CircRNA Information

General Information
circRNA Basic Information
CircID chr11:62595839|62596088
Strand +
CircType exon
Host Gene ENSG00000149480.5;
Algorism CIRI2;
Sequence CAGATCATTTCTGTGGGTTCAAAACCTGGCATGAATGGGGCTGGATTTCAGAAGGGCCTGACTTGTGAGAGTTGCCACAGTGAGTTACGGGGGCACTGGGATGGTGGGGATGGGTGGAAGGCCTGCTGTGGCTCAAGAATCTGAGGGGCTTAGGTAGTATGCTTCTTCCCTGTCCCCCTCCTCTCCGTACTCTACAGCCACACAGTCTGCTCAGTGGTATGCCTGGGGCCCACCTAACATGCAGTGCCGC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr11:62595839|62596088 hsa-miR-214-5p 0 0 1
chr11:62595839|62596088 hsa-miR-214-3p 0 0 1
chr11:62595839|62596088 hsa-miR-217-5p 0 0 1
chr11:62595839|62596088 hsa-miR-217-3p 0 0 1
chr11:62595839|62596088 hsa-miR-526b-5p 0 0 1
chr11:62595839|62596088 hsa-miR-526b-3p 0 0 1
chr11:62595839|62596088 hsa-miR-892a 0 0 1
chr11:62595839|62596088 hsa-miR-541-5p 0 0 1
chr11:62595839|62596088 hsa-miR-541-3p 0 0 1
chr11:62595839|62596088 hsa-miR-1237-5p 0 0 1
chr11:62595839|62596088 hsa-miR-1237-3p 0 0 1
chr11:62595839|62596088 hsa-miR-1208 0 0 1
chr11:62595839|62596088 hsa-miR-1258 0 0 1
chr11:62595839|62596088 hsa-miR-513b-5p 0 0 1
chr11:62595839|62596088 hsa-miR-513b-3p 0 0 1
chr11:62595839|62596088 hsa-miR-1825 1 1 1
chr11:62595839|62596088 hsa-miR-296-5p 0 0 1
chr11:62595839|62596088 hsa-miR-654-5p 1 1 1
chr11:62595839|62596088 hsa-miR-342-3p 0 0 1
chr11:62595839|62596088 hsa-miR-644 0 0 1
chr11:62595839|62596088 hsa-miR-147 0 0 1
chr11:62595839|62596088 hsa-miR-1183 0 1 0
chr11:62595839|62596088 hsa-miR-1291 1 0 0
chr11:62595839|62596088 hsa-miR-3142 0 1 0
chr11:62595839|62596088 hsa-miR-4298 1 0 0
chr11:62595839|62596088 hsa-miR-4494 0 1 0
chr11:62595839|62596088 hsa-miR-4721 1 0 0
chr11:62595839|62596088 hsa-miR-4739 1 0 0
chr11:62595839|62596088 hsa-miR-4779 0 1 0
chr11:62595839|62596088 hsa-miR-5090 1 0 0
chr11:62595839|62596088 hsa-miR-5739 0 1 0
chr11:62595839|62596088 hsa-miR-6077 0 1 0
chr11:62595839|62596088 hsa-miR-6860 1 0 0
chr11:62595839|62596088 hsa-miR-146a-3p 1 1 0
chr11:62595839|62596088 hsa-miR-125b-2-3p 1 1 0
chr11:62595839|62596088 hsa-miR-7106-5p 1 0 0
chr11:62595839|62596088 hsa-miR-4687-3p 1 0 0
chr11:62595839|62596088 hsa-miR-6720-5p 1 1 0
chr11:62595839|62596088 hsa-miR-766-3p 1 0 0
chr11:62595839|62596088 hsa-miR-210-5p 1 0 0
chr11:62595839|62596088 hsa-miR-1225-3p 1 0 0
chr11:62595839|62596088 hsa-miR-7847-3p 1 0 0
chr11:62595839|62596088 hsa-miR-874-5p 1 1 0
chr11:62595839|62596088 hsa-miR-6840-5p 1 0 0
chr11:62595839|62596088 hsa-miR-181a-2-3p 0 1 0
chr11:62595839|62596088 hsa-miR-770-5p 1 0 0
chr11:62595839|62596088 hsa-miR-3189-5p 1 1 0
chr11:62595839|62596088 hsa-miR-7845-5p 1 0 0
chr11:62595839|62596088 hsa-miR-6782-5p 1 0 0
chr11:62595839|62596088 hsa-miR-6810-5p 1 1 0
chr11:62595839|62596088 hsa-miR-5008-5p 1 0 0
chr11:62595839|62596088 hsa-miR-6858-3p 1 0 0
chr11:62595839|62596088 hsa-miR-7109-3p 1 0 0
chr11:62595839|62596088 hsa-miR-6763-3p 1 0 0
chr11:62595839|62596088 hsa-miR-1247-5p 1 1 0
chr11:62595839|62596088 hsa-miR-1304-3p 0 1 0
chr11:62595839|62596088 hsa-miR-6736-3p 1 0 0
chr11:62595839|62596088 hsa-miR-6824-5p 1 0 0
chr11:62595839|62596088 hsa-miR-6769a-3p 1 0 0
chr11:62595839|62596088 hsa-miR-6870-3p 0 1 0
chr11:62595839|62596088 hsa-miR-1226-3p 1 0 0
chr11:62595839|62596088 hsa-miR-6813-3p 1 0 0
chr11:62595839|62596088 hsa-miR-1296-5p 1 0 0
chr11:62595839|62596088 hsa-miR-6882-5p 0 1 0
chr11:62595839|62596088 hsa-miR-6886-3p 0 1 0
chr11:62595839|62596088 hsa-miR-4749-3p 1 0 0
chr11:62595839|62596088 hsa-miR-4746-5p 1 0 0
chr11:62595839|62596088 hsa-miR-4649-3p 1 0 0
chr11:62595839|62596088 hsa-miR-6777-3p 1 0 0
chr11:62595839|62596088 hsa-miR-449b-3p 0 1 0
chr11:62595839|62596088 hsa-miR-6729-3p 0 1 0
chr11:62595839|62596088 hsa-miR-371b-3p 0 1 0
chr11:62595839|62596088 hsa-miR-6890-3p 1 0 0
chr11:62595839|62596088 hsa-miR-3162-3p 1 0 0
chr11:62595839|62596088 hsa-miR-6743-5p 1 0 0
chr11:62595839|62596088 hsa-miR-11181-3p 1 0 0
chr11:62595839|62596088 hsa-miR-6797-5p 1 0 0
chr11:62595839|62596088 hsa-miR-7111-5p 1 0 0
chr11:62595839|62596088 hsa-miR-4728-5p 1 1 0
chr11:62595839|62596088 hsa-miR-6780b-5p 1 0 0
chr11:62595839|62596088 hsa-miR-328-5p 1 0 0
chr11:62595839|62596088 hsa-miR-4749-5p 1 0 0
chr11:62595839|62596088 hsa-miR-6794-5p 1 1 0
chr11:62595839|62596088 hsa-miR-6795-5p 1 1 0
chr11:62595839|62596088 hsa-miR-6848-5p 1 0 0
chr11:62595839|62596088 hsa-miR-6858-5p 1 1 0
chr11:62595839|62596088 hsa-miR-6887-5p 1 1 0
chr11:62595839|62596088 hsa-miR-3187-5p 1 1 0
chr11:62595839|62596088 hsa-miR-6831-5p 0 1 0
chr11:62595839|62596088 hsa-miR-6885-5p 1 1 0
chr11:62595839|62596088 hsa-miR-1199-5p 1 0 0
chr11:62595839|62596088 hsa-miR-6773-5p 0 1 0
chr11:62595839|62596088 hsa-miR-6891-5p 1 0 0
chr11:62595839|62596088 hsa-miR-4716-3p 0 1 0
chr11:62595839|62596088 hsa-miR-6724-5p 1 1 0
chr11:62595839|62596088 hsa-miR-6511a-3p 1 1 0
chr11:62595839|62596088 hsa-miR-6862-3p 1 0 0
chr11:62595839|62596088 hsa-miR-6775-3p 1 0 0
chr11:62595839|62596088 hsa-miR-10392-3p 1 0 0
chr11:62595839|62596088 hsa-miR-6511b-3p 1 0 0
chr11:62595839|62596088 hsa-miR-6512-3p 1 1 0
chr11:62595839|62596088 hsa-miR-6751-3p 1 0 0
chr11:62595839|62596088 hsa-miR-6807-3p 0 1 0
chr11:62595839|62596088 hsa-miR-5588-3p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr11:62595839|62596088
ORF Type ORF1
Protein Length 37
Nucleotide Length 114
Protein Sequence MNGAGFQKGLTCESCHSELRGHWDGGDGWKACCGSRI
Nucleotide Sequence ATGAATGGGGCTGGATTTCAGAAGGGCCTGACTTGTGAGAGTTGCCACAGTGAGTTACGGGGGCACTGGGATGGTGGGGATGGGTGGAAGGCCTGCTGTGGCTCAAGAATCTGA
CircID chr11:62595839|62596088
ORF Type ORF2
Protein Length 27
Nucleotide Length 81
Protein Sequence MSPSSPYSTATQSAQWYAWGPPNMQCR
Nucleotide Sequence CTGTCCCCCTCCTCTCCGTACTCTACAGCCACACAGTCTGCTCAGTGGTATGCCTGGGGCCCACCTAACATGCAGTGCCGC
CircID chr11:62595839|62596088
ORF Type ORF3
Protein Length 51
Nucleotide Length 153
Protein Sequence MGWWGWVEGLLWLKNLRGLGSMLLPCPPPLRTLQPHSLLSGMPGAHLTCSA
Nucleotide Sequence CTGGGATGGTGGGGATGGGTGGAAGGCCTGCTGTGGCTCAAGAATCTGAGGGGCTTAGGTAGTATGCTTCTTCCCTGTCCCCCTCCTCTCCGTACTCTACAGCCACACAGTCTGCTCAGTGGTATGCCTGGGGCCCACCTAACATGCAGTGCC
CircID chr11:62595839|62596088
ORF Type ORF4
Protein Length 79
Nucleotide Length 240
Protein Sequence MHVRWAPGIPLSRLCGCRVRRGGGQGRSILPKPLRFLSHSRPSTHPHHPSAPVTHCGNSHKSGPSEIQPHSCQVLNPQK
Nucleotide Sequence CTGCATGTTAGGTGGGCCCCAGGCATACCACTGAGCAGACTGTGTGGCTGTAGAGTACGGAGAGGAGGGGGACAGGGAAGAAGCATACTACCTAAGCCCCTCAGATTCTTGAGCCACAGCAGGCCTTCCACCCATCCCCACCATCCCAGTGCCCCCGTAACTCACTGTGGCAACTCTCACAAGTCAGGCCCTTCTGAAATCCAGCCCCATTCATGCCAGGTTTTGAACCCACAGAAATGA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab