CircRNA Information

General Information
circRNA Basic Information
CircID chr11:65500559|65500697
Strand +
CircType exon
Host Gene ENSG00000251562.6;
Algorism CIRI2;
Sequence GCCTGCTCGCCTCCTCCGTGTGGTTGCCAAGCCAAGCCGCCTGCTACCTTCATCACCAAATTGCACTCGCTCCTTCCTGGAATCCTTTTTCCTAGCTTCACCACCAAATCGTTAGCGCTCCTTCCTTCTTCCTAGCTTC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr11:65500559|65500697 hsa-miR-182-5p 0 0 1
chr11:65500559|65500697 hsa-miR-182-3p 0 0 1
chr11:65500559|65500697 hsa-miR-130a-5p 0 0 1
chr11:65500559|65500697 hsa-miR-130a-3p 0 0 1
chr11:65500559|65500697 hsa-miR-301a-5p 0 0 1
chr11:65500559|65500697 hsa-miR-301a-3p 0 0 1
chr11:65500559|65500697 hsa-miR-130b-5p 0 0 1
chr11:65500559|65500697 hsa-miR-130b-3p 0 0 1
chr11:65500559|65500697 hsa-miR-493-5p 0 0 1
chr11:65500559|65500697 hsa-miR-493-3p 0 0 1
chr11:65500559|65500697 hsa-miR-454-5p 0 0 1
chr11:65500559|65500697 hsa-miR-454-3p 0 0 1
chr11:65500559|65500697 hsa-miR-765 1 0 1
chr11:65500559|65500697 hsa-miR-665 0 0 1
chr11:65500559|65500697 hsa-miR-301b-5p 0 0 1
chr11:65500559|65500697 hsa-miR-301b-3p 0 0 1
chr11:65500559|65500697 hsa-miR-1252-5p 0 0 1
chr11:65500559|65500697 hsa-miR-1252-3p 0 0 1
chr11:65500559|65500697 hsa-miR-127-5p 0 0 1
chr11:65500559|65500697 hsa-miR-876-3p 0 0 1
chr11:65500559|65500697 hsa-miR-323-5p 0 0 1
chr11:65500559|65500697 hsa-miR-184 1 0 0
chr11:65500559|65500697 hsa-miR-638 1 0 0
chr11:65500559|65500697 hsa-miR-650 1 0 0
chr11:65500559|65500697 hsa-miR-3154 1 0 0
chr11:65500559|65500697 hsa-miR-3185 1 1 0
chr11:65500559|65500697 hsa-miR-320e 1 0 0
chr11:65500559|65500697 hsa-miR-3665 1 0 0
chr11:65500559|65500697 hsa-miR-3937 1 1 0
chr11:65500559|65500697 hsa-miR-4462 1 0 0
chr11:65500559|65500697 hsa-miR-4466 1 0 0
chr11:65500559|65500697 hsa-miR-4476 1 1 0
chr11:65500559|65500697 hsa-miR-4489 1 0 0
chr11:65500559|65500697 hsa-miR-4510 1 0 0
chr11:65500559|65500697 hsa-miR-4516 1 0 0
chr11:65500559|65500697 hsa-miR-4533 1 1 0
chr11:65500559|65500697 hsa-miR-4673 1 0 0
chr11:65500559|65500697 hsa-miR-4739 1 1 0
chr11:65500559|65500697 hsa-miR-4767 1 0 0
chr11:65500559|65500697 hsa-miR-5191 1 0 0
chr11:65500559|65500697 hsa-miR-5192 1 0 0
chr11:65500559|65500697 hsa-miR-5698 1 0 0
chr11:65500559|65500697 hsa-miR-6088 1 0 0
chr11:65500559|65500697 hsa-miR-6090 1 0 0
chr11:65500559|65500697 hsa-miR-6124 1 0 0
chr11:65500559|65500697 hsa-miR-6127 1 0 0
chr11:65500559|65500697 hsa-miR-6129 1 0 0
chr11:65500559|65500697 hsa-miR-6133 1 0 0
chr11:65500559|65500697 hsa-miR-12115 1 0 0
chr11:65500559|65500697 hsa-miR-12118 1 0 0
chr11:65500559|65500697 hsa-miR-12120 1 0 0
chr11:65500559|65500697 hsa-miR-4433b-3p 1 0 0
chr11:65500559|65500697 hsa-miR-504-3p 1 0 0
chr11:65500559|65500697 hsa-miR-4433a-3p 1 0 0
chr11:65500559|65500697 hsa-miR-7106-5p 1 0 0
chr11:65500559|65500697 hsa-miR-6894-5p 1 0 0
chr11:65500559|65500697 hsa-miR-6799-5p 1 0 0
chr11:65500559|65500697 hsa-miR-766-5p 1 0 0
chr11:65500559|65500697 hsa-miR-4695-5p 1 1 0
chr11:65500559|65500697 hsa-miR-6746-5p 1 0 0
chr11:65500559|65500697 hsa-miR-4722-5p 1 0 0
chr11:65500559|65500697 hsa-miR-6732-5p 1 0 0
chr11:65500559|65500697 hsa-miR-6805-5p 1 0 0
chr11:65500559|65500697 hsa-miR-6760-5p 1 1 0
chr11:65500559|65500697 hsa-miR-1226-5p 1 0 0
chr11:65500559|65500697 hsa-miR-204-3p 1 0 0
chr11:65500559|65500697 hsa-let-7d-5p 1 1 0
chr11:65500559|65500697 hsa-miR-4690-5p 1 1 0
chr11:65500559|65500697 hsa-let-7b-5p 1 1 0
chr11:65500559|65500697 hsa-miR-149-3p 1 0 0
chr11:65500559|65500697 hsa-miR-6830-5p 1 0 0
chr11:65500559|65500697 hsa-miR-6789-5p 1 0 0
chr11:65500559|65500697 hsa-miR-3162-5p 1 0 0
chr11:65500559|65500697 hsa-miR-7156-3p 1 0 0
chr11:65500559|65500697 hsa-let-7c-5p 1 1 0
chr11:65500559|65500697 hsa-let-7a-5p 1 0 0
chr11:65500559|65500697 hsa-miR-3186-3p 1 0 0
chr11:65500559|65500697 hsa-miR-10400-5p 1 0 0
chr11:65500559|65500697 hsa-miR-1233-5p 1 0 0
chr11:65500559|65500697 hsa-miR-4763-3p 1 0 0
chr11:65500559|65500697 hsa-miR-6778-5p 1 0 0
chr11:65500559|65500697 hsa-miR-6865-5p 1 0 0
chr11:65500559|65500697 hsa-miR-6754-5p 1 0 0
chr11:65500559|65500697 hsa-miR-6803-5p 1 0 0
chr11:65500559|65500697 hsa-miR-6815-5p 1 0 0
chr11:65500559|65500697 hsa-miR-7107-5p 1 0 0
chr11:65500559|65500697 hsa-miR-11181-3p 1 1 0
chr11:65500559|65500697 hsa-miR-1249-5p 1 0 0
chr11:65500559|65500697 hsa-miR-6751-5p 1 0 0
chr11:65500559|65500697 hsa-miR-6788-5p 1 0 0
chr11:65500559|65500697 hsa-miR-6797-5p 1 0 0
chr11:65500559|65500697 hsa-miR-6879-5p 1 0 0
chr11:65500559|65500697 hsa-miR-5196-5p 1 0 0
chr11:65500559|65500697 hsa-miR-1909-3p 1 0 0
chr11:65500559|65500697 hsa-miR-4632-5p 1 0 0
chr11:65500559|65500697 hsa-miR-4649-5p 1 0 0
chr11:65500559|65500697 hsa-miR-4701-3p 1 0 0
chr11:65500559|65500697 hsa-miR-6729-5p 1 0 0
chr11:65500559|65500697 hsa-miR-6858-5p 1 0 0
chr11:65500559|65500697 hsa-miR-6831-5p 1 0 0
chr11:65500559|65500697 hsa-miR-939-5p 1 0 0
chr11:65500559|65500697 hsa-miR-6511a-5p 1 0 0
chr11:65500559|65500697 hsa-miR-6856-5p 1 0 0
chr11:65500559|65500697 hsa-miR-3173-3p 1 0 0
chr11:65500559|65500697 hsa-miR-4646-5p 1 1 0
chr11:65500559|65500697 hsa-miR-4747-5p 1 0 0
chr11:65500559|65500697 hsa-miR-6876-5p 1 1 0
chr11:65500559|65500697 hsa-miR-6891-5p 1 0 0
chr11:65500559|65500697 hsa-miR-6785-5p 1 0 0
chr11:65500559|65500697 hsa-miR-3619-5p 1 0 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr11:65500559|65500697
ORF Type ORF1
Protein Length 30
Nucleotide Length 93
Protein Sequence LLASSVWLPSQAACYLHHQIALAPSWNPFS
Nucleotide Sequence CTGCTCGCCTCCTCCGTGTGGTTGCCAAGCCAAGCCGCCTGCTACCTTCATCACCAAATTGCACTCGCTCCTTCCTGGAATCCTTTTTCCTAG
CircID chr11:65500559|65500697
ORF Type ORF2
Protein Length 35
Nucleotide Length 105
Protein Sequence MVVKLGKRIPGRSECNLVMKVAGGLAWQPHGGGEQ
Nucleotide Sequence TTGGTGGTGAAGCTAGGAAAAAGGATTCCAGGAAGGAGCGAGTGCAATTTGGTGATGAAGGTAGCAGGCGGCTTGGCTTGGCAACCACACGGAGGAGGCGAGCAG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab