CircRNA Information

General Information
circRNA Basic Information
CircID chr11:65130777|65130974
Strand -
CircType exon
Host Gene ENSG00000162298.15;
Algorism CIRI2;
Sequence GGCAGGTGGGGCAGGTCTGCTGCCGCTGGAACCAGGAGCGCAGGCAGCTGCGGGTCAAGGCCAGGCAGAGGTCAGCAGGTCCCTAGGGGCCTGCCTTCTGGGGCCTGTGCCCTGCTGTGCAGGCTCCCCAGGGCCCCTCCCACCTGGTATGGAAAATGTGGTTGCAGGGCAGTCTCTTGGCACCAGTCACCATCTCTT
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr11:65130777|65130974 hsa-miR-22-5p 0 0 1
chr11:65130777|65130974 hsa-miR-22-3p 0 0 1
chr11:65130777|65130974 hsa-miR-214-5p 0 0 1
chr11:65130777|65130974 hsa-miR-214-3p 0 0 1
chr11:65130777|65130974 hsa-miR-134-5p 0 0 1
chr11:65130777|65130974 hsa-miR-134-3p 0 0 1
chr11:65130777|65130974 hsa-miR-370-5p 0 0 1
chr11:65130777|65130974 hsa-miR-370-3p 0 0 1
chr11:65130777|65130974 hsa-miR-492 0 1 1
chr11:65130777|65130974 hsa-miR-587 0 0 1
chr11:65130777|65130974 hsa-miR-596 0 1 1
chr11:65130777|65130974 hsa-miR-661 0 0 1
chr11:65130777|65130974 hsa-miR-874-5p 0 0 1
chr11:65130777|65130974 hsa-miR-874-3p 0 0 1
chr11:65130777|65130974 hsa-miR-922 0 0 1
chr11:65130777|65130974 hsa-miR-939-5p 0 0 1
chr11:65130777|65130974 hsa-miR-939-3p 0 0 1
chr11:65130777|65130974 hsa-miR-940 0 1 1
chr11:65130777|65130974 hsa-miR-1291 0 0 1
chr11:65130777|65130974 hsa-miR-146b-3p 0 0 1
chr11:65130777|65130974 hsa-miR-423-5p 0 1 1
chr11:65130777|65130974 hsa-miR-1224-3p 0 0 1
chr11:65130777|65130974 hsa-miR-628-5p 0 0 1
chr11:65130777|65130974 hsa-miR-324-3p 0 0 1
chr11:65130777|65130974 hsa-miR-1254 0 0 1
chr11:65130777|65130974 hsa-miR-346 1 0 0
chr11:65130777|65130974 hsa-miR-623 1 0 0
chr11:65130777|65130974 hsa-miR-665 0 1 0
chr11:65130777|65130974 hsa-miR-1539 1 0 0
chr11:65130777|65130974 hsa-miR-1913 0 1 0
chr11:65130777|65130974 hsa-miR-548q 0 1 0
chr11:65130777|65130974 hsa-miR-1193 1 1 0
chr11:65130777|65130974 hsa-miR-4647 1 1 0
chr11:65130777|65130974 hsa-miR-4686 0 1 0
chr11:65130777|65130974 hsa-miR-6085 1 0 0
chr11:65130777|65130974 hsa-miR-8089 1 1 0
chr11:65130777|65130974 hsa-miR-9718 0 1 0
chr11:65130777|65130974 hsa-miR-9900 0 1 0
chr11:65130777|65130974 hsa-miR-218-1-3p 0 1 0
chr11:65130777|65130974 hsa-miR-6728-5p 1 0 0
chr11:65130777|65130974 hsa-miR-6757-5p 1 0 0
chr11:65130777|65130974 hsa-miR-1301-3p 0 1 0
chr11:65130777|65130974 hsa-miR-191-3p 0 1 0
chr11:65130777|65130974 hsa-miR-4728-3p 1 1 0
chr11:65130777|65130974 hsa-miR-1288-3p 1 0 0
chr11:65130777|65130974 hsa-miR-6882-3p 1 1 0
chr11:65130777|65130974 hsa-miR-6852-5p 0 1 0
chr11:65130777|65130974 hsa-miR-4763-5p 1 0 0
chr11:65130777|65130974 hsa-miR-1908-3p 1 0 0
chr11:65130777|65130974 hsa-miR-6894-3p 0 1 0
chr11:65130777|65130974 hsa-miR-6753-5p 1 0 0
chr11:65130777|65130974 hsa-miR-5001-3p 0 1 0
chr11:65130777|65130974 hsa-miR-149-3p 1 0 0
chr11:65130777|65130974 hsa-miR-7156-3p 1 0 0
chr11:65130777|65130974 hsa-miR-6811-3p 1 0 0
chr11:65130777|65130974 hsa-miR-4772-3p 0 1 0
chr11:65130777|65130974 hsa-miR-4758-3p 0 1 0
chr11:65130777|65130974 hsa-miR-3173-5p 0 1 0
chr11:65130777|65130974 hsa-miR-4771 0 1 0
chr11:65130777|65130974 hsa-miR-5002-3p 0 1 0
chr11:65130777|65130974 hsa-miR-1233-5p 1 1 0
chr11:65130777|65130974 hsa-miR-4763-3p 1 0 0
chr11:65130777|65130974 hsa-miR-6893-5p 0 1 0
chr11:65130777|65130974 hsa-miR-6775-5p 0 1 0
chr11:65130777|65130974 hsa-miR-1343-5p 1 0 0
chr11:65130777|65130974 hsa-miR-6756-5p 1 0 0
chr11:65130777|65130974 hsa-miR-6779-5p 1 1 0
chr11:65130777|65130974 hsa-miR-6808-5p 0 1 0
chr11:65130777|65130974 hsa-miR-4728-5p 1 0 0
chr11:65130777|65130974 hsa-miR-6836-5p 0 1 0
chr11:65130777|65130974 hsa-miR-10396b-5p 1 0 0
chr11:65130777|65130974 hsa-miR-328-5p 1 0 0
chr11:65130777|65130974 hsa-miR-6735-5p 0 1 0
chr11:65130777|65130974 hsa-miR-675-5p 1 0 0
chr11:65130777|65130974 hsa-miR-6885-5p 1 1 0
chr11:65130777|65130974 hsa-miR-6877-3p 1 0 0
chr11:65130777|65130974 hsa-miR-4700-5p 0 1 0
chr11:65130777|65130974 hsa-miR-4667-5p 0 1 0
chr11:65130777|65130974 hsa-miR-3184-5p 0 1 0
chr11:65130777|65130974 hsa-miR-6791-5p 0 1 0
chr11:65130777|65130974 hsa-miR-6762-5p 1 0 0
chr11:65130777|65130974 hsa-miR-6893-3p 0 1 0
chr11:65130777|65130974 hsa-miR-10397-5p 0 1 0
chr11:65130777|65130974 hsa-miR-3922-3p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr11:65130777|65130974
ORF Type ORF1
Protein Length 36
Nucleotide Length 108
Protein Sequence MPSGACALLCRLPRAPPTWYGKCGCRAVSWHQSPSL
Nucleotide Sequence CTGCCTTCTGGGGCCTGTGCCCTGCTGTGCAGGCTCCCCAGGGCCCCTCCCACCTGGTATGGAAAATGTGGTTGCAGGGCAGTCTCTTGGCACCAGTCACCATCTCTT
CircID chr11:65130777|65130974
ORF Type ORF2
Protein Length 60
Nucleotide Length 180
Protein Sequence MLPLEPGAQAAAGQGQAEVSRSLGACLLGPVPCCAGSPGPLPPGMENVVAGQSLGTSHHL
Nucleotide Sequence CTGCTGCCGCTGGAACCAGGAGCGCAGGCAGCTGCGGGTCAAGGCCAGGCAGAGGTCAGCAGGTCCCTAGGGGCCTGCCTTCTGGGGCCTGTGCCCTGCTGTGCAGGCTCCCCAGGGCCCCTCCCACCTGGTATGGAAAATGTGGTTGCAGGGCAGTCTCTTGGCACCAGTCACCATCTC
CircID chr11:65130777|65130974
ORF Type ORF3
Protein Length 31
Nucleotide Length 93
Protein Sequence MCPAVQAPQGPSHLVWKMWLQGSLLAPVTIS
Nucleotide Sequence CTGTGCCCTGCTGTGCAGGCTCCCCAGGGCCCCTCCCACCTGGTATGGAAAATGTGGTTGCAGGGCAGTCTCTTGGCACCAGTCACCATCTCT
CircID chr11:65130777|65130974
ORF Type ORF4
Protein Length 43
Nucleotide Length 132
Protein Sequence MVPRDCPATTFSIPGGRGPGEPAQQGTGPRRQAPRDLLTSAWP
Nucleotide Sequence CTGGTGCCAAGAGACTGCCCTGCAACCACATTTTCCATACCAGGTGGGAGGGGCCCTGGGGAGCCTGCACAGCAGGGCACAGGCCCCAGAAGGCAGGCCCCTAGGGACCTGCTGACCTCTGCCTGGCCTTGA
CircID chr11:65130777|65130974
ORF Type ORF5
Protein Length 31
Nucleotide Length 96
Protein Sequence MQPHFPYQVGGALGSLHSRAQAPEGRPLGTC
Nucleotide Sequence CTGCAACCACATTTTCCATACCAGGTGGGAGGGGCCCTGGGGAGCCTGCACAGCAGGGCACAGGCCCCAGAAGGCAGGCCCCTAGGGACCTGCTGA
CircID chr11:65130777|65130974
ORF Type ORF6
Protein Length 36
Nucleotide Length 111
Protein Sequence MVTGAKRLPCNHIFHTRWEGPWGACTAGHRPQKAGP
Nucleotide Sequence ATGGTGACTGGTGCCAAGAGACTGCCCTGCAACCACATTTTCCATACCAGGTGGGAGGGGCCCTGGGGAGCCTGCACAGCAGGGCACAGGCCCCAGAAGGCAGGCCCCTAG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab