CircRNA Information

General Information
circRNA Basic Information
CircID chr11:64262456|64262697
Strand +
CircType exon
Host Gene ENSG00000149782.10;
Algorism CIRI2;
Sequence CTCCACGTAGATGCCCACCTTCCTGTCGGACAGGAACTGCCCTGAGATCACCTGGGGGTGGGCCAAGGAGGGTGAGGCGGATGCTGAGAGTCCTGCCCCCAGGACACCCCTGGCCTGAGCCGCCCGCAAGCCCCACCTTGACCCGCAAGGCATTGGCCACGATGCCATCCACGATGACCTCAGTGAAGGGGTCGAAGGACTTGTCCGGCCGCCGCATGAACTCCGGCTTGAGCAGGTACCCG
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr11:64262456|64262697 hsa-miR-328-5p 0 0 1
chr11:64262456|64262697 hsa-miR-328-3p 0 0 1
chr11:64262456|64262697 hsa-miR-551a 0 0 1
chr11:64262456|64262697 hsa-miR-551b-5p 0 0 1
chr11:64262456|64262697 hsa-miR-551b-3p 0 0 1
chr11:64262456|64262697 hsa-miR-637 1 0 1
chr11:64262456|64262697 hsa-miR-541-5p 0 0 1
chr11:64262456|64262697 hsa-miR-541-3p 0 0 1
chr11:64262456|64262697 hsa-miR-1204 0 0 1
chr11:64262456|64262697 hsa-miR-1206 0 0 1
chr11:64262456|64262697 hsa-miR-1286 0 0 1
chr11:64262456|64262697 hsa-miR-1266-5p 0 0 1
chr11:64262456|64262697 hsa-miR-1266-3p 0 0 1
chr11:64262456|64262697 hsa-miR-125a-3p 0 0 1
chr11:64262456|64262697 hsa-miR-486-3p 0 0 1
chr11:64262456|64262697 hsa-miR-654-5p 0 0 1
chr11:64262456|64262697 hsa-miR-361-3p 0 0 1
chr11:64262456|64262697 hsa-miR-532-5p 0 0 1
chr11:64262456|64262697 hsa-miR-767-3p 0 0 1
chr11:64262456|64262697 hsa-miR-24 0 0 1
chr11:64262456|64262697 hsa-miR-886-3p 0 0 1
chr11:64262456|64262697 hsa-miR-608 1 0 0
chr11:64262456|64262697 hsa-miR-3621 1 0 0
chr11:64262456|64262697 hsa-miR-3135b 1 0 0
chr11:64262456|64262697 hsa-miR-4488 1 0 0
chr11:64262456|64262697 hsa-miR-3960 1 0 0
chr11:64262456|64262697 hsa-miR-4734 1 0 0
chr11:64262456|64262697 hsa-miR-4433a-3p 1 0 0
chr11:64262456|64262697 hsa-miR-6089 1 0 0
chr11:64262456|64262697 hsa-miR-7160-5p 1 0 0
chr11:64262456|64262697 hsa-miR-3187-3p 1 0 0
chr11:64262456|64262697 hsa-miR-7108-5p 1 0 0
chr11:64262456|64262697 hsa-miR-4640-5p 1 0 0
chr11:64262456|64262697 hsa-miR-3677-3p 1 0 0
chr11:64262456|64262697 hsa-miR-6749-5p 1 0 0
chr11:64262456|64262697 hsa-miR-4787-5p 1 0 0
chr11:64262456|64262697 hsa-miR-6789-5p 1 0 0
chr11:64262456|64262697 hsa-miR-6886-5p 1 0 0
chr11:64262456|64262697 hsa-miR-4763-3p 1 0 0
chr11:64262456|64262697 hsa-miR-6752-5p 1 0 0
chr11:64262456|64262697 hsa-miR-6756-5p 1 0 0
chr11:64262456|64262697 hsa-miR-6815-5p 1 0 0
chr11:64262456|64262697 hsa-miR-6722-3p 1 0 0
chr11:64262456|64262697 hsa-miR-4649-5p 1 0 0
chr11:64262456|64262697 hsa-miR-4745-5p 1 0 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr11:64262456|64262697
ORF Type ORF1
Protein Length 35
Nucleotide Length 108
Protein Sequence MPTFLSDRNCPEITWGWAKEGEADAESPAPRTPLA
Nucleotide Sequence ATGCCCACCTTCCTGTCGGACAGGAACTGCCCTGAGATCACCTGGGGGTGGGCCAAGGAGGGTGAGGCGGATGCTGAGAGTCCTGCCCCCAGGACACCCCTGGCCTGA
CircID chr11:64262456|64262697
ORF Type ORF2
Protein Length 67
Nucleotide Length 201
Protein Sequence MRSPGGGPRRVRRMLRVLPPGHPWPEPPASPTLTRKALATMPSTMTSVKGSKDLSGRRMNSGLSRYP
Nucleotide Sequence CTGAGATCACCTGGGGGTGGGCCAAGGAGGGTGAGGCGGATGCTGAGAGTCCTGCCCCCAGGACACCCCTGGCCTGAGCCGCCCGCAAGCCCCACCTTGACCCGCAAGGCATTGGCCACGATGCCATCCACGATGACCTCAGTGAAGGGGTCGAAGGACTTGTCCGGCCGCCGCATGAACTCCGGCTTGAGCAGGTACCCG
CircID chr11:64262456|64262697
ORF Type ORF3
Protein Length 78
Nucleotide Length 234
Protein Sequence MLKPEFMRRPDKSFDPFTEVIVDGIVANALRVKVGLAGGSGQGCPGGRTLSIRLTLLGPPPGDLRAVPVRQEGGHLRG
Nucleotide Sequence CTGCTCAAGCCGGAGTTCATGCGGCGGCCGGACAAGTCCTTCGACCCCTTCACTGAGGTCATCGTGGATGGCATCGTGGCCAATGCCTTGCGGGTCAAGGTGGGGCTTGCGGGCGGCTCAGGCCAGGGGTGTCCTGGGGGCAGGACTCTCAGCATCCGCCTCACCCTCCTTGGCCCACCCCCAGGTGATCTCAGGGCAGTTCCTGTCCGACAGGAAGGTGGGCATCTACGTGGA
CircID chr11:64262456|64262697
ORF Type ORF4
Protein Length 61
Nucleotide Length 183
Protein Sequence MRSSWMASWPMPCGSRWGLRAAQARGVLGAGLSASASPSLAHPQVISGQFLSDRKVGIYVE
Nucleotide Sequence CTGAGGTCATCGTGGATGGCATCGTGGCCAATGCCTTGCGGGTCAAGGTGGGGCTTGCGGGCGGCTCAGGCCAGGGGTGTCCTGGGGGCAGGACTCTCAGCATCCGCCTCACCCTCCTTGGCCCACCCCCAGGTGATCTCAGGGCAGTTCCTGTCCGACAGGAAGGTGGGCATCTACGTGGAG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab