CircRNA Information

General Information
circRNA Basic Information
CircID chr11:62625135|62625305
Strand +
CircType exon
Host Gene ENSG00000089597.15;
Algorism CIRI2;
Sequence CACCCCTTACCCCGGACAGGATGAATGGATCAAAGGAGTGAGGTTGCTAAAGAACATCCTTTTCCCTCTCATTCTACCCTTTTCCTCTCCCCGATTCCTTGTAGAGCTGCTGCAATTCTTAGAGGGGCAGTTCTACCTCCTCTGTCCCTCGGCAGAAAGACGTTTCCACAC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr11:62625135|62625305 hsa-let-7b-5p 0 0 1
chr11:62625135|62625305 hsa-let-7b-3p 0 0 1
chr11:62625135|62625305 hsa-let-7c-5p 0 0 1
chr11:62625135|62625305 hsa-let-7c-3p 0 0 1
chr11:62625135|62625305 hsa-let-7d-5p 0 0 1
chr11:62625135|62625305 hsa-let-7d-3p 0 0 1
chr11:62625135|62625305 hsa-let-7e-5p 0 0 1
chr11:62625135|62625305 hsa-let-7e-3p 0 0 1
chr11:62625135|62625305 hsa-miR-98-5p 0 0 1
chr11:62625135|62625305 hsa-miR-98-3p 0 0 1
chr11:62625135|62625305 hsa-miR-107 1 0 1
chr11:62625135|62625305 hsa-let-7g-5p 0 0 1
chr11:62625135|62625305 hsa-let-7g-3p 0 0 1
chr11:62625135|62625305 hsa-let-7i-5p 0 0 1
chr11:62625135|62625305 hsa-let-7i-3p 0 0 1
chr11:62625135|62625305 hsa-miR-555 0 0 1
chr11:62625135|62625305 hsa-miR-624-5p 0 0 1
chr11:62625135|62625305 hsa-miR-624-3p 0 0 1
chr11:62625135|62625305 hsa-miR-640 0 1 1
chr11:62625135|62625305 hsa-miR-646 0 0 1
chr11:62625135|62625305 hsa-miR-1301-5p 0 0 1
chr11:62625135|62625305 hsa-miR-1301-3p 0 0 1
chr11:62625135|62625305 hsa-miR-1265 0 0 1
chr11:62625135|62625305 hsa-miR-1283 0 0 1
chr11:62625135|62625305 hsa-miR-542-5p 0 0 1
chr11:62625135|62625305 hsa-miR-324-3p 0 0 1
chr11:62625135|62625305 hsa-miR-483-3p 0 1 1
chr11:62625135|62625305 hsa-miR-103 0 0 1
chr11:62625135|62625305 hsa-let-7a 0 0 1
chr11:62625135|62625305 hsa-let-7f 0 0 1
chr11:62625135|62625305 hsa-miR-544 0 0 1
chr11:62625135|62625305 hsa-miR-1826 0 0 1
chr11:62625135|62625305 hsa-miR-638 1 0 0
chr11:62625135|62625305 hsa-miR-3132 1 1 0
chr11:62625135|62625305 hsa-miR-4421 0 1 0
chr11:62625135|62625305 hsa-miR-4510 1 1 0
chr11:62625135|62625305 hsa-miR-4660 1 1 0
chr11:62625135|62625305 hsa-miR-4706 1 0 0
chr11:62625135|62625305 hsa-miR-4739 1 0 0
chr11:62625135|62625305 hsa-miR-6124 1 1 0
chr11:62625135|62625305 hsa-miR-6129 1 0 0
chr11:62625135|62625305 hsa-miR-7706 1 0 0
chr11:62625135|62625305 hsa-miR-8089 1 0 0
chr11:62625135|62625305 hsa-miR-12120 1 0 0
chr11:62625135|62625305 hsa-miR-4433b-3p 1 0 0
chr11:62625135|62625305 hsa-miR-6734-5p 1 1 0
chr11:62625135|62625305 hsa-miR-7106-5p 1 0 0
chr11:62625135|62625305 hsa-miR-1236-5p 1 0 0
chr11:62625135|62625305 hsa-miR-6757-5p 1 0 0
chr11:62625135|62625305 hsa-miR-6880-5p 1 0 0
chr11:62625135|62625305 hsa-miR-6746-5p 1 0 0
chr11:62625135|62625305 hsa-miR-6727-5p 1 0 0
chr11:62625135|62625305 hsa-miR-4655-5p 1 0 0
chr11:62625135|62625305 hsa-miR-4677-5p 0 1 0
chr11:62625135|62625305 hsa-miR-197-5p 1 1 0
chr11:62625135|62625305 hsa-miR-7845-5p 0 1 0
chr11:62625135|62625305 hsa-miR-6716-5p 1 0 0
chr11:62625135|62625305 hsa-miR-3126-5p 0 1 0
chr11:62625135|62625305 hsa-miR-486-3p 1 0 0
chr11:62625135|62625305 hsa-miR-6881-5p 0 1 0
chr11:62625135|62625305 hsa-miR-4793-5p 1 0 0
chr11:62625135|62625305 hsa-miR-1229-5p 0 1 0
chr11:62625135|62625305 hsa-miR-30c-2-3p 1 0 0
chr11:62625135|62625305 hsa-miR-4650-3p 1 1 0
chr11:62625135|62625305 hsa-miR-6847-5p 0 1 0
chr11:62625135|62625305 hsa-miR-149-3p 1 0 0
chr11:62625135|62625305 hsa-miR-6824-5p 1 0 0
chr11:62625135|62625305 hsa-miR-181b-5p 0 1 0
chr11:62625135|62625305 hsa-miR-423-5p 0 1 0
chr11:62625135|62625305 hsa-miR-4750-5p 1 0 0
chr11:62625135|62625305 hsa-miR-181c-5p 0 1 0
chr11:62625135|62625305 hsa-miR-4766-3p 0 1 0
chr11:62625135|62625305 hsa-miR-6812-5p 1 0 0
chr11:62625135|62625305 hsa-miR-6870-5p 1 0 0
chr11:62625135|62625305 hsa-miR-1343-5p 1 0 0
chr11:62625135|62625305 hsa-miR-1249-5p 1 0 0
chr11:62625135|62625305 hsa-miR-6763-5p 1 0 0
chr11:62625135|62625305 hsa-miR-6779-5p 1 0 0
chr11:62625135|62625305 hsa-miR-6797-5p 0 1 0
chr11:62625135|62625305 hsa-miR-6875-5p 0 1 0
chr11:62625135|62625305 hsa-miR-7111-5p 0 1 0
chr11:62625135|62625305 hsa-miR-4728-5p 1 1 0
chr11:62625135|62625305 hsa-miR-5196-5p 1 0 0
chr11:62625135|62625305 hsa-miR-6777-5p 1 1 0
chr11:62625135|62625305 hsa-miR-6794-5p 1 0 0
chr11:62625135|62625305 hsa-miR-6795-5p 1 0 0
chr11:62625135|62625305 hsa-miR-6887-5p 1 0 0
chr11:62625135|62625305 hsa-miR-6889-5p 1 0 0
chr11:62625135|62625305 hsa-miR-6831-5p 0 1 0
chr11:62625135|62625305 hsa-miR-939-5p 1 0 0
chr11:62625135|62625305 hsa-miR-6731-5p 1 1 0
chr11:62625135|62625305 hsa-miR-6758-5p 1 1 0
chr11:62625135|62625305 hsa-miR-6891-5p 1 0 0
chr11:62625135|62625305 hsa-miR-6859-5p 0 1 0
chr11:62625135|62625305 hsa-miR-519a-2-5p 0 1 0
chr11:62625135|62625305 hsa-miR-520b-5p 0 1 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr11:62625135|62625305
ORF Type ORF1
Protein Length 49
Nucleotide Length 147
Protein Sequence MDQRSEVAKEHPFPSHSTLFLSPIPCRAAAILRGAVLPPLSLGRKTFPH
Nucleotide Sequence ATGGATCAAAGGAGTGAGGTTGCTAAAGAACATCCTTTTCCCTCTCATTCTACCCTTTTCCTCTCCCCGATTCCTTGTAGAGCTGCTGCAATTCTTAGAGGGGCAGTTCTACCTCCTCTGTCCCTCGGCAGAAAGACGTTTCCACAC
CircID chr11:62625135|62625305
ORF Type ORF2
Protein Length 42
Nucleotide Length 126
Protein Sequence MLKNILFPLILPFSSPRFLVELLQFLEGQFYLLCPSAERRFH
Nucleotide Sequence TTGCTAAAGAACATCCTTTTCCCTCTCATTCTACCCTTTTCCTCTCCCCGATTCCTTGTAGAGCTGCTGCAATTCTTAGAGGGGCAGTTCTACCTCCTCTGTCCCTCGGCAGAAAGACGTTTCCAC
CircID chr11:62625135|62625305
ORF Type ORF3
Protein Length 28
Nucleotide Length 87
Protein Sequence MPRDRGGRTAPLRIAAALQGIGERKRVE
Nucleotide Sequence CTGCCGAGGGACAGAGGAGGTAGAACTGCCCCTCTAAGAATTGCAGCAGCTCTACAAGGAATCGGGGAGAGGAAAAGGGTAGAATGA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab