CircRNA Information

General Information
circRNA Basic Information
CircID chr11:65500688|65500862
Strand +
CircType exon
Host Gene ENSG00000251562.6;
Algorism CIRI2;
Sequence CTCAGTACGAAACTCCCCCATTATATTAGAAAATAAATAAAAGGTTACCATAAGTAAGTTCCAGAAAAACAACATATTGCCGACCTCACGGATTTTTACCAACCACTCGCTTTCCCTGTGGCCTTGGCACACTGGCATGCTGGTCTAGGATCCTCTACGCACAACGCCTGCTCGC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr11:65500688|65500862 hsa-miR-210-5p 0 0 1
chr11:65500688|65500862 hsa-miR-210-3p 0 0 1
chr11:65500688|65500862 hsa-miR-584-5p 0 0 1
chr11:65500688|65500862 hsa-miR-584-3p 0 0 1
chr11:65500688|65500862 hsa-miR-625-5p 0 0 1
chr11:65500688|65500862 hsa-miR-625-3p 0 0 1
chr11:65500688|65500862 hsa-miR-634 0 0 1
chr11:65500688|65500862 hsa-miR-648 0 1 1
chr11:65500688|65500862 hsa-miR-147b-5p 0 0 1
chr11:65500688|65500862 hsa-miR-147b-3p 0 0 1
chr11:65500688|65500862 hsa-miR-877-5p 0 0 1
chr11:65500688|65500862 hsa-miR-877-3p 0 0 1
chr11:65500688|65500862 hsa-miR-1227-5p 0 0 1
chr11:65500688|65500862 hsa-miR-1227-3p 0 0 1
chr11:65500688|65500862 hsa-miR-1294 1 1 1
chr11:65500688|65500862 hsa-miR-1299 0 1 1
chr11:65500688|65500862 hsa-miR-1275 0 0 1
chr11:65500688|65500862 hsa-miR-140-5p 0 0 1
chr11:65500688|65500862 hsa-miR-199a-5p 0 1 1
chr11:65500688|65500862 hsa-miR-875-3p 0 0 1
chr11:65500688|65500862 hsa-miR-576-5p 0 0 1
chr11:65500688|65500862 hsa-miR-199b-5p 0 0 1
chr11:65500688|65500862 hsa-miR-338-3p 0 1 1
chr11:65500688|65500862 hsa-miR-548c-3p 0 0 1
chr11:65500688|65500862 hsa-miR-220c 0 0 1
chr11:65500688|65500862 hsa-miR-516b 0 0 1
chr11:65500688|65500862 hsa-miR-325 1 0 0
chr11:65500688|65500862 hsa-miR-1268a 1 0 0
chr11:65500688|65500862 hsa-miR-3153 1 1 0
chr11:65500688|65500862 hsa-miR-1268b 1 0 0
chr11:65500688|65500862 hsa-miR-4706 1 0 0
chr11:65500688|65500862 hsa-miR-4767 1 0 0
chr11:65500688|65500862 hsa-miR-4785 1 0 0
chr11:65500688|65500862 hsa-miR-5698 0 1 0
chr11:65500688|65500862 hsa-miR-5704 0 1 0
chr11:65500688|65500862 hsa-miR-6125 1 0 0
chr11:65500688|65500862 hsa-miR-7704 1 0 0
chr11:65500688|65500862 hsa-miR-8085 1 0 0
chr11:65500688|65500862 hsa-miR-9986 0 1 0
chr11:65500688|65500862 hsa-miR-138-5p 1 0 0
chr11:65500688|65500862 hsa-miR-6089 1 0 0
chr11:65500688|65500862 hsa-miR-6867-5p 1 0 0
chr11:65500688|65500862 hsa-miR-4753-5p 0 1 0
chr11:65500688|65500862 hsa-miR-8069 1 0 0
chr11:65500688|65500862 hsa-miR-7845-5p 1 0 0
chr11:65500688|65500862 hsa-miR-6768-5p 0 1 0
chr11:65500688|65500862 hsa-miR-6798-5p 1 0 0
chr11:65500688|65500862 hsa-miR-6770-5p 1 0 0
chr11:65500688|65500862 hsa-miR-5006-5p 1 0 0
chr11:65500688|65500862 hsa-miR-4690-5p 1 0 0
chr11:65500688|65500862 hsa-miR-6824-5p 0 1 0
chr11:65500688|65500862 hsa-miR-7112-5p 1 0 0
chr11:65500688|65500862 hsa-miR-3922-5p 0 1 0
chr11:65500688|65500862 hsa-miR-4661-3p 0 1 0
chr11:65500688|65500862 hsa-miR-2277-5p 1 0 0
chr11:65500688|65500862 hsa-miR-4717-5p 0 1 0
chr11:65500688|65500862 hsa-miR-4763-3p 1 0 0
chr11:65500688|65500862 hsa-miR-6722-3p 1 0 0
chr11:65500688|65500862 hsa-miR-6879-5p 1 0 0
chr11:65500688|65500862 hsa-miR-5196-5p 1 0 0
chr11:65500688|65500862 hsa-miR-4725-3p 1 0 0
chr11:65500688|65500862 hsa-miR-4726-5p 1 0 0
chr11:65500688|65500862 hsa-miR-4745-5p 1 0 0
chr11:65500688|65500862 hsa-miR-6731-5p 1 0 0
chr11:65500688|65500862 hsa-miR-6837-5p 1 1 0
chr11:65500688|65500862 hsa-miR-3619-5p 1 0 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr11:65500688|65500862
ORF Type ORF1
Protein Length 46
Nucleotide Length 138
Protein Sequence MPVCQGHRESEWLVKIREVGNMLFFWNLLMVTFYLFSNIMGEFRTE
Nucleotide Sequence ATGCCAGTGTGCCAAGGCCACAGGGAAAGCGAGTGGTTGGTAAAAATCCGTGAGGTCGGCAATATGTTGTTTTTCTGGAACTTACTTATGGTAACCTTTTATTTATTTTCTAATATAATGGGGGAGTTTCGTACTGAG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab