CircRNA Information

General Information
circRNA Basic Information
CircID chr11:65436228|65436509
Strand -
CircType exon
Host Gene ENSG00000245532.5;
Algorism CIRI2;
Sequence CTCTAGAAGGAAATACCTGAGTTCCTCTGGCCTCAGCTCCTAGAGTGACTGGTGTGCTGTCCCTGTTACTCTTCTGTCAAGGTGACAACTGTGTGACCCATCATCTGTGTGTCAAAGCAAGGCCCTGCCTGGGCCTCTGCTCCTGTGCTGACCCCAAAGGCAAATGCTTTGCTAGTTTCCTTCCAGTTAATTTCACCTATGAATAGATGTGTGAAAACTGTTCAAAGCCATACCTGCACATGTTTGAACTTCAAACCCTGTGGGTGATTCAGTGGCATCTTT
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr11:65436228|65436509 hsa-miR-377-5p 0 0 1
chr11:65436228|65436509 hsa-miR-377-3p 0 0 1
chr11:65436228|65436509 hsa-miR-135b-5p 0 0 1
chr11:65436228|65436509 hsa-miR-135b-3p 0 0 1
chr11:65436228|65436509 hsa-miR-376b-5p 0 0 1
chr11:65436228|65436509 hsa-miR-376b-3p 0 0 1
chr11:65436228|65436509 hsa-miR-510-5p 0 0 1
chr11:65436228|65436509 hsa-miR-510-3p 0 0 1
chr11:65436228|65436509 hsa-miR-573 0 0 1
chr11:65436228|65436509 hsa-miR-657 0 0 1
chr11:65436228|65436509 hsa-miR-668-5p 0 0 1
chr11:65436228|65436509 hsa-miR-668-3p 0 0 1
chr11:65436228|65436509 hsa-miR-802 0 0 1
chr11:65436228|65436509 hsa-miR-708-5p 0 0 1
chr11:65436228|65436509 hsa-miR-708-3p 0 0 1
chr11:65436228|65436509 hsa-miR-940 0 1 1
chr11:65436228|65436509 hsa-miR-1237-5p 0 0 1
chr11:65436228|65436509 hsa-miR-1237-3p 0 0 1
chr11:65436228|65436509 hsa-miR-1248 0 0 1
chr11:65436228|65436509 hsa-miR-548p 0 0 1
chr11:65436228|65436509 hsa-miR-1252-5p 0 0 1
chr11:65436228|65436509 hsa-miR-1252-3p 0 0 1
chr11:65436228|65436509 hsa-miR-615-5p 0 0 1
chr11:65436228|65436509 hsa-miR-330-3p 0 0 1
chr11:65436228|65436509 hsa-miR-28-5p 0 0 1
chr11:65436228|65436509 hsa-miR-1207-5p 0 0 1
chr11:65436228|65436509 hsa-miR-518d-5p 0 0 1
chr11:65436228|65436509 hsa-miR-519b-5p 0 0 1
chr11:65436228|65436509 hsa-miR-519c-5p 0 0 1
chr11:65436228|65436509 hsa-miR-520c-5p 0 0 1
chr11:65436228|65436509 hsa-miR-582-3p 0 0 1
chr11:65436228|65436509 hsa-miR-220c 0 0 1
chr11:65436228|65436509 hsa-miR-664 0 0 1
chr11:65436228|65436509 hsa-miR-135a 0 0 1
chr11:65436228|65436509 hsa-miR-514 0 0 1
chr11:65436228|65436509 hsa-miR-376a 0 0 1
chr11:65436228|65436509 hsa-miR-526a 0 0 1
chr11:65436228|65436509 hsa-miR-194 0 0 1
chr11:65436228|65436509 hsa-miR-638 1 0 0
chr11:65436228|65436509 hsa-miR-1243 0 1 0
chr11:65436228|65436509 hsa-miR-1262 0 1 0
chr11:65436228|65436509 hsa-miR-3139 0 1 0
chr11:65436228|65436509 hsa-miR-4252 0 1 0
chr11:65436228|65436509 hsa-miR-4512 0 1 0
chr11:65436228|65436509 hsa-miR-4533 0 1 0
chr11:65436228|65436509 hsa-miR-4651 1 0 0
chr11:65436228|65436509 hsa-miR-4656 1 1 0
chr11:65436228|65436509 hsa-miR-4673 0 1 0
chr11:65436228|65436509 hsa-miR-4739 1 0 0
chr11:65436228|65436509 hsa-miR-5572 1 1 0
chr11:65436228|65436509 hsa-miR-6081 0 1 0
chr11:65436228|65436509 hsa-miR-8089 1 0 0
chr11:65436228|65436509 hsa-miR-211-3p 0 1 0
chr11:65436228|65436509 hsa-miR-6765-5p 1 0 0
chr11:65436228|65436509 hsa-miR-1236-5p 1 0 0
chr11:65436228|65436509 hsa-miR-6089 1 1 0
chr11:65436228|65436509 hsa-miR-7160-5p 0 1 0
chr11:65436228|65436509 hsa-miR-3180-3p 1 0 0
chr11:65436228|65436509 hsa-miR-6796-5p 1 0 0
chr11:65436228|65436509 hsa-miR-6881-5p 1 0 0
chr11:65436228|65436509 hsa-miR-2467-3p 1 1 0
chr11:65436228|65436509 hsa-miR-6874-5p 1 0 0
chr11:65436228|65436509 hsa-miR-5008-5p 1 0 0
chr11:65436228|65436509 hsa-miR-4640-5p 1 0 0
chr11:65436228|65436509 hsa-miR-3160-3p 0 1 0
chr11:65436228|65436509 hsa-miR-552-3p 0 1 0
chr11:65436228|65436509 hsa-miR-4763-3p 0 1 0
chr11:65436228|65436509 hsa-miR-6812-5p 1 0 0
chr11:65436228|65436509 hsa-miR-6726-5p 1 0 0
chr11:65436228|65436509 hsa-miR-6813-5p 1 1 0
chr11:65436228|65436509 hsa-miR-6819-5p 1 0 0
chr11:65436228|65436509 hsa-miR-6797-5p 1 0 0
chr11:65436228|65436509 hsa-miR-6836-5p 0 1 0
chr11:65436228|65436509 hsa-miR-1909-3p 1 0 0
chr11:65436228|65436509 hsa-miR-4726-5p 1 1 0
chr11:65436228|65436509 hsa-miR-6735-5p 1 0 0
chr11:65436228|65436509 hsa-miR-6845-5p 1 0 0
chr11:65436228|65436509 hsa-miR-939-5p 1 1 0
chr11:65436228|65436509 hsa-miR-6511a-5p 1 0 0
chr11:65436228|65436509 hsa-miR-6855-5p 1 1 0
chr11:65436228|65436509 hsa-miR-6876-5p 1 1 0
chr11:65436228|65436509 hsa-miR-6859-5p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py


    by mir_boxplot.py


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    by mir_boxplot.py


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circRNA Open Reading Frame (ORF)
CircID chr11:65436228|65436509
ORF Type ORF1
Protein Length 39
Nucleotide Length 120
Protein Sequence MTPKANALLVSFQLISPMNRCVKTVQSHTCTCLNFKPCG
Nucleotide Sequence CTGACCCCAAAGGCAAATGCTTTGCTAGTTTCCTTCCAGTTAATTTCACCTATGAATAGATGTGTGAAAACTGTTCAAAGCCATACCTGCACATGTTTGAACTTCAAACCCTGTGGGTGA

CircID chr11:65436228|65436509
ORF Type ORF2
Protein Length 59
Nucleotide Length 180
Protein Sequence MASAPRVTGVLSLLLFCQGDNCVTHHLCVKARPCLGLCSCADPKGKCFASFLPVNFTYE
Nucleotide Sequence CTGGCCTCAGCTCCTAGAGTGACTGGTGTGCTGTCCCTGTTACTCTTCTGTCAAGGTGACAACTGTGTGACCCATCATCTGTGTGTCAAAGCAAGGCCCTGCCTGGGCCTCTGCTCCTGTGCTGACCCCAAAGGCAAATGCTTTGCTAGTTTCCTTCCAGTTAATTTCACCTATGAATAG

CircID chr11:65436228|65436509
ORF Type ORF3
Protein Length 25
Nucleotide Length 75
Protein Sequence MCENCSKPYLHMFELQTLWVIQWHL
Nucleotide Sequence ATGTGTGAAAACTGTTCAAAGCCATACCTGCACATGTTTGAACTTCAAACCCTGTGGGTGATTCAGTGGCATCTT

RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites