CircRNA Information

General Information
circRNA Basic Information
CircID chr11:65535266|65535370
Strand -
CircType exon
Host Gene ENSG00000142186.15;
Algorism CIRI2;
Sequence CTCAATGTGGAGCTGATGAAGCACTTTGCACGGCTACAGGCCAAGGATGAACAGGGCCCCATCCGCTGCAACACCACAGTCTGCCTGGGCAAAATCGGCTCCTAC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr11:65535266|65535370 hsa-miR-17-5p 0 0 1
chr11:65535266|65535370 hsa-miR-17-3p 0 0 1
chr11:65535266|65535370 hsa-miR-19a-5p 0 0 1
chr11:65535266|65535370 hsa-miR-19a-3p 0 0 1
chr11:65535266|65535370 hsa-miR-20a-5p 0 0 1
chr11:65535266|65535370 hsa-miR-20a-3p 0 0 1
chr11:65535266|65535370 hsa-miR-93-5p 0 0 1
chr11:65535266|65535370 hsa-miR-93-3p 0 0 1
chr11:65535266|65535370 hsa-miR-106a-5p 0 0 1
chr11:65535266|65535370 hsa-miR-106a-3p 0 0 1
chr11:65535266|65535370 hsa-miR-106b-5p 0 0 1
chr11:65535266|65535370 hsa-miR-106b-3p 0 0 1
chr11:65535266|65535370 hsa-miR-302a-5p 0 0 1
chr11:65535266|65535370 hsa-miR-302a-3p 0 0 1
chr11:65535266|65535370 hsa-miR-302b-5p 0 0 1
chr11:65535266|65535370 hsa-miR-302b-3p 0 0 1
chr11:65535266|65535370 hsa-miR-302c-5p 0 0 1
chr11:65535266|65535370 hsa-miR-302c-3p 0 0 1
chr11:65535266|65535370 hsa-miR-302d-5p 0 0 1
chr11:65535266|65535370 hsa-miR-302d-3p 0 0 1
chr11:65535266|65535370 hsa-miR-372-5p 0 0 1
chr11:65535266|65535370 hsa-miR-372-3p 0 0 1
chr11:65535266|65535370 hsa-miR-373-5p 0 0 1
chr11:65535266|65535370 hsa-miR-373-3p 0 0 1
chr11:65535266|65535370 hsa-miR-20b-5p 0 0 1
chr11:65535266|65535370 hsa-miR-20b-3p 0 0 1
chr11:65535266|65535370 hsa-miR-520e-5p 0 0 1
chr11:65535266|65535370 hsa-miR-520e-3p 0 0 1
chr11:65535266|65535370 hsa-miR-520f-5p 0 0 1
chr11:65535266|65535370 hsa-miR-520f-3p 0 0 1
chr11:65535266|65535370 hsa-miR-520b-5p 0 0 1
chr11:65535266|65535370 hsa-miR-520b-3p 0 0 1
chr11:65535266|65535370 hsa-miR-519d-5p 0 0 1
chr11:65535266|65535370 hsa-miR-519d-3p 0 0 1
chr11:65535266|65535370 hsa-miR-520g-5p 0 0 1
chr11:65535266|65535370 hsa-miR-520g-3p 0 0 1
chr11:65535266|65535370 hsa-miR-520h 0 1 1
chr11:65535266|65535370 hsa-miR-527 0 0 1
chr11:65535266|65535370 hsa-miR-1301-5p 0 0 1
chr11:65535266|65535370 hsa-miR-1301-3p 0 0 1
chr11:65535266|65535370 hsa-miR-708-5p 0 0 1
chr11:65535266|65535370 hsa-miR-708-3p 0 0 1
chr11:65535266|65535370 hsa-miR-1206 0 0 1
chr11:65535266|65535370 hsa-miR-1291 0 0 1
chr11:65535266|65535370 hsa-miR-302e 0 0 1
chr11:65535266|65535370 hsa-miR-146b-3p 0 0 1
chr11:65535266|65535370 hsa-miR-28-5p 0 0 1
chr11:65535266|65535370 hsa-miR-362-5p 0 1 1
chr11:65535266|65535370 hsa-miR-520d-3p 0 0 1
chr11:65535266|65535370 hsa-miR-518a-5p 0 0 1
chr11:65535266|65535370 hsa-miR-520a-3p 0 0 1
chr11:65535266|65535370 hsa-miR-520c-3p 0 0 1
chr11:65535266|65535370 hsa-miR-1274b 0 0 1
chr11:65535266|65535370 hsa-miR-19b 0 0 1
chr11:65535266|65535370 hsa-miR-1538 1 0 0
chr11:65535266|65535370 hsa-miR-1973 0 1 0
chr11:65535266|65535370 hsa-miR-3135a 1 0 0
chr11:65535266|65535370 hsa-miR-3137 0 1 0
chr11:65535266|65535370 hsa-miR-3937 1 0 0
chr11:65535266|65535370 hsa-miR-4494 0 1 0
chr11:65535266|65535370 hsa-miR-4514 0 1 0
chr11:65535266|65535370 hsa-miR-3977 0 1 0
chr11:65535266|65535370 hsa-miR-4692 0 1 0
chr11:65535266|65535370 hsa-miR-5090 1 0 0
chr11:65535266|65535370 hsa-miR-92a-2-5p 0 1 0
chr11:65535266|65535370 hsa-miR-212-5p 0 1 0
chr11:65535266|65535370 hsa-miR-2467-5p 1 0 0
chr11:65535266|65535370 hsa-miR-5006-5p 1 0 0
chr11:65535266|65535370 hsa-miR-6735-3p 0 1 0
chr11:65535266|65535370 hsa-miR-1266-3p 0 1 0
chr11:65535266|65535370 hsa-miR-6789-5p 1 0 0
chr11:65535266|65535370 hsa-miR-7156-3p 1 0 0
chr11:65535266|65535370 hsa-miR-3675-5p 0 1 0
chr11:65535266|65535370 hsa-miR-10400-5p 1 0 0
chr11:65535266|65535370 hsa-miR-1915-3p 1 0 0
chr11:65535266|65535370 hsa-miR-6511a-5p 0 1 0
chr11:65535266|65535370 hsa-miR-6511b-5p 1 0 0
chr11:65535266|65535370 hsa-miR-6762-5p 1 0 0
chr11:65535266|65535370 hsa-miR-6775-3p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr11:65535266|65535370
ORF Type ORF1
Protein Length 31
Nucleotide Length 93
Protein Sequence MMKHFARLQAKDEQGPIRCNTTVCLGKIGSY
Nucleotide Sequence CTGATGAAGCACTTTGCACGGCTACAGGCCAAGGATGAACAGGGCCCCATCCGCTGCAACACCACAGTCTGCCTGGGCAAAATCGGCTCCTAC
CircID chr11:65535266|65535370
ORF Type ORF2
Protein Length 26
Nucleotide Length 78
Protein Sequence MHGYRPRMNRAPSAATPQSAWAKSAP
Nucleotide Sequence TTGCACGGCTACAGGCCAAGGATGAACAGGGCCCCATCCGCTGCAACACCACAGTCTGCCTGGGCAAAATCGGCTCCT
CircID chr11:65535266|65535370
ORF Type ORF3
Protein Length 30
Nucleotide Length 90
Protein Sequence MPRQTVVLQRMGPCSSLACSRAKCFISSTL
Nucleotide Sequence TTGCCCAGGCAGACTGTGGTGTTGCAGCGGATGGGGCCCTGTTCATCCTTGGCCTGTAGCCGTGCAAAGTGCTTCATCAGCTCCACATTG
CircID chr11:65535266|65535370
ORF Type ORF4
Protein Length 25
Nucleotide Length 78
Protein Sequence MWCCSGWGPVHPWPVAVQSASSAPH
Nucleotide Sequence CTGTGGTGTTGCAGCGGATGGGGCCCTGTTCATCCTTGGCCTGTAGCCGTGCAAAGTGCTTCATCAGCTCCACATTGA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab