CircRNA Information

General Information
circRNA Basic Information
CircID chr11:65583073|65583214
Strand +
CircType exon
Host Gene ENSG00000173442.10;
Algorism CIRI2;
Sequence CCCCGACCTCTGTCTCCTGGGCCCCAGCTACCTCAGATTCTAGCCCTGGGACCCCTGAACTCCTAGATGCTATCTCTTGGGTCCCCAATATCTCAGTTTCTGCTGTCCCAGTCGCTATCTCTGGAACCTCTGAACCCCCAAC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr11:65583073|65583214 hsa-let-7b-5p 0 0 1
chr11:65583073|65583214 hsa-let-7b-3p 0 0 1
chr11:65583073|65583214 hsa-let-7c-5p 0 0 1
chr11:65583073|65583214 hsa-let-7c-3p 0 0 1
chr11:65583073|65583214 hsa-let-7d-5p 0 0 1
chr11:65583073|65583214 hsa-let-7d-3p 0 0 1
chr11:65583073|65583214 hsa-let-7e-5p 0 0 1
chr11:65583073|65583214 hsa-let-7e-3p 0 0 1
chr11:65583073|65583214 hsa-miR-98-5p 0 0 1
chr11:65583073|65583214 hsa-miR-98-3p 0 0 1
chr11:65583073|65583214 hsa-let-7g-5p 0 0 1
chr11:65583073|65583214 hsa-let-7g-3p 0 0 1
chr11:65583073|65583214 hsa-let-7i-5p 0 0 1
chr11:65583073|65583214 hsa-let-7i-3p 0 0 1
chr11:65583073|65583214 hsa-miR-202-5p 0 0 1
chr11:65583073|65583214 hsa-miR-202-3p 0 0 1
chr11:65583073|65583214 hsa-miR-665 0 1 1
chr11:65583073|65583214 hsa-miR-922 0 0 1
chr11:65583073|65583214 hsa-miR-1275 1 0 1
chr11:65583073|65583214 hsa-miR-615-5p 1 1 1
chr11:65583073|65583214 hsa-miR-525-5p 0 1 1
chr11:65583073|65583214 hsa-miR-520a-5p 0 0 1
chr11:65583073|65583214 hsa-miR-1302 0 0 1
chr11:65583073|65583214 hsa-let-7a 0 0 1
chr11:65583073|65583214 hsa-let-7f 0 0 1
chr11:65583073|65583214 hsa-miR-198 1 0 0
chr11:65583073|65583214 hsa-miR-762 1 0 0
chr11:65583073|65583214 hsa-miR-298 0 1 0
chr11:65583073|65583214 hsa-miR-711 1 1 0
chr11:65583073|65583214 hsa-miR-3170 1 0 0
chr11:65583073|65583214 hsa-miR-4298 0 1 0
chr11:65583073|65583214 hsa-miR-4257 0 1 0
chr11:65583073|65583214 hsa-miR-4259 1 1 0
chr11:65583073|65583214 hsa-miR-4281 1 0 0
chr11:65583073|65583214 hsa-miR-3652 1 0 0
chr11:65583073|65583214 hsa-miR-3945 1 0 0
chr11:65583073|65583214 hsa-miR-4437 1 1 0
chr11:65583073|65583214 hsa-miR-4449 1 0 0
chr11:65583073|65583214 hsa-miR-4458 0 1 0
chr11:65583073|65583214 hsa-miR-4505 1 0 0
chr11:65583073|65583214 hsa-miR-1587 1 0 0
chr11:65583073|65583214 hsa-miR-4656 1 0 0
chr11:65583073|65583214 hsa-miR-4688 1 0 0
chr11:65583073|65583214 hsa-miR-4754 1 0 0
chr11:65583073|65583214 hsa-miR-5572 1 0 0
chr11:65583073|65583214 hsa-miR-5787 1 1 0
chr11:65583073|65583214 hsa-miR-6075 1 0 0
chr11:65583073|65583214 hsa-miR-8089 1 1 0
chr11:65583073|65583214 hsa-miR-12119 1 0 0
chr11:65583073|65583214 hsa-miR-12127 0 1 0
chr11:65583073|65583214 hsa-miR-4731-5p 1 1 0
chr11:65583073|65583214 hsa-miR-6840-3p 0 1 0
chr11:65583073|65583214 hsa-miR-6765-5p 1 0 0
chr11:65583073|65583214 hsa-miR-125b-1-3p 1 0 0
chr11:65583073|65583214 hsa-miR-6857-5p 1 0 0
chr11:65583073|65583214 hsa-miR-6510-5p 1 0 0
chr11:65583073|65583214 hsa-miR-1227-5p 1 1 0
chr11:65583073|65583214 hsa-miR-4768-3p 0 1 0
chr11:65583073|65583214 hsa-miR-4695-5p 0 1 0
chr11:65583073|65583214 hsa-miR-4474-3p 1 0 0
chr11:65583073|65583214 hsa-miR-6772-5p 1 0 0
chr11:65583073|65583214 hsa-miR-6793-5p 1 0 0
chr11:65583073|65583214 hsa-miR-23a-5p 1 1 0
chr11:65583073|65583214 hsa-miR-6810-5p 1 1 0
chr11:65583073|65583214 hsa-miR-6835-5p 1 0 0
chr11:65583073|65583214 hsa-miR-5088-5p 1 0 0
chr11:65583073|65583214 hsa-miR-7109-5p 1 0 0
chr11:65583073|65583214 hsa-miR-193b-5p 1 0 0
chr11:65583073|65583214 hsa-miR-4640-5p 1 0 0
chr11:65583073|65583214 hsa-miR-4756-3p 0 1 0
chr11:65583073|65583214 hsa-miR-4713-3p 1 0 0
chr11:65583073|65583214 hsa-miR-664b-5p 1 0 0
chr11:65583073|65583214 hsa-let-7a-5p 0 1 0
chr11:65583073|65583214 hsa-miR-5000-5p 1 0 0
chr11:65583073|65583214 hsa-miR-6801-5p 1 0 0
chr11:65583073|65583214 hsa-miR-4746-5p 0 1 0
chr11:65583073|65583214 hsa-miR-4283 1 0 0
chr11:65583073|65583214 hsa-miR-3144-5p 1 1 0
chr11:65583073|65583214 hsa-miR-1244 1 0 0
chr11:65583073|65583214 hsa-miR-4763-3p 1 0 0
chr11:65583073|65583214 hsa-miR-6769b-5p 1 0 0
chr11:65583073|65583214 hsa-miR-5001-5p 1 0 0
chr11:65583073|65583214 hsa-miR-6726-5p 1 0 0
chr11:65583073|65583214 hsa-miR-6752-5p 1 0 0
chr11:65583073|65583214 hsa-miR-6756-5p 1 0 0
chr11:65583073|65583214 hsa-miR-6803-5p 1 0 0
chr11:65583073|65583214 hsa-miR-6815-5p 1 0 0
chr11:65583073|65583214 hsa-miR-6842-5p 1 0 0
chr11:65583073|65583214 hsa-miR-6851-5p 1 0 0
chr11:65583073|65583214 hsa-miR-7110-5p 1 0 0
chr11:65583073|65583214 hsa-miR-6722-3p 1 0 0
chr11:65583073|65583214 hsa-miR-6751-5p 1 1 0
chr11:65583073|65583214 hsa-miR-3620-5p 1 0 0
chr11:65583073|65583214 hsa-miR-4685-5p 1 1 0
chr11:65583073|65583214 hsa-miR-4726-5p 1 0 0
chr11:65583073|65583214 hsa-miR-6846-5p 1 0 0
chr11:65583073|65583214 hsa-miR-6848-5p 1 0 0
chr11:65583073|65583214 hsa-miR-6831-5p 1 0 0
chr11:65583073|65583214 hsa-miR-6845-5p 1 0 0
chr11:65583073|65583214 hsa-miR-939-5p 1 0 0
chr11:65583073|65583214 hsa-miR-3198 1 0 0
chr11:65583073|65583214 hsa-miR-6773-5p 1 1 0
chr11:65583073|65583214 hsa-miR-1914-3p 1 0 0
chr11:65583073|65583214 hsa-miR-6855-5p 1 0 0
chr11:65583073|65583214 hsa-miR-4646-5p 1 0 0
chr11:65583073|65583214 hsa-miR-6762-5p 1 0 0
chr11:65583073|65583214 hsa-miR-10400-3p 1 0 0
chr11:65583073|65583214 hsa-miR-6764-5p 0 1 0
Target Genes
       

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Target miRNA Expression in different cancers

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circRNA Open Reading Frame (ORF)
CircID chr11:65583073|65583214
ORF Type ORF1
Protein Length 25
Nucleotide Length 75
Protein Sequence MLSLGSPISQFLLSQSLSLEPLNPQ
Nucleotide Sequence ATGCTATCTCTTGGGTCCCCAATATCTCAGTTTCTGCTGTCCCAGTCGCTATCTCTGGAACCTCTGAACCCCCAA
CircID chr11:65583073|65583214
ORF Type ORF2
Protein Length 29
Nucleotide Length 87
Protein Sequence MGTQEIASRSSGVPGLESEVAGAQETEVG
Nucleotide Sequence TTGGGGACCCAAGAGATAGCATCTAGGAGTTCAGGGGTCCCAGGGCTAGAATCTGAGGTAGCTGGGGCCCAGGAGACAGAGGTCGGG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab