
Protein Length 27
Nucleotide Length 81
Protein Sequence MNIHIWGINVHFGSFDVNIWHFHFTFY
Nucleotide Sequence ATGAACATCCACATCTGGGGCATCAATGTCCATTTTGGGTCCTTTGATGTCAACATCTGGCACTTTCATTTCACCTTCTAC
CircID chr11:62528168|62528377
ORF Type ORF2
Protein Length 43
Nucleotide Length 132
Protein Sequence LGPETTTSALGKFTSTSGPSALKPGMLNLGIFILGIFRCQSGP
Nucleotide Sequence TTGGGTCCTGAGACAACAACATCAGCCTTGGGCAAGTTCACATCCACTTCTGGGCCCTCTGCTTTGAAGCCAGGCATGCTGAACTTGGGCATTTTCATCTTGGGCATCTTCAGGTGCCAGTCTGGGCCATGA
CircID chr11:62528168|62528377
ORF Type ORF3
Protein Length 66
Nucleotide Length 198
Protein Sequence MKVPDVDIKGPKMDIDAPDVDVHGPDWHLKMPKMKMPKFSMPGFKAEGPEVDVNLPKADVVVSGPK
Nucleotide Sequence ATGAAAGTGCCAGATGTTGACATCAAAGGACCCAAAATGGACATTGATGCCCCAGATGTGGATGTTCATGGCCCAGACTGGCACCTGAAGATGCCCAAGATGAAAATGCCCAAGTTCAGCATGCCTGGCTTCAAAGCAGAGGGCCCAGAAGTGGATGTGAACTTGCCCAAGGCTGATGTTGTTGTCTCAGGACCCAAG
CircID chr11:62528168|62528377
ORF Type ORF4
Protein Length 32
Nucleotide Length 99
Protein Sequence MAPEDAQDENAQVQHAWLQSRGPRSGCELAQG
Nucleotide Sequence CTGGCACCTGAAGATGCCCAAGATGAAAATGCCCAAGTTCAGCATGCCTGGCTTCAAAGCAGAGGGCCCAGAAGTGGATGTGAACTTGCCCAAGGCTGA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab