CircRNA Information

General Information
circRNA Basic Information
CircID chr11:62595021|62595333
Strand +
CircType exon
Host Gene ENSG00000149480.5;
Algorism CIRI2;
Sequence CTATTACAGCCAAGGAGGGCCGCCCGACGGCCTTATGCTCCTATCAATGCCAATGCCATCAAAGCAGAGTGTAAGGGCAGGGAGTGGTGGGACTGGTGGTGGGTTTCGGATTGCTCTGCCCAGAGACCGTTGTTTCTCTGGATGTCTAATAACAGGAGGGATAGTAGGCCACAGATAATTTTTTTAAGATTAGAGTTGGCTTCTGGCCTTAGAGGAGACCTGAATGGTGAAGCCCTTCAGAAGCTTTCTTCTTTGTTCTCCAGGCTCCATTCGACTTCCTAAGGCCGCCAAGACTCCATTGAAGATTCACCCT
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr11:62595021|62595333 hsa-miR-197-5p 0 0 1
chr11:62595021|62595333 hsa-miR-197-3p 0 0 1
chr11:62595021|62595333 hsa-miR-326 1 0 1
chr11:62595021|62595333 hsa-miR-412-5p 0 0 1
chr11:62595021|62595333 hsa-miR-412-3p 0 0 1
chr11:62595021|62595333 hsa-miR-593-5p 0 0 1
chr11:62595021|62595333 hsa-miR-593-3p 0 0 1
chr11:62595021|62595333 hsa-miR-612 1 1 1
chr11:62595021|62595333 hsa-miR-618 0 0 1
chr11:62595021|62595333 hsa-miR-647 0 0 1
chr11:62595021|62595333 hsa-miR-708-5p 0 0 1
chr11:62595021|62595333 hsa-miR-708-3p 0 0 1
chr11:62595021|62595333 hsa-miR-924 0 1 1
chr11:62595021|62595333 hsa-miR-938 0 0 1
chr11:62595021|62595333 hsa-miR-663b 0 0 1
chr11:62595021|62595333 hsa-miR-1256 0 0 1
chr11:62595021|62595333 hsa-miR-1289 0 0 1
chr11:62595021|62595333 hsa-miR-525-5p 0 1 1
chr11:62595021|62595333 hsa-miR-1224-3p 0 0 1
chr11:62595021|62595333 hsa-miR-28-5p 0 0 1
chr11:62595021|62595333 hsa-miR-188-5p 0 0 1
chr11:62595021|62595333 hsa-miR-520a-5p 0 1 1
chr11:62595021|62595333 hsa-miR-330-5p 0 0 1
chr11:62595021|62595333 hsa-miR-220b 0 0 1
chr11:62595021|62595333 hsa-miR-1260 0 0 1
chr11:62595021|62595333 hsa-miR-1280 0 0 1
chr11:62595021|62595333 hsa-miR-1285 0 0 1
chr11:62595021|62595333 hsa-miR-1254 0 0 1
chr11:62595021|62595333 hsa-miR-765 1 0 0
chr11:62595021|62595333 hsa-miR-940 1 0 0
chr11:62595021|62595333 hsa-miR-1260a 0 1 0
chr11:62595021|62595333 hsa-miR-1260b 0 1 0
chr11:62595021|62595333 hsa-miR-4309 0 1 0
chr11:62595021|62595333 hsa-miR-3909 0 1 0
chr11:62595021|62595333 hsa-miR-3919 0 1 0
chr11:62595021|62595333 hsa-miR-4531 1 0 0
chr11:62595021|62595333 hsa-miR-4538 1 0 0
chr11:62595021|62595333 hsa-miR-4730 1 0 0
chr11:62595021|62595333 hsa-miR-6860 0 1 0
chr11:62595021|62595333 hsa-miR-8089 1 0 0
chr11:62595021|62595333 hsa-miR-12115 1 1 0
chr11:62595021|62595333 hsa-miR-18a-3p 0 1 0
chr11:62595021|62595333 hsa-miR-504-3p 1 0 0
chr11:62595021|62595333 hsa-miR-7847-3p 1 0 0
chr11:62595021|62595333 hsa-miR-4753-5p 0 1 0
chr11:62595021|62595333 hsa-miR-3180-3p 1 0 0
chr11:62595021|62595333 hsa-miR-4786-3p 1 1 0
chr11:62595021|62595333 hsa-miR-7113-3p 1 1 0
chr11:62595021|62595333 hsa-miR-4732-5p 1 0 0
chr11:62595021|62595333 hsa-miR-6749-5p 1 0 0
chr11:62595021|62595333 hsa-miR-4667-3p 0 1 0
chr11:62595021|62595333 hsa-miR-6830-5p 0 1 0
chr11:62595021|62595333 hsa-miR-3162-5p 0 1 0
chr11:62595021|62595333 hsa-miR-6864-5p 0 1 0
chr11:62595021|62595333 hsa-miR-7846-3p 1 0 0
chr11:62595021|62595333 hsa-miR-3158-3p 0 1 0
chr11:62595021|62595333 hsa-miR-4750-5p 0 1 0
chr11:62595021|62595333 hsa-miR-6752-3p 0 1 0
chr11:62595021|62595333 hsa-miR-4649-3p 1 0 0
chr11:62595021|62595333 hsa-miR-4433a-5p 0 1 0
chr11:62595021|62595333 hsa-miR-1229-3p 1 1 0
chr11:62595021|62595333 hsa-miR-3180 1 0 0
chr11:62595021|62595333 hsa-miR-6743-5p 1 0 0
chr11:62595021|62595333 hsa-miR-7107-5p 1 0 0
chr11:62595021|62595333 hsa-miR-5189-5p 0 1 0
chr11:62595021|62595333 hsa-miR-3187-5p 0 1 0
chr11:62595021|62595333 hsa-miR-3198 1 1 0
chr11:62595021|62595333 hsa-miR-1285-3p 0 1 0
chr11:62595021|62595333 hsa-miR-7843-5p 1 0 0
chr11:62595021|62595333 hsa-miR-3116 0 1 0
chr11:62595021|62595333 hsa-miR-4667-5p 1 1 0
chr11:62595021|62595333 hsa-miR-518e-5p 0 1 0
chr11:62595021|62595333 hsa-miR-519a-5p 0 1 0
chr11:62595021|62595333 hsa-miR-519b-5p 0 1 0
chr11:62595021|62595333 hsa-miR-519c-5p 0 1 0
chr11:62595021|62595333 hsa-miR-522-5p 0 1 0
chr11:62595021|62595333 hsa-miR-523-5p 0 1 0
chr11:62595021|62595333 hsa-miR-6511b-3p 1 1 0
chr11:62595021|62595333 hsa-miR-6859-5p 0 1 0
chr11:62595021|62595333 hsa-miR-5588-3p 0 1 0
chr11:62595021|62595333 hsa-miR-4524b-5p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr11:62595021|62595333
ORF Type ORF1
Protein Length 50
Nucleotide Length 153
Protein Sequence MFLWMSNNRRDSRPQIIFLRLELASGLRGDLNGEALQKLSSLFSRLHSTS
Nucleotide Sequence TTGTTTCTCTGGATGTCTAATAACAGGAGGGATAGTAGGCCACAGATAATTTTTTTAAGATTAGAGTTGGCTTCTGGCCTTAGAGGAGACCTGAATGGTGAAGCCCTTCAGAAGCTTTCTTCTTTGTTCTCCAGGCTCCATTCGACTTCCTAA
CircID chr11:62595021|62595333
ORF Type ORF2
Protein Length 47
Nucleotide Length 144
Protein Sequence MLLSMPMPSKQSVRAGSGGTGGGFRIALPRDRCFSGCLITGGIVGHR
Nucleotide Sequence ATGCTCCTATCAATGCCAATGCCATCAAAGCAGAGTGTAAGGGCAGGGAGTGGTGGGACTGGTGGTGGGTTTCGGATTGCTCTGCCCAGAGACCGTTGTTTCTCTGGATGTCTAATAACAGGAGGGATAGTAGGCCACAGATAA
CircID chr11:62595021|62595333
ORF Type ORF3
Protein Length 30
Nucleotide Length 90
Protein Sequence MVKPFRSFLLCSPGSIRLPKAAKTPLKIHP
Nucleotide Sequence ATGGTGAAGCCCTTCAGAAGCTTTCTTCTTTGTTCTCCAGGCTCCATTCGACTTCCTAAGGCCGCCAAGACTCCATTGAAGATTCACCCT
CircID chr11:62595021|62595333
ORF Type ORF4
Protein Length 33
Nucleotide Length 102
Protein Sequence MAALGSRMEPGEQRRKLLKGFTIQVSSKARSQL
Nucleotide Sequence TTGGCGGCCTTAGGAAGTCGAATGGAGCCTGGAGAACAAAGAAGAAAGCTTCTGAAGGGCTTCACCATTCAGGTCTCCTCTAAGGCCAGAAGCCAACTCTAA
CircID chr11:62595021|62595333
ORF Type ORF5
Protein Length 56
Nucleotide Length 171
Protein Sequence MWPTIPPVIRHPEKQRSLGRAIRNPPPVPPLPALTLCFDGIGIDRSIRPSGGPPWL
Nucleotide Sequence CTGTGGCCTACTATCCCTCCTGTTATTAGACATCCAGAGAAACAACGGTCTCTGGGCAGAGCAATCCGAAACCCACCACCAGTCCCACCACTCCCTGCCCTTACACTCTGCTTTGATGGCATTGGCATTGATAGGAGCATAAGGCCGTCGGGCGGCCCTCCTTGGCTGTAA
CircID chr11:62595021|62595333
ORF Type ORF6
Protein Length 40
Nucleotide Length 123
Protein Sequence MLLDIQRNNGLWAEQSETHHQSHHSLPLHSALMALALIGA
Nucleotide Sequence CTGTTATTAGACATCCAGAGAAACAACGGTCTCTGGGCAGAGCAATCCGAAACCCACCACCAGTCCCACCACTCCCTGCCCTTACACTCTGCTTTGATGGCATTGGCATTGATAGGAGCATAA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab