CircRNA Information

General Information
circRNA Basic Information
CircID chr11:64203844|64204016
Strand +
CircType exon
Host Gene ENSG00000168439.15;
Algorism CIRI2;
Sequence CTTTAAAGTCTTACTTGCTCTCAGAGCAAGCCCCAATTCAACCCCCTCTACAGAAGGCCCCGGCAGGGAGGGGTCCTGGCGAGGCCCGGGGCGCCGAGCTGCAGAGGCCTGCTCCACTTCGCAGAACTTGCCAGTCCTACTCTTGAGCCCACGACACAGCTTCCAGTCAAGAC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr11:64203844|64204016 hsa-miR-31-5p 0 0 1
chr11:64203844|64204016 hsa-miR-31-3p 0 0 1
chr11:64203844|64204016 hsa-miR-335-5p 0 0 1
chr11:64203844|64204016 hsa-miR-335-3p 0 0 1
chr11:64203844|64204016 hsa-miR-1301-5p 0 0 1
chr11:64203844|64204016 hsa-miR-1301-3p 0 0 1
chr11:64203844|64204016 hsa-miR-943 0 0 1
chr11:64203844|64204016 hsa-miR-1237-5p 0 0 1
chr11:64203844|64204016 hsa-miR-1237-3p 0 0 1
chr11:64203844|64204016 hsa-miR-1205 0 0 1
chr11:64203844|64204016 hsa-miR-1307-5p 0 0 1
chr11:64203844|64204016 hsa-miR-1307-3p 0 0 1
chr11:64203844|64204016 hsa-miR-671-5p 1 0 1
chr11:64203844|64204016 hsa-miR-1184 0 0 1
chr11:64203844|64204016 hsa-miR-219-2-3p 0 0 1
chr11:64203844|64204016 hsa-miR-499-5p 0 0 1
chr11:64203844|64204016 hsa-miR-637 1 0 0
chr11:64203844|64204016 hsa-miR-649 1 0 0
chr11:64203844|64204016 hsa-miR-762 1 0 0
chr11:64203844|64204016 hsa-miR-920 1 0 0
chr11:64203844|64204016 hsa-miR-1183 1 0 0
chr11:64203844|64204016 hsa-miR-1469 1 0 0
chr11:64203844|64204016 hsa-miR-2861 1 0 0
chr11:64203844|64204016 hsa-miR-3137 1 0 0
chr11:64203844|64204016 hsa-miR-4298 1 0 0
chr11:64203844|64204016 hsa-miR-4322 1 0 0
chr11:64203844|64204016 hsa-miR-4259 1 0 0
chr11:64203844|64204016 hsa-miR-3652 1 0 0
chr11:64203844|64204016 hsa-miR-4437 0 1 0
chr11:64203844|64204016 hsa-miR-4440 1 0 0
chr11:64203844|64204016 hsa-miR-4443 1 0 0
chr11:64203844|64204016 hsa-miR-4449 0 1 0
chr11:64203844|64204016 hsa-miR-3689c 1 0 0
chr11:64203844|64204016 hsa-miR-4498 1 0 0
chr11:64203844|64204016 hsa-miR-4515 1 0 0
chr11:64203844|64204016 hsa-miR-1587 1 0 0
chr11:64203844|64204016 hsa-miR-4674 0 1 0
chr11:64203844|64204016 hsa-miR-4688 1 0 0
chr11:64203844|64204016 hsa-miR-4741 1 0 0
chr11:64203844|64204016 hsa-miR-5090 1 0 0
chr11:64203844|64204016 hsa-miR-5691 0 1 0
chr11:64203844|64204016 hsa-miR-5787 1 0 0
chr11:64203844|64204016 hsa-miR-6081 1 0 0
chr11:64203844|64204016 hsa-miR-6745 1 0 0
chr11:64203844|64204016 hsa-miR-8089 1 0 0
chr11:64203844|64204016 hsa-miR-12115 1 1 0
chr11:64203844|64204016 hsa-miR-12117 0 1 0
chr11:64203844|64204016 hsa-miR-12119 0 1 0
chr11:64203844|64204016 hsa-miR-4433a-3p 1 1 0
chr11:64203844|64204016 hsa-miR-6894-5p 1 0 0
chr11:64203844|64204016 hsa-miR-6799-5p 1 0 0
chr11:64203844|64204016 hsa-miR-7114-5p 1 1 0
chr11:64203844|64204016 hsa-miR-4709-3p 1 0 0
chr11:64203844|64204016 hsa-miR-6727-5p 1 0 0
chr11:64203844|64204016 hsa-miR-4655-3p 1 0 0
chr11:64203844|64204016 hsa-miR-6805-5p 1 0 0
chr11:64203844|64204016 hsa-miR-6788-3p 1 0 0
chr11:64203844|64204016 hsa-miR-5088-5p 1 1 0
chr11:64203844|64204016 hsa-miR-3944-3p 1 0 0
chr11:64203844|64204016 hsa-miR-193b-5p 1 0 0
chr11:64203844|64204016 hsa-miR-6784-5p 1 1 0
chr11:64203844|64204016 hsa-miR-7113-3p 1 1 0
chr11:64203844|64204016 hsa-miR-3677-3p 1 1 0
chr11:64203844|64204016 hsa-miR-4446-3p 1 0 0
chr11:64203844|64204016 hsa-miR-7112-5p 1 0 0
chr11:64203844|64204016 hsa-miR-423-5p 1 0 0
chr11:64203844|64204016 hsa-miR-509-3p 1 0 0
chr11:64203844|64204016 hsa-miR-6770-3p 1 0 0
chr11:64203844|64204016 hsa-miR-3675-5p 0 1 0
chr11:64203844|64204016 hsa-miR-6846-3p 0 1 0
chr11:64203844|64204016 hsa-miR-6789-3p 0 1 0
chr11:64203844|64204016 hsa-miR-4650-5p 0 1 0
chr11:64203844|64204016 hsa-miR-3689b-3p 1 0 0
chr11:64203844|64204016 hsa-miR-6893-5p 1 0 0
chr11:64203844|64204016 hsa-miR-6775-5p 1 0 0
chr11:64203844|64204016 hsa-miR-5001-5p 1 0 0
chr11:64203844|64204016 hsa-miR-6726-5p 1 0 0
chr11:64203844|64204016 hsa-miR-6743-5p 1 0 0
chr11:64203844|64204016 hsa-miR-6752-5p 1 0 0
chr11:64203844|64204016 hsa-miR-7110-5p 1 0 0
chr11:64203844|64204016 hsa-miR-3620-5p 1 0 0
chr11:64203844|64204016 hsa-miR-1909-3p 1 0 0
chr11:64203844|64204016 hsa-miR-328-5p 1 0 0
chr11:64203844|64204016 hsa-miR-3689a-3p 1 0 0
chr11:64203844|64204016 hsa-miR-6846-5p 1 0 0
chr11:64203844|64204016 hsa-miR-939-5p 1 0 0
chr11:64203844|64204016 hsa-miR-4758-5p 1 0 0
chr11:64203844|64204016 hsa-miR-10396a-3p 1 1 0
chr11:64203844|64204016 hsa-miR-10396b-3p 1 1 0
chr11:64203844|64204016 hsa-miR-6791-5p 0 1 0
chr11:64203844|64204016 hsa-miR-4757-5p 0 1 0
chr11:64203844|64204016 hsa-miR-10401-3p 0 1 0
chr11:64203844|64204016 hsa-miR-6744-3p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr11:64203844|64204016
ORF Type ORF1
Protein Length 32
Nucleotide Length 96
Protein Sequence MARPGAPSCRGLLHFAELASPTLEPTTQLPVK
Nucleotide Sequence CTGGCGAGGCCCGGGGCGCCGAGCTGCAGAGGCCTGCTCCACTTCGCAGAACTTGCCAGTCCTACTCTTGAGCCCACGACACAGCTTCCAGTCAAG
CircID chr11:64203844|64204016
ORF Type ORF2
Protein Length 43
Nucleotide Length 132
Protein Sequence MLSEQAPIQPPLQKAPAGRGPGEARGAELQRPAPLRRTCQSYS
Nucleotide Sequence TTGCTCTCAGAGCAAGCCCCAATTCAACCCCCTCTACAGAAGGCCCCGGCAGGGAGGGGTCCTGGCGAGGCCCGGGGCGCCGAGCTGCAGAGGCCTGCTCCACTTCGCAGAACTTGCCAGTCCTACTCTTGA
CircID chr11:64203844|64204016
ORF Type ORF3
Protein Length 40
Nucleotide Length 123
Protein Sequence MTGSCVVGSRVGLASSAKWSRPLQLGAPGLARTPPCRGLL
Nucleotide Sequence TTGACTGGAAGCTGTGTCGTGGGCTCAAGAGTAGGACTGGCAAGTTCTGCGAAGTGGAGCAGGCCTCTGCAGCTCGGCGCCCCGGGCCTCGCCAGGACCCCTCCCTGCCGGGGCCTTCTGTAG
CircID chr11:64203844|64204016
ORF Type ORF4
Protein Length 28
Nucleotide Length 87
Protein Sequence MRSGAGLCSSAPRASPGPLPAGAFCRGG
Nucleotide Sequence CTGCGAAGTGGAGCAGGCCTCTGCAGCTCGGCGCCCCGGGCCTCGCCAGGACCCCTCCCTGCCGGGGCCTTCTGTAGAGGGGGTTGA
CircID chr11:64203844|64204016
ORF Type ORF5
Protein Length 53
Nucleotide Length 159
Protein Sequence MCRGLKSRTGKFCEVEQASAARRPGPRQDPSLPGPSVEGVELGLALRASKTLK
Nucleotide Sequence CTGTGTCGTGGGCTCAAGAGTAGGACTGGCAAGTTCTGCGAAGTGGAGCAGGCCTCTGCAGCTCGGCGCCCCGGGCCTCGCCAGGACCCCTCCCTGCCGGGGCCTTCTGTAGAGGGGGTTGAATTGGGGCTTGCTCTGAGAGCAAGTAAGACTTTAAAG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab