CircRNA Information

General Information
circRNA Basic Information
CircID chr11:64314344|64315059
Strand +
CircType exon
Host Gene ENSG00000173153.12;
Algorism CIRI2;
Sequence CTCCATCCACACGCTCTGCAGTACTGACATCTGGTCAGACAGCGACAGCGATGAGAAGCCTAGGGGGCAGCGGGGAGCGGGCCTGGCTGAGCAAGCGCACCAGAGCCGGGCCCGTTCAGGGCAGCCCCGGGTCACCTGGGCCCTTTACCTGGGATGCTCTTGGCCCAGCTGATGGTGACCACAATCTCTCGGTCAAAGAGGTCACAGAGGGTAGCCACGGCTGGGAGGTGCCCATCAGGGCCTGCGGGGTCAGGCATGGCATAGAGCTTCTCAGGCTCAACCACCAGCAGATGAGACACCAGTGCATTCACTGGGGCTGTCTTCCGGGGGCCTCCAGCGA
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr11:64314344|64315059 hsa-miR-217-5p 0 0 1
chr11:64314344|64315059 hsa-miR-217-3p 0 0 1
chr11:64314344|64315059 hsa-miR-223-5p 0 0 1
chr11:64314344|64315059 hsa-miR-223-3p 0 0 1
chr11:64314344|64315059 hsa-miR-335-5p 0 0 1
chr11:64314344|64315059 hsa-miR-335-3p 0 0 1
chr11:64314344|64315059 hsa-miR-563 0 0 1
chr11:64314344|64315059 hsa-miR-626 0 0 1
chr11:64314344|64315059 hsa-miR-645 0 0 1
chr11:64314344|64315059 hsa-miR-650 0 0 1
chr11:64314344|64315059 hsa-miR-675-5p 0 0 1
chr11:64314344|64315059 hsa-miR-675-3p 0 0 1
chr11:64314344|64315059 hsa-miR-874-5p 0 0 1
chr11:64314344|64315059 hsa-miR-874-3p 0 0 1
chr11:64314344|64315059 hsa-miR-887-5p 0 0 1
chr11:64314344|64315059 hsa-miR-887-3p 0 0 1
chr11:64314344|64315059 hsa-miR-760 0 0 1
chr11:64314344|64315059 hsa-miR-1178-5p 0 0 1
chr11:64314344|64315059 hsa-miR-1178-3p 0 0 1
chr11:64314344|64315059 hsa-miR-1291 0 0 1
chr11:64314344|64315059 hsa-miR-1253 0 0 1
chr11:64314344|64315059 hsa-miR-1257 0 0 1
chr11:64314344|64315059 hsa-miR-1278 0 0 1
chr11:64314344|64315059 hsa-miR-125a-3p 0 0 1
chr11:64314344|64315059 hsa-miR-324-5p 1 0 1
chr11:64314344|64315059 hsa-miR-146b-3p 0 0 1
chr11:64314344|64315059 hsa-miR-1207-3p 0 0 1
chr11:64314344|64315059 hsa-miR-876-3p 0 0 1
chr11:64314344|64315059 hsa-miR-324-3p 1 0 1
chr11:64314344|64315059 hsa-miR-509-3-5p 0 0 1
chr11:64314344|64315059 hsa-miR-509-5p 0 0 1
chr11:64314344|64315059 hsa-miR-323-5p 0 0 1
chr11:64314344|64315059 hsa-miR-7 0 0 1
chr11:64314344|64315059 hsa-miR-138 0 0 1
chr11:64314344|64315059 hsa-miR-1300 0 0 1
chr11:64314344|64315059 hsa-miR-1201 0 0 1
chr11:64314344|64315059 hsa-miR-1204 1 0 0
chr11:64314344|64315059 hsa-miR-1913 1 0 0
chr11:64314344|64315059 hsa-miR-3135b 1 0 0
chr11:64314344|64315059 hsa-miR-4731-5p 1 0 0
chr11:64314344|64315059 hsa-miR-6880-5p 1 0 0
chr11:64314344|64315059 hsa-miR-6796-3p 1 0 0
chr11:64314344|64315059 hsa-miR-4725-5p 1 0 0
chr11:64314344|64315059 hsa-miR-4640-5p 1 0 0
chr11:64314344|64315059 hsa-miR-1233-5p 1 0 0
chr11:64314344|64315059 hsa-miR-4726-5p 1 0 0
chr11:64314344|64315059 hsa-miR-10392-3p 1 0 0
chr11:64314344|64315059 hsa-miR-10394-5p 1 0 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr11:64314344|64315059
ORF Type ORF1
Protein Length 42
Nucleotide Length 129
Protein Sequence MGPLPGMLLAQLMVTTISRSKRSQRVATAGRCPSGPAGSGMA
Nucleotide Sequence CTGGGCCCTTTACCTGGGATGCTCTTGGCCCAGCTGATGGTGACCACAATCTCTCGGTCAAAGAGGTCACAGAGGGTAGCCACGGCTGGGAGGTGCCCATCAGGGCCTGCGGGGTCAGGCATGGCATAG
CircID chr11:64314344|64315059
ORF Type ORF2
Protein Length 29
Nucleotide Length 90
Protein Sequence MAEQAHQSRARSGQPRVTWALYLGCSWPS
Nucleotide Sequence CTGGCTGAGCAAGCGCACCAGAGCCGGGCCCGTTCAGGGCAGCCCCGGGTCACCTGGGCCCTTTACCTGGGATGCTCTTGGCCCAGCTGA
CircID chr11:64314344|64315059
ORF Type ORF3
Protein Length 40
Nucleotide Length 120
Protein Sequence MGGAHQGLRGQAWHRASQAQPPADETPVHSLGLSSGGLQR
Nucleotide Sequence CTGGGAGGTGCCCATCAGGGCCTGCGGGGTCAGGCATGGCATAGAGCTTCTCAGGCTCAACCACCAGCAGATGAGACACCAGTGCATTCACTGGGGCTGTCTTCCGGGGGCCTCCAGCGA
CircID chr11:64314344|64315059
ORF Type ORF4
Protein Length 105
Nucleotide Length 315
Protein Sequence MTSGQTATAMRSLGGSGERAWLSKRTRAGPVQGSPGSPGPFTWDALGPADGDHNLSVKEVTEGSHGWEVPIRACGVRHGIELLRLNHQQMRHQCIHWGCLPGASS
Nucleotide Sequence CTGACATCTGGTCAGACAGCGACAGCGATGAGAAGCCTAGGGGGCAGCGGGGAGCGGGCCTGGCTGAGCAAGCGCACCAGAGCCGGGCCCGTTCAGGGCAGCCCCGGGTCACCTGGGCCCTTTACCTGGGATGCTCTTGGCCCAGCTGATGGTGACCACAATCTCTCGGTCAAAGAGGTCACAGAGGGTAGCCACGGCTGGGAGGTGCCCATCAGGGCCTGCGGGGTCAGGCATGGCATAGAGCTTCTCAGGCTCAACCACCAGCAGATGAGACACCAGTGCATTCACTGGGGCTGTCTTCCGGGGGCCTCCAGC
CircID chr11:64314344|64315059
ORF Type ORF5
Protein Length 63
Nucleotide Length 192
Protein Sequence MHWCLICWWLSLRSSMPCLTPQALMGTSQPWLPSVTSLTERLWSPSAGPRASQVKGPGDPGLP
Nucleotide Sequence ATGCACTGGTGTCTCATCTGCTGGTGGTTGAGCCTGAGAAGCTCTATGCCATGCCTGACCCCGCAGGCCCTGATGGGCACCTCCCAGCCGTGGCTACCCTCTGTGACCTCTTTGACCGAGAGATTGTGGTCACCATCAGCTGGGCCAAGAGCATCCCAGGTAAAGGGCCCAGGTGACCCGGGGCTGCCCTGA
CircID chr11:64314344|64315059
ORF Type ORF6
Protein Length 56
Nucleotide Length 171
Protein Sequence MVSHLLVVEPEKLYAMPDPAGPDGHLPAVATLCDLFDREIVVTISWAKSIPGKGPR
Nucleotide Sequence CTGGTGTCTCATCTGCTGGTGGTTGAGCCTGAGAAGCTCTATGCCATGCCTGACCCCGCAGGCCCTGATGGGCACCTCCCAGCCGTGGCTACCCTCTGTGACCTCTTTGACCGAGAGATTGTGGTCACCATCAGCTGGGCCAAGAGCATCCCAGGTAAAGGGCCCAGGTGA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab