CircRNA Information

General Information
circRNA Basic Information
CircID chr11:65855654|65856011
Strand -
CircType exon
Host Gene ENSG00000172757.11;
Algorism CIRI2;
Sequence CTGTCAGCTTCTTCTTGATGGCGTCCTTGGAGCTGGCATAAATCATTTTGCTCTTAAGGGGCGCAGACTCGGGGGCCCTGGACAGAAACACGCGTCAGGCAACTCCCAGCAACAGCAAAGCCACAGGTGACTTTGAGAAACCCTTGGGCTGGCAGTGAGGAGTCTTTTGTTACAACCCCCTCCCCCTCCAAACCCACACATCTGGGTTGACCAGGAGCCACAGAAGTTCCCATCATGAGAAAGGGGGCAGGTGACAGGAAGAAGTGCCAGAATGAGCTCACCAGAAGATAAACACCAGATCCTCCTTCTTGCTCTCCTTGGTCTCATAGGTTGCATCATAGAGGGCATAGCGGCAGTC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr11:65855654|65856011 hsa-miR-198 0 0 1
chr11:65855654|65856011 hsa-miR-224-5p 0 0 1
chr11:65855654|65856011 hsa-miR-224-3p 0 0 1
chr11:65855654|65856011 hsa-miR-433-5p 0 0 1
chr11:65855654|65856011 hsa-miR-433-3p 0 0 1
chr11:65855654|65856011 hsa-miR-495-5p 0 0 1
chr11:65855654|65856011 hsa-miR-495-3p 0 0 1
chr11:65855654|65856011 hsa-miR-520g-5p 0 0 1
chr11:65855654|65856011 hsa-miR-520g-3p 0 0 1
chr11:65855654|65856011 hsa-miR-520h 0 0 1
chr11:65855654|65856011 hsa-miR-629-5p 0 0 1
chr11:65855654|65856011 hsa-miR-629-3p 0 0 1
chr11:65855654|65856011 hsa-miR-1202 0 1 1
chr11:65855654|65856011 hsa-miR-1272 0 0 1
chr11:65855654|65856011 hsa-miR-548p 0 0 1
chr11:65855654|65856011 hsa-miR-1292-5p 0 0 1
chr11:65855654|65856011 hsa-miR-1292-3p 0 0 1
chr11:65855654|65856011 hsa-miR-513c-5p 0 0 1
chr11:65855654|65856011 hsa-miR-513c-3p 0 0 1
chr11:65855654|65856011 hsa-miR-1322 0 0 1
chr11:65855654|65856011 hsa-miR-769-5p 0 0 1
chr11:65855654|65856011 hsa-miR-296-5p 0 0 1
chr11:65855654|65856011 hsa-miR-576-3p 0 0 1
chr11:65855654|65856011 hsa-miR-324-3p 0 0 1
chr11:65855654|65856011 hsa-miR-491-3p 0 0 1
chr11:65855654|65856011 hsa-miR-371-5p 0 0 1
chr11:65855654|65856011 hsa-miR-644 0 0 1
chr11:65855654|65856011 hsa-miR-768-5p 0 0 1
chr11:65855654|65856011 hsa-miR-1201 0 0 1
chr11:65855654|65856011 hsa-miR-147 0 0 1
chr11:65855654|65856011 hsa-miR-194 0 0 1
chr11:65855654|65856011 hsa-miR-637 1 0 0
chr11:65855654|65856011 hsa-miR-1913 0 1 0
chr11:65855654|65856011 hsa-miR-4265 1 0 0
chr11:65855654|65856011 hsa-miR-4428 0 1 0
chr11:65855654|65856011 hsa-miR-4488 1 0 0
chr11:65855654|65856011 hsa-miR-3972 0 1 0
chr11:65855654|65856011 hsa-miR-4654 1 0 0
chr11:65855654|65856011 hsa-miR-4682 1 0 0
chr11:65855654|65856011 hsa-miR-4686 1 0 0
chr11:65855654|65856011 hsa-miR-4706 1 0 0
chr11:65855654|65856011 hsa-miR-4739 1 0 0
chr11:65855654|65856011 hsa-miR-5685 0 1 0
chr11:65855654|65856011 hsa-miR-5695 0 1 0
chr11:65855654|65856011 hsa-miR-6069 1 0 0
chr11:65855654|65856011 hsa-miR-6133 1 0 0
chr11:65855654|65856011 hsa-miR-12115 1 0 0
chr11:65855654|65856011 hsa-miR-12118 0 1 0
chr11:65855654|65856011 hsa-miR-12128 0 1 0
chr11:65855654|65856011 hsa-miR-138-5p 1 0 0
chr11:65855654|65856011 hsa-miR-93-3p 1 0 0
chr11:65855654|65856011 hsa-miR-7106-5p 1 0 0
chr11:65855654|65856011 hsa-miR-6894-5p 1 0 0
chr11:65855654|65856011 hsa-miR-766-5p 1 0 0
chr11:65855654|65856011 hsa-miR-4786-5p 0 1 0
chr11:65855654|65856011 hsa-miR-6875-3p 1 1 0
chr11:65855654|65856011 hsa-miR-4474-3p 0 1 0
chr11:65855654|65856011 hsa-miR-423-3p 1 0 0
chr11:65855654|65856011 hsa-miR-6793-5p 1 1 0
chr11:65855654|65856011 hsa-miR-31-3p 0 1 0
chr11:65855654|65856011 hsa-miR-6732-5p 1 0 0
chr11:65855654|65856011 hsa-miR-6827-5p 1 0 0
chr11:65855654|65856011 hsa-miR-6798-5p 1 0 0
chr11:65855654|65856011 hsa-miR-6782-5p 1 0 0
chr11:65855654|65856011 hsa-miR-6753-5p 0 1 0
chr11:65855654|65856011 hsa-miR-3677-3p 1 0 0
chr11:65855654|65856011 hsa-miR-4732-5p 1 0 0
chr11:65855654|65856011 hsa-miR-4743-3p 0 1 0
chr11:65855654|65856011 hsa-miR-1304-3p 0 1 0
chr11:65855654|65856011 hsa-miR-7160-3p 0 1 0
chr11:65855654|65856011 hsa-miR-4778-3p 0 1 0
chr11:65855654|65856011 hsa-miR-6814-5p 0 1 0
chr11:65855654|65856011 hsa-miR-6773-3p 0 1 0
chr11:65855654|65856011 hsa-miR-3670 1 1 0
chr11:65855654|65856011 hsa-miR-6847-3p 1 0 0
chr11:65855654|65856011 hsa-miR-7158-5p 1 0 0
chr11:65855654|65856011 hsa-miR-4714-3p 0 1 0
chr11:65855654|65856011 hsa-miR-548at-5p 0 1 0
chr11:65855654|65856011 hsa-miR-6890-3p 0 1 0
chr11:65855654|65856011 hsa-miR-4677-3p 0 1 0
chr11:65855654|65856011 hsa-miR-6787-5p 1 0 0
chr11:65855654|65856011 hsa-miR-6870-5p 1 1 0
chr11:65855654|65856011 hsa-miR-1343-5p 1 0 0
chr11:65855654|65856011 hsa-miR-6743-5p 1 0 0
chr11:65855654|65856011 hsa-miR-6752-5p 1 0 0
chr11:65855654|65856011 hsa-miR-6754-5p 1 0 0
chr11:65855654|65856011 hsa-miR-6842-5p 1 0 0
chr11:65855654|65856011 hsa-miR-6851-5p 1 0 0
chr11:65855654|65856011 hsa-miR-7111-5p 1 0 0
chr11:65855654|65856011 hsa-miR-4728-5p 1 1 0
chr11:65855654|65856011 hsa-miR-328-5p 1 0 0
chr11:65855654|65856011 hsa-miR-4649-5p 1 0 0
chr11:65855654|65856011 hsa-miR-4685-5p 0 1 0
chr11:65855654|65856011 hsa-miR-6738-5p 1 0 0
chr11:65855654|65856011 hsa-miR-6794-5p 1 1 0
chr11:65855654|65856011 hsa-miR-6858-5p 1 0 0
chr11:65855654|65856011 hsa-miR-6883-5p 0 1 0
chr11:65855654|65856011 hsa-miR-4723-5p 0 1 0
chr11:65855654|65856011 hsa-miR-6831-5p 1 0 0
chr11:65855654|65856011 hsa-miR-939-5p 1 0 0
chr11:65855654|65856011 hsa-miR-6731-5p 1 0 0
chr11:65855654|65856011 hsa-miR-541-3p 1 0 0
chr11:65855654|65856011 hsa-miR-6785-5p 0 1 0
chr11:65855654|65856011 hsa-miR-769-3p 1 0 0
chr11:65855654|65856011 hsa-miR-3059-5p 1 0 0
chr11:65855654|65856011 hsa-miR-1295b-5p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr11:65855654|65856011
ORF Type ORF1
Protein Length 25
Nucleotide Length 78
Protein Sequence MRNPWAGSEESFVTTPSPSKPTHLG
Nucleotide Sequence TTGAGAAACCCTTGGGCTGGCAGTGAGGAGTCTTTTGTTACAACCCCCTCCCCCTCCAAACCCACACATCTGGGTTGA
CircID chr11:65855654|65856011
ORF Type ORF2
Protein Length 29
Nucleotide Length 90
Protein Sequence MAVRSLLLQPPPPPNPHIWVDQEPQKFPS
Nucleotide Sequence CTGGCAGTGAGGAGTCTTTTGTTACAACCCCCTCCCCCTCCAAACCCACACATCTGGGTTGACCAGGAGCCACAGAAGTTCCCATCATGA
CircID chr11:65855654|65856011
ORF Type ORF3
Protein Length 29
Nucleotide Length 87
Protein Sequence MSSPEDKHQILLLALLGLIGCIIEGIAAV
Nucleotide Sequence ATGAGCTCACCAGAAGATAAACACCAGATCCTCCTTCTTGCTCTCCTTGGTCTCATAGGTTGCATCATAGAGGGCATAGCGGCAGTC
CircID chr11:65855654|65856011
ORF Type ORF4
Protein Length 36
Nucleotide Length 111
Protein Sequence MLLRGADSGALDRNTRQATPSNSKATGDFEKPLGWQ
Nucleotide Sequence TTGCTCTTAAGGGGCGCAGACTCGGGGGCCCTGGACAGAAACACGCGTCAGGCAACTCCCAGCAACAGCAAAGCCACAGGTGACTTTGAGAAACCCTTGGGCTGGCAGTGA
CircID chr11:65855654|65856011
ORF Type ORF5
Protein Length 28
Nucleotide Length 84
Protein Sequence MSRAPESAPLKSKMIYASSKDAIKKKLT
Nucleotide Sequence CTGTCCAGGGCCCCCGAGTCTGCGCCCCTTAAGAGCAAAATGATTTATGCCAGCTCCAAGGACGCCATCAAGAAGAAGCTGACA
CircID chr11:65855654|65856011
ORF Type ORF6
Protein Length 101
Nucleotide Length 306
Protein Sequence MPSMMQPMRPRRARRRIWCLSSGELILALLPVTCPLSHDGNFCGSWSTQMCGFGGGGGCNKRLLTASPRVSQSHLWLCCCWELPDACFCPGPPSLRPLRAK
Nucleotide Sequence ATGCCCTCTATGATGCAACCTATGAGACCAAGGAGAGCAAGAAGGAGGATCTGGTGTTTATCTTCTGGTGAGCTCATTCTGGCACTTCTTCCTGTCACCTGCCCCCTTTCTCATGATGGGAACTTCTGTGGCTCCTGGTCAACCCAGATGTGTGGGTTTGGAGGGGGAGGGGGTTGTAACAAAAGACTCCTCACTGCCAGCCCAAGGGTTTCTCAAAGTCACCTGTGGCTTTGCTGTTGCTGGGAGTTGCCTGACGCGTGTTTCTGTCCAGGGCCCCCGAGTCTGCGCCCCTTAAGAGCAAAATGA
CircID chr11:65855654|65856011
ORF Type ORF7
Protein Length 76
Nucleotide Length 231
Protein Sequence MVSSFWHFFLSPAPFLMMGTSVAPGQPRCVGLEGEGVVTKDSSLPAQGFLKVTCGFAVAGSCLTRVSVQGPRVCAP
Nucleotide Sequence CTGGTGAGCTCATTCTGGCACTTCTTCCTGTCACCTGCCCCCTTTCTCATGATGGGAACTTCTGTGGCTCCTGGTCAACCCAGATGTGTGGGTTTGGAGGGGGAGGGGGTTGTAACAAAAGACTCCTCACTGCCAGCCCAAGGGTTTCTCAAAGTCACCTGTGGCTTTGCTGTTGCTGGGAGTTGCCTGACGCGTGTTTCTGTCCAGGGCCCCCGAGTCTGCGCCCCTTAA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab