CircRNA Information

General Information
circRNA Basic Information
CircID chr11:62647354|62647477
Strand +
CircType exon
Host Gene ENSG00000185085.2;
Algorism CIRI2;
Sequence CCCCAGCCCTGTGCTACTGTTCCGTGCTGCTTCGGGGGCTGCTGGCCGCCCTCTTGGGCCATTGGGAAGCCTCTCGCCACCCTGACACGACCCACTCCCCCTGGCACCTGGAGGCATCCTGCAC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr11:62647354|62647477 hsa-miR-15a-5p 0 0 1
chr11:62647354|62647477 hsa-miR-15a-3p 0 0 1
chr11:62647354|62647477 hsa-miR-187-5p 0 0 1
chr11:62647354|62647477 hsa-miR-187-3p 0 0 1
chr11:62647354|62647477 hsa-miR-15b-5p 0 0 1
chr11:62647354|62647477 hsa-miR-15b-3p 0 0 1
chr11:62647354|62647477 hsa-miR-195-5p 0 0 1
chr11:62647354|62647477 hsa-miR-195-3p 0 0 1
chr11:62647354|62647477 hsa-miR-424-5p 0 0 1
chr11:62647354|62647477 hsa-miR-424-3p 0 0 1
chr11:62647354|62647477 hsa-miR-497-5p 0 0 1
chr11:62647354|62647477 hsa-miR-497-3p 0 0 1
chr11:62647354|62647477 hsa-miR-1286 0 0 1
chr11:62647354|62647477 hsa-miR-886-5p 0 0 1
chr11:62647354|62647477 hsa-miR-16 0 0 1
chr11:62647354|62647477 hsa-miR-220c 0 0 1
chr11:62647354|62647477 hsa-miR-107 1 0 0
chr11:62647354|62647477 hsa-miR-608 1 0 0
chr11:62647354|62647477 hsa-miR-762 0 1 0
chr11:62647354|62647477 hsa-miR-663b 1 0 0
chr11:62647354|62647477 hsa-miR-1268a 1 0 0
chr11:62647354|62647477 hsa-miR-3196 1 0 0
chr11:62647354|62647477 hsa-miR-4281 1 0 0
chr11:62647354|62647477 hsa-miR-3943 0 1 0
chr11:62647354|62647477 hsa-miR-1268b 1 0 0
chr11:62647354|62647477 hsa-miR-4440 1 0 0
chr11:62647354|62647477 hsa-miR-4449 1 0 0
chr11:62647354|62647477 hsa-miR-4462 1 0 0
chr11:62647354|62647477 hsa-miR-4507 1 0 0
chr11:62647354|62647477 hsa-miR-4538 1 0 0
chr11:62647354|62647477 hsa-miR-4651 1 0 0
chr11:62647354|62647477 hsa-miR-4669 1 0 0
chr11:62647354|62647477 hsa-miR-4706 1 0 0
chr11:62647354|62647477 hsa-miR-5698 1 1 0
chr11:62647354|62647477 hsa-miR-6081 1 0 0
chr11:62647354|62647477 hsa-miR-6127 1 0 0
chr11:62647354|62647477 hsa-miR-7150 1 0 0
chr11:62647354|62647477 hsa-miR-8052 1 0 0
chr11:62647354|62647477 hsa-miR-12127 1 1 0
chr11:62647354|62647477 hsa-miR-12128 1 0 0
chr11:62647354|62647477 hsa-miR-4433b-3p 1 0 0
chr11:62647354|62647477 hsa-miR-6747-5p 1 0 0
chr11:62647354|62647477 hsa-miR-671-5p 1 0 0
chr11:62647354|62647477 hsa-miR-6825-5p 1 0 0
chr11:62647354|62647477 hsa-miR-3622a-5p 1 0 0
chr11:62647354|62647477 hsa-miR-4722-5p 1 0 0
chr11:62647354|62647477 hsa-miR-3677-5p 1 0 0
chr11:62647354|62647477 hsa-miR-503-5p 1 1 0
chr11:62647354|62647477 hsa-miR-6793-5p 1 0 0
chr11:62647354|62647477 hsa-miR-6732-5p 1 0 0
chr11:62647354|62647477 hsa-miR-6798-5p 1 1 0
chr11:62647354|62647477 hsa-miR-6782-5p 1 0 0
chr11:62647354|62647477 hsa-miR-5006-5p 1 1 0
chr11:62647354|62647477 hsa-miR-4640-5p 1 0 0
chr11:62647354|62647477 hsa-miR-5010-3p 1 0 0
chr11:62647354|62647477 hsa-miR-3648 1 0 0
chr11:62647354|62647477 hsa-miR-4787-5p 1 0 0
chr11:62647354|62647477 hsa-miR-103a-3p 1 0 0
chr11:62647354|62647477 hsa-miR-937-5p 1 0 0
chr11:62647354|62647477 hsa-miR-5010-5p 1 0 0
chr11:62647354|62647477 hsa-miR-4776-5p 1 0 0
chr11:62647354|62647477 hsa-miR-6501-3p 1 0 0
chr11:62647354|62647477 hsa-miR-16-5p 1 1 0
chr11:62647354|62647477 hsa-miR-10400-5p 1 0 0
chr11:62647354|62647477 hsa-miR-1207-5p 1 0 0
chr11:62647354|62647477 hsa-miR-4763-3p 1 0 0
chr11:62647354|62647477 hsa-miR-6769b-5p 1 0 0
chr11:62647354|62647477 hsa-miR-6865-5p 1 0 0
chr11:62647354|62647477 hsa-miR-6870-5p 1 1 0
chr11:62647354|62647477 hsa-miR-1343-5p 1 0 0
chr11:62647354|62647477 hsa-miR-6737-5p 1 0 0
chr11:62647354|62647477 hsa-miR-6743-5p 1 0 0
chr11:62647354|62647477 hsa-miR-6752-5p 1 0 0
chr11:62647354|62647477 hsa-miR-6754-5p 1 0 0
chr11:62647354|62647477 hsa-miR-6756-5p 1 0 0
chr11:62647354|62647477 hsa-miR-6769a-5p 1 0 0
chr11:62647354|62647477 hsa-miR-6803-5p 1 0 0
chr11:62647354|62647477 hsa-miR-7110-5p 1 0 0
chr11:62647354|62647477 hsa-miR-6751-5p 1 0 0
chr11:62647354|62647477 hsa-miR-6763-5p 1 0 0
chr11:62647354|62647477 hsa-miR-7111-5p 1 0 0
chr11:62647354|62647477 hsa-miR-4685-5p 1 0 0
chr11:62647354|62647477 hsa-miR-4745-5p 1 1 0
chr11:62647354|62647477 hsa-miR-6777-5p 1 0 0
chr11:62647354|62647477 hsa-miR-6794-5p 1 1 0
chr11:62647354|62647477 hsa-miR-6795-5p 1 0 0
chr11:62647354|62647477 hsa-miR-6848-5p 1 0 0
chr11:62647354|62647477 hsa-miR-6887-5p 1 0 0
chr11:62647354|62647477 hsa-miR-6889-5p 1 0 0
chr11:62647354|62647477 hsa-miR-939-5p 1 0 0
chr11:62647354|62647477 hsa-miR-4758-5p 1 0 0
chr11:62647354|62647477 hsa-miR-3940-5p 1 0 0
chr11:62647354|62647477 hsa-miR-7155-3p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr11:62647354|62647477
ORF Type ORF1
Protein Length 38
Nucleotide Length 114
Protein Sequence MCYCSVLLRGLLAALLGHWEASRHPDTTHSPWHLEASC
Nucleotide Sequence CTGTGCTACTGTTCCGTGCTGCTTCGGGGGCTGCTGGCCGCCCTCTTGGGCCATTGGGAAGCCTCTCGCCACCCTGACACGACCCACTCCCCCTGGCACCTGGAGGCATCCTGC
CircID chr11:62647354|62647477
ORF Type ORF2
Protein Length 39
Nucleotide Length 117
Protein Sequence MPPGARGSGSCQGGERLPNGPRGRPAAPEAARNSSTGLG
Nucleotide Sequence ATGCCTCCAGGTGCCAGGGGGAGTGGGTCGTGTCAGGGTGGCGAGAGGCTTCCCAATGGCCCAAGAGGGCGGCCAGCAGCCCCCGAAGCAGCACGGAACAGTAGCACAGGGCTGGGG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab