CircRNA Information

General Information
circRNA Basic Information
CircID chr11:64360231|64360565
Strand +
CircType exon
Host Gene ENSG00000162302.11;
Algorism CIRI2;
Sequence GATCTCACCCCCATACACGCGCACCTCAGCCTCCTTGAAGTACTGGCGCTGGTAGAGGTGGGTGAACATCTCCCCGCCGCTCACATAGTCTGGGAGGTGCAGTGGAAGTCAGGAAGCAGCCCCGTCAGGTGGCCTCGCCTGCCCCCAGCCACCCCAACCCCGTTGGGATGTGGTGTGCGCTCACCCAGGATGAGGTGCAGCTTGGCATCCGTCTGGAAAGCGTAGTGCAGCGTGACCAGGAAGGGCGCCTGGCGCACCAGCTCCAGCACCGAGCGCTCGGTGCGCGTGTGCTCTTGCGTCTTGGCGCGCTGCACCAGCGCCGCCTTGCGCAGCAC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr11:64360231|64360565 hsa-miR-335-5p 0 0 1
chr11:64360231|64360565 hsa-miR-335-3p 0 0 1
chr11:64360231|64360565 hsa-miR-608 0 1 1
chr11:64360231|64360565 hsa-miR-617 0 0 1
chr11:64360231|64360565 hsa-miR-634 0 0 1
chr11:64360231|64360565 hsa-miR-637 0 1 1
chr11:64360231|64360565 hsa-miR-675-5p 0 0 1
chr11:64360231|64360565 hsa-miR-675-3p 0 0 1
chr11:64360231|64360565 hsa-miR-1200 0 0 1
chr11:64360231|64360565 hsa-miR-1287-5p 0 0 1
chr11:64360231|64360565 hsa-miR-1287-3p 0 0 1
chr11:64360231|64360565 hsa-miR-1249-5p 0 0 1
chr11:64360231|64360565 hsa-miR-1249-3p 0 0 1
chr11:64360231|64360565 hsa-miR-1250-5p 0 0 1
chr11:64360231|64360565 hsa-miR-1250-3p 0 0 1
chr11:64360231|64360565 hsa-miR-1262 0 0 1
chr11:64360231|64360565 hsa-miR-770-5p 0 0 1
chr11:64360231|64360565 hsa-miR-423-3p 0 1 1
chr11:64360231|64360565 hsa-miR-486-3p 0 0 1
chr11:64360231|64360565 hsa-miR-485-5p 0 0 1
chr11:64360231|64360565 hsa-miR-525-5p 0 0 1
chr11:64360231|64360565 hsa-miR-339-3p 0 0 1
chr11:64360231|64360565 hsa-miR-1224-3p 0 0 1
chr11:64360231|64360565 hsa-miR-342-5p 0 0 1
chr11:64360231|64360565 hsa-miR-520a-5p 0 0 1
chr11:64360231|64360565 hsa-miR-516a-3p 0 0 1
chr11:64360231|64360565 hsa-miR-138 0 0 1
chr11:64360231|64360565 hsa-miR-663 0 0 1
chr11:64360231|64360565 hsa-miR-663a 1 1 0
chr11:64360231|64360565 hsa-miR-762 1 1 0
chr11:64360231|64360565 hsa-miR-665 1 0 0
chr11:64360231|64360565 hsa-miR-1248 0 1 0
chr11:64360231|64360565 hsa-miR-1260a 0 1 0
chr11:64360231|64360565 hsa-miR-548q 0 1 0
chr11:64360231|64360565 hsa-miR-3929 0 1 0
chr11:64360231|64360565 hsa-miR-3135b 0 1 0
chr11:64360231|64360565 hsa-miR-4467 0 1 0
chr11:64360231|64360565 hsa-miR-4478 0 1 0
chr11:64360231|64360565 hsa-miR-4488 1 0 0
chr11:64360231|64360565 hsa-miR-4498 0 1 0
chr11:64360231|64360565 hsa-miR-3960 0 1 0
chr11:64360231|64360565 hsa-miR-4651 1 1 0
chr11:64360231|64360565 hsa-miR-4688 0 1 0
chr11:64360231|64360565 hsa-miR-4706 0 1 0
chr11:64360231|64360565 hsa-miR-4741 1 0 0
chr11:64360231|64360565 hsa-miR-5572 0 1 0
chr11:64360231|64360565 hsa-miR-5787 1 1 0
chr11:64360231|64360565 hsa-miR-8072 0 1 0
chr11:64360231|64360565 hsa-miR-8089 1 0 0
chr11:64360231|64360565 hsa-miR-138-5p 0 1 0
chr11:64360231|64360565 hsa-miR-92a-1-5p 0 1 0
chr11:64360231|64360565 hsa-miR-4731-5p 0 1 0
chr11:64360231|64360565 hsa-miR-6747-3p 1 1 0
chr11:64360231|64360565 hsa-miR-6089 1 0 0
chr11:64360231|64360565 hsa-miR-4695-5p 0 1 0
chr11:64360231|64360565 hsa-miR-7160-5p 0 1 0
chr11:64360231|64360565 hsa-miR-6762-3p 1 1 0
chr11:64360231|64360565 hsa-miR-6727-5p 1 0 0
chr11:64360231|64360565 hsa-miR-8069 1 0 0
chr11:64360231|64360565 hsa-miR-185-3p 0 1 0
chr11:64360231|64360565 hsa-miR-3130-3p 0 1 0
chr11:64360231|64360565 hsa-miR-4793-3p 0 1 0
chr11:64360231|64360565 hsa-miR-6874-5p 0 1 0
chr11:64360231|64360565 hsa-miR-5006-5p 1 0 0
chr11:64360231|64360565 hsa-miR-1343-3p 0 1 0
chr11:64360231|64360565 hsa-miR-1226-5p 1 0 0
chr11:64360231|64360565 hsa-miR-3944-3p 1 0 0
chr11:64360231|64360565 hsa-miR-1228-5p 0 1 0
chr11:64360231|64360565 hsa-miR-4690-5p 1 1 0
chr11:64360231|64360565 hsa-miR-4783-5p 0 1 0
chr11:64360231|64360565 hsa-miR-7854-3p 1 0 0
chr11:64360231|64360565 hsa-miR-378a-5p 0 1 0
chr11:64360231|64360565 hsa-miR-7856-5p 0 1 0
chr11:64360231|64360565 hsa-miR-4708-3p 0 1 0
chr11:64360231|64360565 hsa-miR-3944-5p 0 1 0
chr11:64360231|64360565 hsa-miR-3180-5p 0 1 0
chr11:64360231|64360565 hsa-miR-6886-3p 0 1 0
chr11:64360231|64360565 hsa-miR-668-5p 1 0 0
chr11:64360231|64360565 hsa-miR-6509-3p 0 1 0
chr11:64360231|64360565 hsa-miR-4738-5p 0 1 0
chr11:64360231|64360565 hsa-miR-1207-5p 1 0 0
chr11:64360231|64360565 hsa-miR-4763-3p 1 0 0
chr11:64360231|64360565 hsa-miR-6812-5p 1 1 0
chr11:64360231|64360565 hsa-miR-6816-5p 1 1 0
chr11:64360231|64360565 hsa-miR-1343-5p 1 0 0
chr11:64360231|64360565 hsa-miR-5001-5p 1 0 0
chr11:64360231|64360565 hsa-miR-6737-5p 0 1 0
chr11:64360231|64360565 hsa-miR-6752-5p 0 1 0
chr11:64360231|64360565 hsa-miR-6754-5p 1 0 0
chr11:64360231|64360565 hsa-miR-6756-5p 1 0 0
chr11:64360231|64360565 hsa-miR-6803-5p 1 1 0
chr11:64360231|64360565 hsa-miR-6815-5p 0 1 0
chr11:64360231|64360565 hsa-miR-6819-5p 0 1 0
chr11:64360231|64360565 hsa-miR-6851-5p 1 0 0
chr11:64360231|64360565 hsa-miR-6751-5p 0 1 0
chr11:64360231|64360565 hsa-miR-6754-3p 0 1 0
chr11:64360231|64360565 hsa-miR-10526-3p 1 0 0
chr11:64360231|64360565 hsa-miR-328-5p 1 1 0
chr11:64360231|64360565 hsa-miR-4685-5p 1 0 0
chr11:64360231|64360565 hsa-miR-6729-5p 0 1 0
chr11:64360231|64360565 hsa-miR-6848-5p 1 0 0
chr11:64360231|64360565 hsa-miR-6889-5p 0 1 0
chr11:64360231|64360565 hsa-miR-10394-3p 1 0 0
chr11:64360231|64360565 hsa-miR-6736-5p 0 1 0
chr11:64360231|64360565 hsa-miR-324-3p 0 1 0
chr11:64360231|64360565 hsa-miR-6766-5p 0 1 0
chr11:64360231|64360565 hsa-miR-6862-3p 0 1 0
chr11:64360231|64360565 hsa-miR-6837-5p 1 0 0
chr11:64360231|64360565 hsa-miR-6884-5p 0 1 0
chr11:64360231|64360565 hsa-miR-373-3p 1 0 0
chr11:64360231|64360565 hsa-miR-6500-5p 1 0 0
chr11:64360231|64360565 hsa-miR-4315 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr11:64360231|64360565
ORF Type ORF1
Protein Length 60
Nucleotide Length 183
Protein Sequence MALVEVGEHLPAAHIVWEVQWKSGSSPVRWPRLPPATPTPLGCGVRSPRMRCSLASVWKA
Nucleotide Sequence CTGGCGCTGGTAGAGGTGGGTGAACATCTCCCCGCCGCTCACATAGTCTGGGAGGTGCAGTGGAAGTCAGGAAGCAGCCCCGTCAGGTGGCCTCGCCTGCCCCCAGCCACCCCAACCCCGTTGGGATGTGGTGTGCGCTCACCCAGGATGAGGTGCAGCTTGGCATCCGTCTGGAAAGCGTAG
CircID chr11:64360231|64360565
ORF Type ORF2
Protein Length 82
Nucleotide Length 246
Protein Sequence MGGAVEVRKQPRQVASPAPSHPNPVGMWCALTQDEVQLGIRLESVVQRDQEGRLAHQLQHRALGARVLLRLGALHQRRLAQH
Nucleotide Sequence CTGGGAGGTGCAGTGGAAGTCAGGAAGCAGCCCCGTCAGGTGGCCTCGCCTGCCCCCAGCCACCCCAACCCCGTTGGGATGTGGTGTGCGCTCACCCAGGATGAGGTGCAGCTTGGCATCCGTCTGGAAAGCGTAGTGCAGCGTGACCAGGAAGGGCGCCTGGCGCACCAGCTCCAGCACCGAGCGCTCGGTGCGCGTGTGCTCTTGCGTCTTGGCGCGCTGCACCAGCGCCGCCTTGCGCAGCAC
CircID chr11:64360231|64360565
ORF Type ORF3
Protein Length 83
Nucleotide Length 252
Protein Sequence MRKAALVQRAKTQEHTRTERSVLELVRQAPFLVTLHYAFQTDAKLHLILGERTPHPNGVGVAGGRRGHLTGLLPDFHCTSQTM
Nucleotide Sequence CTGCGCAAGGCGGCGCTGGTGCAGCGCGCCAAGACGCAAGAGCACACGCGCACCGAGCGCTCGGTGCTGGAGCTGGTGCGCCAGGCGCCCTTCCTGGTCACGCTGCACTACGCTTTCCAGACGGATGCCAAGCTGCACCTCATCCTGGGTGAGCGCACACCACATCCCAACGGGGTTGGGGTGGCTGGGGGCAGGCGAGGCCACCTGACGGGGCTGCTTCCTGACTTCCACTGCACCTCCCAGACTATGTGA
CircID chr11:64360231|64360565
ORF Type ORF4
Protein Length 27
Nucleotide Length 84
Protein Sequence MPSCTSSWVSAHHIPTGLGWLGAGEAT
Nucleotide Sequence ATGCCAAGCTGCACCTCATCCTGGGTGAGCGCACACCACATCCCAACGGGGTTGGGGTGGCTGGGGGCAGGCGAGGCCACCTGA
CircID chr11:64360231|64360565
ORF Type ORF5
Protein Length 28
Nucleotide Length 87
Protein Sequence MTSTAPPRLCERRGDVHPPLPAPVLQGG
Nucleotide Sequence CTGACTTCCACTGCACCTCCCAGACTATGTGAGCGGCGGGGAGATGTTCACCCACCTCTACCAGCGCCAGTACTTCAAGGAGGCTGA
CircID chr11:64360231|64360565
ORF Type ORF6
Protein Length 34
Nucleotide Length 102
Protein Sequence MHLPDYVSGGEMFTHLYQRQYFKEAEVRVYGGEI
Nucleotide Sequence CTGCACCTCCCAGACTATGTGAGCGGCGGGGAGATGTTCACCCACCTCTACCAGCGCCAGTACTTCAAGGAGGCTGAGGTGCGCGTGTATGGGGGTGAGATC
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab