CircRNA Information

General Information
circRNA Basic Information
CircID chr11:66063517|66063729
Strand +
CircType exon
Host Gene ENSG00000087365.13;
Algorism CIRI2;
Sequence CCGTCCATCGCCTCCTCAATCTTCTTCTTCCTCAGCTCAATGAGTTCAGGGGTCTCCATTCCAGCAGGCACTGATGAAAAGCCTCCAGGAGTGATAAGGCCACTGTAAAGAGAGGAACAAGCTCTGGAGTAAAGAGAAGGACCCCAAAGATAGCCCACTTCCAAGAGGCATTCTCTGCTTCCCCCACCTGTCTGCAGGGGTAATAAAGCCTGT
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr11:66063517|66063729 hsa-miR-148a-5p 0 0 1
chr11:66063517|66063729 hsa-miR-148a-3p 0 0 1
chr11:66063517|66063729 hsa-miR-152-5p 0 0 1
chr11:66063517|66063729 hsa-miR-152-3p 0 0 1
chr11:66063517|66063729 hsa-miR-184 0 0 1
chr11:66063517|66063729 hsa-miR-206 0 0 1
chr11:66063517|66063729 hsa-miR-370-5p 0 0 1
chr11:66063517|66063729 hsa-miR-370-3p 0 0 1
chr11:66063517|66063729 hsa-miR-148b-5p 0 0 1
chr11:66063517|66063729 hsa-miR-148b-3p 0 0 1
chr11:66063517|66063729 hsa-miR-432-5p 0 0 1
chr11:66063517|66063729 hsa-miR-432-3p 0 0 1
chr11:66063517|66063729 hsa-miR-519e-5p 0 0 1
chr11:66063517|66063729 hsa-miR-519e-3p 0 0 1
chr11:66063517|66063729 hsa-miR-552-5p 0 0 1
chr11:66063517|66063729 hsa-miR-552-3p 0 0 1
chr11:66063517|66063729 hsa-miR-558 0 0 1
chr11:66063517|66063729 hsa-miR-613 0 0 1
chr11:66063517|66063729 hsa-miR-625-5p 0 0 1
chr11:66063517|66063729 hsa-miR-625-3p 0 0 1
chr11:66063517|66063729 hsa-miR-650 0 0 1
chr11:66063517|66063729 hsa-miR-942-5p 0 0 1
chr11:66063517|66063729 hsa-miR-942-3p 0 0 1
chr11:66063517|66063729 hsa-miR-1237-5p 0 0 1
chr11:66063517|66063729 hsa-miR-1237-3p 0 0 1
chr11:66063517|66063729 hsa-miR-1287-5p 0 0 1
chr11:66063517|66063729 hsa-miR-1287-3p 0 0 1
chr11:66063517|66063729 hsa-miR-1248 0 0 1
chr11:66063517|66063729 hsa-miR-1275 0 0 1
chr11:66063517|66063729 hsa-miR-1324 0 0 1
chr11:66063517|66063729 hsa-miR-1224-5p 0 0 1
chr11:66063517|66063729 hsa-miR-615-5p 0 0 1
chr11:66063517|66063729 hsa-miR-525-5p 0 0 1
chr11:66063517|66063729 hsa-miR-508-5p 1 0 1
chr11:66063517|66063729 hsa-miR-582-5p 0 0 1
chr11:66063517|66063729 hsa-miR-34c-3p 0 0 1
chr11:66063517|66063729 hsa-miR-520a-5p 0 0 1
chr11:66063517|66063729 hsa-miR-483-3p 0 0 1
chr11:66063517|66063729 hsa-miR-515-3p 0 0 1
chr11:66063517|66063729 hsa-miR-556-3p 0 0 1
chr11:66063517|66063729 hsa-miR-550 0 0 1
chr11:66063517|66063729 hsa-miR-9 0 0 1
chr11:66063517|66063729 hsa-miR-1 0 0 1
chr11:66063517|66063729 hsa-miR-637 1 0 0
chr11:66063517|66063729 hsa-miR-665 1 0 0
chr11:66063517|66063729 hsa-miR-3185 1 0 0
chr11:66063517|66063729 hsa-miR-3188 1 0 0
chr11:66063517|66063729 hsa-miR-3196 1 0 0
chr11:66063517|66063729 hsa-miR-4322 1 0 0
chr11:66063517|66063729 hsa-miR-4271 1 0 0
chr11:66063517|66063729 hsa-miR-3916 1 0 0
chr11:66063517|66063729 hsa-miR-4539 1 0 0
chr11:66063517|66063729 hsa-miR-4656 1 0 0
chr11:66063517|66063729 hsa-miR-4689 1 0 0
chr11:66063517|66063729 hsa-miR-4706 1 0 0
chr11:66063517|66063729 hsa-miR-4741 1 0 0
chr11:66063517|66063729 hsa-miR-5698 1 0 0
chr11:66063517|66063729 hsa-miR-6088 1 0 0
chr11:66063517|66063729 hsa-miR-6124 1 0 0
chr11:66063517|66063729 hsa-miR-6127 1 0 0
chr11:66063517|66063729 hsa-miR-8089 1 0 0
chr11:66063517|66063729 hsa-miR-6510-5p 1 0 0
chr11:66063517|66063729 hsa-miR-7847-3p 1 0 0
chr11:66063517|66063729 hsa-miR-769-5p 1 0 0
chr11:66063517|66063729 hsa-miR-6746-5p 1 0 0
chr11:66063517|66063729 hsa-miR-8069 1 0 0
chr11:66063517|66063729 hsa-miR-6793-5p 1 0 0
chr11:66063517|66063729 hsa-miR-6782-5p 1 0 0
chr11:66063517|66063729 hsa-miR-7109-5p 1 0 0
chr11:66063517|66063729 hsa-miR-664b-5p 1 0 0
chr11:66063517|66063729 hsa-miR-3158-3p 1 0 0
chr11:66063517|66063729 hsa-miR-6812-5p 1 0 0
chr11:66063517|66063729 hsa-miR-1343-5p 1 0 0
chr11:66063517|66063729 hsa-miR-6756-5p 1 0 0
chr11:66063517|66063729 hsa-miR-6803-5p 1 0 0
chr11:66063517|66063729 hsa-miR-6851-5p 1 0 0
chr11:66063517|66063729 hsa-miR-1249-5p 1 0 0
chr11:66063517|66063729 hsa-miR-7111-5p 1 0 0
chr11:66063517|66063729 hsa-miR-3620-5p 1 0 0
chr11:66063517|66063729 hsa-miR-4649-5p 1 0 0
chr11:66063517|66063729 hsa-miR-4685-5p 1 0 0
chr11:66063517|66063729 hsa-miR-6795-5p 1 0 0
chr11:66063517|66063729 hsa-miR-6848-5p 1 0 0
chr11:66063517|66063729 hsa-miR-6858-5p 1 0 0
chr11:66063517|66063729 hsa-miR-939-5p 1 0 0
chr11:66063517|66063729 hsa-miR-4758-5p 1 0 0
chr11:66063517|66063729 hsa-miR-30c-1-3p 1 0 0
chr11:66063517|66063729 hsa-miR-4667-5p 1 0 0
chr11:66063517|66063729 hsa-miR-6876-3p 1 0 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr11:66063517|66063729
ORF Type ORF1
Protein Length 41
Nucleotide Length 126
Protein Sequence MPLGSGLSLGSFSLLQSLFLSLQWPYHSWRLFISACWNGDP
Nucleotide Sequence ATGCCTCTTGGAAGTGGGCTATCTTTGGGGTCCTTCTCTTTACTCCAGAGCTTGTTCCTCTCTTTACAGTGGCCTTATCACTCCTGGAGGCTTTTCATCAGTGCCTGCTGGAATGGAGACCCCTGA
CircID chr11:66063517|66063729
ORF Type ORF2
Protein Length 65
Nucleotide Length 195
Protein Sequence MQTGGGSRECLLEVGYLWGPSLYSRACSSLYSGLITPGGFSSVPAGMETPELIELRKKKIEEAMD
Nucleotide Sequence CTGCAGACAGGTGGGGGAAGCAGAGAATGCCTCTTGGAAGTGGGCTATCTTTGGGGTCCTTCTCTTTACTCCAGAGCTTGTTCCTCTCTTTACAGTGGCCTTATCACTCCTGGAGGCTTTTCATCAGTGCCTGCTGGAATGGAGACCCCTGAACTCATTGAGCTGAGGAAGAAGAAGATTGAGGAGGCGATGGAC
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab