CircRNA Information

General Information
circRNA Basic Information
CircID chr11:62721820|62722134
Strand -
CircType exon
Host Gene ENSG00000234857.2;
Algorism CIRI2;
Sequence CCTCATTTGATTGAGCACAGTCTCAGCTCCCAGGACATTGTATCTTTTCTCAGGGTTTTCTTTTGCATATTTCAGTGCCCACTGGGTCTTTCCAGATCCGGGTAGTCCCACCATCAGAATCACCTGCAAAAAACAGAACCAGAAATATAATGAAAAATAAATGAGGGTCATGTTTATCAAAACCAATTTAAGAACATCCTCCCATTCCTGTTTGGTAACGCTCTGAGACCCTGGAGAGCATACGCACCCACCTCTGCAAAGCATACAACCTCAGTGTTCGTATACTGTTTGGCATACCTCACATTCCTCTATGGT
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr11:62721820|62722134 hsa-let-7b-5p 0 0 1
chr11:62721820|62722134 hsa-let-7b-3p 0 0 1
chr11:62721820|62722134 hsa-let-7c-5p 0 0 1
chr11:62721820|62722134 hsa-let-7c-3p 0 0 1
chr11:62721820|62722134 hsa-let-7d-5p 0 0 1
chr11:62721820|62722134 hsa-let-7d-3p 0 0 1
chr11:62721820|62722134 hsa-let-7e-5p 0 0 1
chr11:62721820|62722134 hsa-let-7e-3p 0 0 1
chr11:62721820|62722134 hsa-miR-98-5p 0 0 1
chr11:62721820|62722134 hsa-miR-98-3p 0 0 1
chr11:62721820|62722134 hsa-let-7g-5p 0 0 1
chr11:62721820|62722134 hsa-let-7g-3p 0 0 1
chr11:62721820|62722134 hsa-let-7i-5p 0 0 1
chr11:62721820|62722134 hsa-let-7i-3p 0 0 1
chr11:62721820|62722134 hsa-miR-141-5p 0 0 1
chr11:62721820|62722134 hsa-miR-141-3p 0 0 1
chr11:62721820|62722134 hsa-miR-144-5p 0 0 1
chr11:62721820|62722134 hsa-miR-144-3p 0 0 1
chr11:62721820|62722134 hsa-miR-206 0 0 1
chr11:62721820|62722134 hsa-miR-200a-5p 0 0 1
chr11:62721820|62722134 hsa-miR-200a-3p 0 0 1
chr11:62721820|62722134 hsa-miR-202-5p 0 0 1
chr11:62721820|62722134 hsa-miR-202-3p 0 0 1
chr11:62721820|62722134 hsa-miR-504-5p 0 0 1
chr11:62721820|62722134 hsa-miR-504-3p 0 0 1
chr11:62721820|62722134 hsa-miR-507 0 0 1
chr11:62721820|62722134 hsa-miR-539-5p 0 0 1
chr11:62721820|62722134 hsa-miR-539-3p 0 0 1
chr11:62721820|62722134 hsa-miR-557 1 0 1
chr11:62721820|62722134 hsa-miR-613 0 0 1
chr11:62721820|62722134 hsa-miR-657 0 0 1
chr11:62721820|62722134 hsa-miR-766-5p 0 0 1
chr11:62721820|62722134 hsa-miR-766-3p 0 0 1
chr11:62721820|62722134 hsa-miR-541-5p 0 0 1
chr11:62721820|62722134 hsa-miR-541-3p 0 0 1
chr11:62721820|62722134 hsa-miR-877-5p 0 0 1
chr11:62721820|62722134 hsa-miR-877-3p 0 0 1
chr11:62721820|62722134 hsa-miR-920 0 0 1
chr11:62721820|62722134 hsa-miR-297 0 0 1
chr11:62721820|62722134 hsa-miR-1182 1 1 1
chr11:62721820|62722134 hsa-miR-1294 0 0 1
chr11:62721820|62722134 hsa-miR-1299 0 0 1
chr11:62721820|62722134 hsa-miR-1265 0 0 1
chr11:62721820|62722134 hsa-miR-125a-3p 1 0 1
chr11:62721820|62722134 hsa-miR-129-5p 0 0 1
chr11:62721820|62722134 hsa-miR-941 0 0 1
chr11:62721820|62722134 hsa-miR-654-5p 0 0 1
chr11:62721820|62722134 hsa-miR-875-3p 0 0 1
chr11:62721820|62722134 hsa-miR-125a-5p 0 0 1
chr11:62721820|62722134 hsa-miR-450b-5p 0 0 1
chr11:62721820|62722134 hsa-miR-105 0 0 1
chr11:62721820|62722134 hsa-miR-125b 0 0 1
chr11:62721820|62722134 hsa-let-7a 0 0 1
chr11:62721820|62722134 hsa-let-7f 0 0 1
chr11:62721820|62722134 hsa-miR-1 0 0 1
chr11:62721820|62722134 hsa-miR-527 1 1 0
chr11:62721820|62722134 hsa-miR-567 0 1 0
chr11:62721820|62722134 hsa-miR-637 1 0 0
chr11:62721820|62722134 hsa-miR-3125 0 1 0
chr11:62721820|62722134 hsa-miR-4300 0 1 0
chr11:62721820|62722134 hsa-miR-4319 0 1 0
chr11:62721820|62722134 hsa-miR-4257 0 1 0
chr11:62721820|62722134 hsa-miR-4251 0 1 0
chr11:62721820|62722134 hsa-miR-3665 1 0 0
chr11:62721820|62722134 hsa-miR-4440 1 0 0
chr11:62721820|62722134 hsa-miR-4449 1 0 0
chr11:62721820|62722134 hsa-miR-4455 1 0 0
chr11:62721820|62722134 hsa-miR-3689c 1 0 0
chr11:62721820|62722134 hsa-miR-4648 0 1 0
chr11:62721820|62722134 hsa-miR-4651 1 0 0
chr11:62721820|62722134 hsa-miR-4739 1 0 0
chr11:62721820|62722134 hsa-miR-6086 1 0 0
chr11:62721820|62722134 hsa-miR-8075 1 0 0
chr11:62721820|62722134 hsa-miR-9986 0 1 0
chr11:62721820|62722134 hsa-miR-12128 1 0 0
chr11:62721820|62722134 hsa-miR-4433b-3p 1 1 0
chr11:62721820|62722134 hsa-miR-4433a-3p 1 0 0
chr11:62721820|62722134 hsa-miR-7851-3p 1 1 0
chr11:62721820|62722134 hsa-miR-3192-5p 0 1 0
chr11:62721820|62722134 hsa-miR-6757-5p 1 1 0
chr11:62721820|62722134 hsa-miR-6741-5p 1 0 0
chr11:62721820|62722134 hsa-miR-1288-3p 1 1 0
chr11:62721820|62722134 hsa-miR-6716-5p 1 1 0
chr11:62721820|62722134 hsa-miR-6827-5p 1 0 0
chr11:62721820|62722134 hsa-miR-6782-5p 1 0 0
chr11:62721820|62722134 hsa-miR-3667-5p 0 1 0
chr11:62721820|62722134 hsa-miR-1343-3p 0 1 0
chr11:62721820|62722134 hsa-miR-7109-5p 1 0 0
chr11:62721820|62722134 hsa-miR-3127-5p 1 1 0
chr11:62721820|62722134 hsa-miR-652-5p 1 1 0
chr11:62721820|62722134 hsa-miR-296-3p 1 0 0
chr11:62721820|62722134 hsa-miR-3160-3p 0 1 0
chr11:62721820|62722134 hsa-miR-598-5p 0 1 0
chr11:62721820|62722134 hsa-miR-338-5p 1 1 0
chr11:62721820|62722134 hsa-miR-19b-1-5p 1 0 0
chr11:62721820|62722134 hsa-miR-1233-5p 1 0 0
chr11:62721820|62722134 hsa-miR-3689b-3p 1 0 0
chr11:62721820|62722134 hsa-miR-4763-3p 1 0 0
chr11:62721820|62722134 hsa-miR-6769b-5p 1 1 0
chr11:62721820|62722134 hsa-miR-6726-5p 1 1 0
chr11:62721820|62722134 hsa-miR-6752-5p 1 0 0
chr11:62721820|62722134 hsa-miR-6803-5p 1 0 0
chr11:62721820|62722134 hsa-miR-6722-3p 1 0 0
chr11:62721820|62722134 hsa-miR-6751-5p 1 0 0
chr11:62721820|62722134 hsa-miR-6779-5p 1 0 0
chr11:62721820|62722134 hsa-miR-7111-5p 1 0 0
chr11:62721820|62722134 hsa-miR-5196-5p 1 0 0
chr11:62721820|62722134 hsa-miR-1909-3p 1 0 0
chr11:62721820|62722134 hsa-miR-3689a-3p 1 0 0
chr11:62721820|62722134 hsa-miR-4685-5p 1 0 0
chr11:62721820|62722134 hsa-miR-6848-5p 1 0 0
chr11:62721820|62722134 hsa-miR-6883-5p 1 0 0
chr11:62721820|62722134 hsa-miR-939-5p 1 1 0
chr11:62721820|62722134 hsa-miR-4758-5p 1 0 0
chr11:62721820|62722134 hsa-miR-1266-5p 1 1 0
chr11:62721820|62722134 hsa-miR-6511b-5p 1 0 0
chr11:62721820|62722134 hsa-miR-5008-3p 1 0 0
chr11:62721820|62722134 hsa-miR-10398-3p 1 0 0
chr11:62721820|62722134 hsa-miR-4646-5p 1 0 0
chr11:62721820|62722134 hsa-miR-6766-5p 0 1 0
chr11:62721820|62722134 hsa-miR-5591-5p 0 1 0
chr11:62721820|62722134 hsa-miR-4482-5p 0 1 0
chr11:62721820|62722134 hsa-miR-518a-5p 1 1 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr11:62721820|62722134
ORF Type ORF1
Protein Length 32
Nucleotide Length 99
Protein Sequence MIEHSLSSQDIVSFLRVFFCIFQCPLGLSRSG
Nucleotide Sequence TTGATTGAGCACAGTCTCAGCTCCCAGGACATTGTATCTTTTCTCAGGGTTTTCTTTTGCATATTTCAGTGCCCACTGGGTCTTTCCAGATCCGGGTAG
CircID chr11:62721820|62722134
ORF Type ORF2
Protein Length 36
Nucleotide Length 108
Protein Sequence MFGNALRPWRAYAPTSAKHTTSVFVYCLAYLTFLYG
Nucleotide Sequence CTGTTTGGTAACGCTCTGAGACCCTGGAGAGCATACGCACCCACCTCTGCAAAGCATACAACCTCAGTGTTCGTATACTGTTTGGCATACCTCACATTCCTCTATGGT
CircID chr11:62721820|62722134
ORF Type ORF3
Protein Length 49
Nucleotide Length 150
Protein Sequence MSTVSAPRTLYLFSGFSFAYFSAHWVFPDPGSPTIRITCKKQNQKYNEK
Nucleotide Sequence TTGAGCACAGTCTCAGCTCCCAGGACATTGTATCTTTTCTCAGGGTTTTCTTTTGCATATTTCAGTGCCCACTGGGTCTTTCCAGATCCGGGTAGTCCCACCATCAGAATCACCTGCAAAAAACAGAACCAGAAATATAATGAAAAATAA
CircID chr11:62721820|62722134
ORF Type ORF4
Protein Length 33
Nucleotide Length 102
Protein Sequence MHISVPTGSFQIRVVPPSESPAKNRTRNIMKNK
Nucleotide Sequence TTGCATATTTCAGTGCCCACTGGGTCTTTCCAGATCCGGGTAGTCCCACCATCAGAATCACCTGCAAAAAACAGAACCAGAAATATAATGAAAAATAAATGA
CircID chr11:62721820|62722134
ORF Type ORF5
Protein Length 28
Nucleotide Length 84
Protein Sequence MESIRTHLCKAYNLSVRILFGIPHIPLW
Nucleotide Sequence CTGGAGAGCATACGCACCCACCTCTGCAAAGCATACAACCTCAGTGTTCGTATACTGTTTGGCATACCTCACATTCCTCTATGG
CircID chr11:62721820|62722134
ORF Type ORF6
Protein Length 88
Nucleotide Length 264
Protein Sequence MLCRGGCVCSPGSQSVTKQEWEDVLKLVLINMTLIYFSLYFWFCFLQVILMVGLPGSGKTQWALKYAKENPEKRYNVLGAETVLNQMR
Nucleotide Sequence ATGCTTTGCAGAGGTGGGTGCGTATGCTCTCCAGGGTCTCAGAGCGTTACCAAACAGGAATGGGAGGATGTTCTTAAATTGGTTTTGATAAACATGACCCTCATTTATTTTTCATTATATTTCTGGTTCTGTTTTTTGCAGGTGATTCTGATGGTGGGACTACCCGGATCTGGAAAGACCCAGTGGGCACTGAAATATGCAAAAGAAAACCCTGAGAAAAGATACAATGTCCTGGGAGCTGAGACTGTGCTCAATCAAATGAGG
CircID chr11:62721820|62722134
ORF Type ORF7
Protein Length 35
Nucleotide Length 108
Protein Sequence MPNSIRTLRLYALQRWVRMLSRVSERYQTGMGGCS
Nucleotide Sequence ATGCCAAACAGTATACGAACACTGAGGTTGTATGCTTTGCAGAGGTGGGTGCGTATGCTCTCCAGGGTCTCAGAGCGTTACCAAACAGGAATGGGAGGATGTTCTTAA
CircID chr11:62721820|62722134
ORF Type ORF8
Protein Length 30
Nucleotide Length 93
Protein Sequence MVLFFAGDSDGGTTRIWKDPVGTEICKRKP
Nucleotide Sequence CTGGTTCTGTTTTTTGCAGGTGATTCTGATGGTGGGACTACCCGGATCTGGAAAGACCCAGTGGGCACTGAAATATGCAAAAGAAAACCCTGA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab