CircRNA Information

General Information
circRNA Basic Information
CircID chr11:62629892|62630394
Strand -
CircType exon
Host Gene ENSG00000089597.15;
Algorism CIRI2;
Sequence CTCAGGACCATTGAACACAGATGGTTCGTTCATGTCATTCCAGACAAAGAGGTTGGGAGCTGAGCCCTGGGAACGTGGGCAGAAAATGGGGACAGAAGGACAGAGGGGAGGAAGAAGACAAACAGTGTCAGAGAAGAGAGCTCCTAGGAATCTAAAAAGATGCATTTTTCAGGGCCCTCCCCGGATCATCAAGGCCCCCTGATATGTTGCAGGCAATCAACCATAGAAGGGTTGGCAAGCCGAGAGAGATTCAGGGAGGCAGGTGGAACAGACAGACGCAGGTCATGGGGAGAGGCCTTCCCTACCTCATAATTGTCATAGCTGAACATGTTAGCCCACCAGGCCCTCATCGTGGGATTAGTGAAGTCAGGGTAACCAGCTGAGCCTGGCCAGCACCAGCC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr11:62629892|62630394 hsa-let-7b-5p 0 0 1
chr11:62629892|62630394 hsa-let-7b-3p 0 0 1
chr11:62629892|62630394 hsa-let-7c-5p 0 0 1
chr11:62629892|62630394 hsa-let-7c-3p 0 0 1
chr11:62629892|62630394 hsa-let-7d-5p 0 0 1
chr11:62629892|62630394 hsa-let-7d-3p 0 0 1
chr11:62629892|62630394 hsa-let-7e-5p 0 0 1
chr11:62629892|62630394 hsa-let-7e-3p 0 0 1
chr11:62629892|62630394 hsa-miR-98-5p 0 0 1
chr11:62629892|62630394 hsa-miR-98-3p 0 0 1
chr11:62629892|62630394 hsa-miR-10a-5p 0 0 1
chr11:62629892|62630394 hsa-miR-10a-3p 0 0 1
chr11:62629892|62630394 hsa-miR-10b-5p 0 0 1
chr11:62629892|62630394 hsa-miR-10b-3p 0 0 1
chr11:62629892|62630394 hsa-let-7g-5p 0 0 1
chr11:62629892|62630394 hsa-let-7g-3p 0 0 1
chr11:62629892|62630394 hsa-let-7i-5p 0 0 1
chr11:62629892|62630394 hsa-let-7i-3p 0 0 1
chr11:62629892|62630394 hsa-miR-150-5p 0 0 1
chr11:62629892|62630394 hsa-miR-150-3p 0 0 1
chr11:62629892|62630394 hsa-miR-206 0 0 1
chr11:62629892|62630394 hsa-miR-384 0 0 1
chr11:62629892|62630394 hsa-miR-425-5p 0 0 1
chr11:62629892|62630394 hsa-miR-425-3p 0 0 1
chr11:62629892|62630394 hsa-miR-452-5p 0 0 1
chr11:62629892|62630394 hsa-miR-452-3p 0 0 1
chr11:62629892|62630394 hsa-miR-484 0 1 1
chr11:62629892|62630394 hsa-miR-511-5p 0 0 1
chr11:62629892|62630394 hsa-miR-511-3p 0 0 1
chr11:62629892|62630394 hsa-miR-202-5p 0 0 1
chr11:62629892|62630394 hsa-miR-202-3p 0 0 1
chr11:62629892|62630394 hsa-miR-563 0 0 1
chr11:62629892|62630394 hsa-miR-584-5p 0 0 1
chr11:62629892|62630394 hsa-miR-584-3p 0 0 1
chr11:62629892|62630394 hsa-miR-613 0 0 1
chr11:62629892|62630394 hsa-miR-617 0 0 1
chr11:62629892|62630394 hsa-miR-631 0 0 1
chr11:62629892|62630394 hsa-miR-632 0 0 1
chr11:62629892|62630394 hsa-miR-662 0 1 1
chr11:62629892|62630394 hsa-miR-541-5p 0 0 1
chr11:62629892|62630394 hsa-miR-541-3p 0 0 1
chr11:62629892|62630394 hsa-miR-708-5p 0 0 1
chr11:62629892|62630394 hsa-miR-708-3p 0 0 1
chr11:62629892|62630394 hsa-miR-216b-5p 0 0 1
chr11:62629892|62630394 hsa-miR-216b-3p 0 0 1
chr11:62629892|62630394 hsa-miR-942-5p 0 0 1
chr11:62629892|62630394 hsa-miR-942-3p 0 0 1
chr11:62629892|62630394 hsa-miR-1231 0 1 1
chr11:62629892|62630394 hsa-miR-1236-5p 0 0 1
chr11:62629892|62630394 hsa-miR-1236-3p 0 0 1
chr11:62629892|62630394 hsa-miR-1237-5p 0 0 1
chr11:62629892|62630394 hsa-miR-1237-3p 0 0 1
chr11:62629892|62630394 hsa-miR-1200 0 0 1
chr11:62629892|62630394 hsa-miR-1208 0 0 1
chr11:62629892|62630394 hsa-miR-1291 0 1 1
chr11:62629892|62630394 hsa-miR-1299 0 0 1
chr11:62629892|62630394 hsa-miR-1248 0 0 1
chr11:62629892|62630394 hsa-miR-1307-5p 0 0 1
chr11:62629892|62630394 hsa-miR-1307-3p 0 0 1
chr11:62629892|62630394 hsa-miR-654-5p 0 1 1
chr11:62629892|62630394 hsa-miR-409-5p 0 1 1
chr11:62629892|62630394 hsa-miR-28-5p 0 1 1
chr11:62629892|62630394 hsa-miR-1207-3p 0 1 1
chr11:62629892|62630394 hsa-miR-875-3p 0 0 1
chr11:62629892|62630394 hsa-miR-324-3p 0 0 1
chr11:62629892|62630394 hsa-miR-125a-5p 0 0 1
chr11:62629892|62630394 hsa-miR-125b 0 0 1
chr11:62629892|62630394 hsa-miR-138 0 0 1
chr11:62629892|62630394 hsa-let-7a 0 0 1
chr11:62629892|62630394 hsa-let-7f 0 0 1
chr11:62629892|62630394 hsa-miR-1 0 0 1
chr11:62629892|62630394 hsa-miR-544 0 0 1
chr11:62629892|62630394 hsa-miR-24 0 0 1
chr11:62629892|62630394 hsa-miR-346 1 0 0
chr11:62629892|62630394 hsa-miR-2861 0 1 0
chr11:62629892|62630394 hsa-miR-3193 0 1 0
chr11:62629892|62630394 hsa-miR-3615 0 1 0
chr11:62629892|62630394 hsa-miR-3907 1 0 0
chr11:62629892|62630394 hsa-miR-4437 0 1 0
chr11:62629892|62630394 hsa-miR-4458 0 1 0
chr11:62629892|62630394 hsa-miR-4466 1 0 0
chr11:62629892|62630394 hsa-miR-4493 0 1 0
chr11:62629892|62630394 hsa-miR-4656 1 0 0
chr11:62629892|62630394 hsa-miR-5193 1 0 0
chr11:62629892|62630394 hsa-miR-138-5p 1 1 0
chr11:62629892|62630394 hsa-miR-4435 0 1 0
chr11:62629892|62630394 hsa-miR-6749-3p 1 1 0
chr11:62629892|62630394 hsa-miR-6747-3p 0 1 0
chr11:62629892|62630394 hsa-miR-1972 1 0 0
chr11:62629892|62630394 hsa-miR-6892-3p 1 0 0
chr11:62629892|62630394 hsa-miR-6881-3p 1 0 0
chr11:62629892|62630394 hsa-miR-3692-5p 0 1 0
chr11:62629892|62630394 hsa-miR-4755-3p 0 1 0
chr11:62629892|62630394 hsa-miR-6890-5p 0 1 0
chr11:62629892|62630394 hsa-miR-145-3p 0 1 0
chr11:62629892|62630394 hsa-miR-24-3p 0 1 0
chr11:62629892|62630394 hsa-miR-6875-3p 0 1 0
chr11:62629892|62630394 hsa-miR-874-3p 1 0 0
chr11:62629892|62630394 hsa-miR-6873-3p 0 1 0
chr11:62629892|62630394 hsa-miR-7110-3p 0 1 0
chr11:62629892|62630394 hsa-miR-6787-3p 0 1 0
chr11:62629892|62630394 hsa-miR-1915-5p 1 0 0
chr11:62629892|62630394 hsa-miR-6845-3p 1 0 0
chr11:62629892|62630394 hsa-miR-6868-3p 0 1 0
chr11:62629892|62630394 hsa-miR-656-5p 0 1 0
chr11:62629892|62630394 hsa-miR-6805-5p 0 1 0
chr11:62629892|62630394 hsa-miR-6728-3p 1 0 0
chr11:62629892|62630394 hsa-miR-345-3p 1 1 0
chr11:62629892|62630394 hsa-miR-6740-3p 0 1 0
chr11:62629892|62630394 hsa-miR-5088-5p 0 1 0
chr11:62629892|62630394 hsa-miR-1226-5p 0 1 0
chr11:62629892|62630394 hsa-miR-4640-5p 1 1 0
chr11:62629892|62630394 hsa-miR-7113-3p 0 1 0
chr11:62629892|62630394 hsa-miR-3191-5p 1 0 0
chr11:62629892|62630394 hsa-miR-4743-3p 1 1 0
chr11:62629892|62630394 hsa-miR-6809-3p 1 0 0
chr11:62629892|62630394 hsa-miR-7111-3p 1 1 0
chr11:62629892|62630394 hsa-miR-6780a-3p 1 1 0
chr11:62629892|62630394 hsa-miR-1266-3p 1 0 0
chr11:62629892|62630394 hsa-miR-339-5p 1 0 0
chr11:62629892|62630394 hsa-miR-4646-3p 1 0 0
chr11:62629892|62630394 hsa-miR-7160-3p 0 1 0
chr11:62629892|62630394 hsa-miR-3120-5p 0 1 0
chr11:62629892|62630394 hsa-miR-6889-3p 1 0 0
chr11:62629892|62630394 hsa-miR-345-5p 1 0 0
chr11:62629892|62630394 hsa-miR-7106-3p 0 1 0
chr11:62629892|62630394 hsa-miR-5571-3p 0 1 0
chr11:62629892|62630394 hsa-miR-6828-3p 1 0 0
chr11:62629892|62630394 hsa-miR-4778-3p 0 1 0
chr11:62629892|62630394 hsa-miR-6887-3p 1 0 0
chr11:62629892|62630394 hsa-miR-6778-3p 0 1 0
chr11:62629892|62630394 hsa-miR-2276-5p 1 1 0
chr11:62629892|62630394 hsa-miR-6782-3p 1 0 0
chr11:62629892|62630394 hsa-miR-6895-3p 0 1 0
chr11:62629892|62630394 hsa-miR-6826-3p 1 1 0
chr11:62629892|62630394 hsa-miR-6886-3p 1 0 0
chr11:62629892|62630394 hsa-miR-5088-3p 1 0 0
chr11:62629892|62630394 hsa-miR-6738-3p 1 1 0
chr11:62629892|62630394 hsa-miR-6795-3p 1 0 0
chr11:62629892|62630394 hsa-miR-6760-3p 1 0 0
chr11:62629892|62630394 hsa-miR-6748-3p 1 0 0
chr11:62629892|62630394 hsa-miR-670-5p 0 1 0
chr11:62629892|62630394 hsa-miR-6734-3p 0 1 0
chr11:62629892|62630394 hsa-miR-6780b-3p 1 0 0
chr11:62629892|62630394 hsa-miR-6888-3p 1 1 0
chr11:62629892|62630394 hsa-miR-3127-3p 1 0 0
chr11:62629892|62630394 hsa-miR-4685-3p 1 0 0
chr11:62629892|62630394 hsa-miR-4685-5p 0 1 0
chr11:62629892|62630394 hsa-miR-6883-5p 0 1 0
chr11:62629892|62630394 hsa-miR-1271-3p 0 1 0
chr11:62629892|62630394 hsa-miR-3116 0 1 0
chr11:62629892|62630394 hsa-miR-6791-3p 1 0 0
chr11:62629892|62630394 hsa-miR-6877-3p 0 1 0
chr11:62629892|62630394 hsa-miR-6785-5p 0 1 0
chr11:62629892|62630394 hsa-miR-10398-5p 1 0 0
chr11:62629892|62630394 hsa-miR-7107-3p 0 1 0
chr11:62629892|62630394 hsa-miR-6837-5p 0 1 0
chr11:62629892|62630394 hsa-miR-4723-3p 1 1 0
chr11:62629892|62630394 hsa-miR-6769b-3p 1 0 0
chr11:62629892|62630394 hsa-miR-6744-3p 0 1 0
chr11:62629892|62630394 hsa-miR-619-5p 0 1 0
chr11:62629892|62630394 hsa-miR-6764-5p 0 1 0
chr11:62629892|62630394 hsa-miR-6824-3p 1 0 0
chr11:62629892|62630394 hsa-miR-4676-3p 0 1 0
chr11:62629892|62630394 hsa-miR-519a-3p 0 1 0
chr11:62629892|62630394 hsa-miR-519b-3p 0 1 0
chr11:62629892|62630394 hsa-miR-519c-3p 1 1 0
chr11:62629892|62630394 hsa-miR-301b-5p 0 1 0
chr11:62629892|62630394 hsa-miR-627-3p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr11:62629892|62630394
ORF Type ORF1
Protein Length 26
Nucleotide Length 81
Protein Sequence MGTWAENGDRRTEGRKKTNSVREESS
Nucleotide Sequence CTGGGAACGTGGGCAGAAAATGGGGACAGAAGGACAGAGGGGAGGAAGAAGACAAACAGTGTCAGAGAAGAGAGCTCCTAG
CircID chr11:62629892|62630394
ORF Type ORF2
Protein Length 50
Nucleotide Length 153
Protein Sequence MHFSGPSPDHQGPLICCRQSTIEGLASRERFREAGGTDRRRSWGEAFPTS
Nucleotide Sequence ATGCATTTTTCAGGGCCCTCCCCGGATCATCAAGGCCCCCTGATATGTTGCAGGCAATCAACCATAGAAGGGTTGGCAAGCCGAGAGAGATTCAGGGAGGCAGGTGGAACAGACAGACGCAGGTCATGGGGAGAGGCCTTCCCTACCTCATAA
CircID chr11:62629892|62630394
ORF Type ORF3
Protein Length 63
Nucleotide Length 192
Protein Sequence MNTDGSFMSFQTKRLGAEPWERGQKMGTEGQRGGRRQTVSEKRAPRNLKRCIFQGPPRIIKAP
Nucleotide Sequence TTGAACACAGATGGTTCGTTCATGTCATTCCAGACAAAGAGGTTGGGAGCTGAGCCCTGGGAACGTGGGCAGAAAATGGGGACAGAAGGACAGAGGGGAGGAAGAAGACAAACAGTGTCAGAGAAGAGAGCTCCTAGGAATCTAAAAAGATGCATTTTTCAGGGCCCTCCCCGGATCATCAAGGCCCCCTGA
CircID chr11:62629892|62630394
ORF Type ORF4
Protein Length 44
Nucleotide Length 135
Protein Sequence MVRSCHSRQRGWELSPGNVGRKWGQKDRGEEEDKQCQRRELLGI
Nucleotide Sequence ATGGTTCGTTCATGTCATTCCAGACAAAGAGGTTGGGAGCTGAGCCCTGGGAACGTGGGCAGAAAATGGGGACAGAAGGACAGAGGGGAGGAAGAAGACAAACAGTGTCAGAGAAGAGAGCTCCTAGGAATCTAA
CircID chr11:62629892|62630394
ORF Type ORF5
Protein Length 59
Nucleotide Length 180
Protein Sequence MLQAINHRRVGKPREIQGGRWNRQTQVMGRGLPYLIIVIAEHVSPPGPHRGISEVRVTS
Nucleotide Sequence ATGTTGCAGGCAATCAACCATAGAAGGGTTGGCAAGCCGAGAGAGATTCAGGGAGGCAGGTGGAACAGACAGACGCAGGTCATGGGGAGAGGCCTTCCCTACCTCATAATTGTCATAGCTGAACATGTTAGCCCACCAGGCCCTCATCGTGGGATTAGTGAAGTCAGGGTAACCAGCTGA
CircID chr11:62629892|62630394
ORF Type ORF6
Protein Length 53
Nucleotide Length 162
Protein Sequence MRAWWANMFSYDNYEVGKASPHDLRLSVPPASLNLSRLANPSMVDCLQHIRGP
Nucleotide Sequence ATGAGGGCCTGGTGGGCTAACATGTTCAGCTATGACAATTATGAGGTAGGGAAGGCCTCTCCCCATGACCTGCGTCTGTCTGTTCCACCTGCCTCCCTGAATCTCTCTCGGCTTGCCAACCCTTCTATGGTTGATTGCCTGCAACATATCAGGGGGCCTTGA
CircID chr11:62629892|62630394
ORF Type ORF7
Protein Length 33
Nucleotide Length 102
Protein Sequence MTLFVFFLPSVLLSPFSAHVPRAQLPTSLSGMT
Nucleotide Sequence CTGACACTGTTTGTCTTCTTCCTCCCCTCTGTCCTTCTGTCCCCATTTTCTGCCCACGTTCCCAGGGCTCAGCTCCCAACCTCTTTGTCTGGAATGACATGA
CircID chr11:62629892|62630394
ORF Type ORF8
Protein Length 28
Nucleotide Length 87
Protein Sequence MPTLLWLIACNISGGLDDPGRALKNASF
Nucleotide Sequence TTGCCAACCCTTCTATGGTTGATTGCCTGCAACATATCAGGGGGCCTTGATGATCCGGGGAGGGCCCTGAAAAATGCATCTTTTTAG
CircID chr11:62629892|62630394
ORF Type ORF9
Protein Length 28
Nucleotide Length 87
Protein Sequence MSSSSPLSFCPHFLPTFPGLSSQPLCLE
Nucleotide Sequence TTGTCTTCTTCCTCCCCTCTGTCCTTCTGTCCCCATTTTCTGCCCACGTTCCCAGGGCTCAGCTCCCAACCTCTTTGTCTGGAATGA
CircID chr11:62629892|62630394
ORF Type ORF10
Protein Length 55
Nucleotide Length 165
Protein Sequence MHLFRFLGALFSDTVCLLPPLCPSVPIFCPRSQGSAPNLFVWNDMNEPSVFNGPE
Nucleotide Sequence ATGCATCTTTTTAGATTCCTAGGAGCTCTCTTCTCTGACACTGTTTGTCTTCTTCCTCCCCTCTGTCCTTCTGTCCCCATTTTCTGCCCACGTTCCCAGGGCTCAGCTCCCAACCTCTTTGTCTGGAATGACATGAACGAACCATCTGTGTTCAATGGTCCTGAG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab