CircRNA Information

General Information
circRNA Basic Information
CircID chr11:6613602|6613739
Strand +
CircType exon
Host Gene ENSG00000166340.13;
Algorism CIRI2;
Sequence CTGTGTCATCTTTTCACCCCACCTTCAATCAACAAGTCCTCAATCAACAAGTCCTACTGACTGCACATCTTAAATATATCTTTATCAGTCCACAAGTCCTTCCAATTATATTTCCCAAGTATATCTAGAACTTATCCA
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr11:6613602|6613739 hsa-miR-425-5p 0 0 1
chr11:6613602|6613739 hsa-miR-425-3p 0 0 1
chr11:6613602|6613739 hsa-miR-493-5p 0 0 1
chr11:6613602|6613739 hsa-miR-493-3p 0 0 1
chr11:6613602|6613739 hsa-miR-608 0 0 1
chr11:6613602|6613739 hsa-miR-653-5p 0 0 1
chr11:6613602|6613739 hsa-miR-653-3p 0 0 1
chr11:6613602|6613739 hsa-miR-890 0 0 1
chr11:6613602|6613739 hsa-miR-936 0 0 1
chr11:6613602|6613739 hsa-miR-1261 0 0 1
chr11:6613602|6613739 hsa-miR-1288-5p 0 0 1
chr11:6613602|6613739 hsa-miR-1288-3p 0 0 1
chr11:6613602|6613739 hsa-miR-1224-5p 1 0 1
chr11:6613602|6613739 hsa-miR-576-3p 0 0 1
chr11:6613602|6613739 hsa-miR-199b-3p 0 0 1
chr11:6613602|6613739 hsa-miR-199a-3p 0 0 1
chr11:6613602|6613739 hsa-miR-342-5p 0 0 1
chr11:6613602|6613739 hsa-miR-518d-5p 0 0 1
chr11:6613602|6613739 hsa-miR-519b-5p 0 0 1
chr11:6613602|6613739 hsa-miR-519c-5p 0 0 1
chr11:6613602|6613739 hsa-miR-520c-5p 0 0 1
chr11:6613602|6613739 hsa-miR-1269 0 0 1
chr11:6613602|6613739 hsa-miR-526a 0 0 1
chr11:6613602|6613739 hsa-miR-1182 1 0 0
chr11:6613602|6613739 hsa-miR-1270 1 0 0
chr11:6613602|6613739 hsa-miR-3131 1 0 0
chr11:6613602|6613739 hsa-miR-3188 1 0 0
chr11:6613602|6613739 hsa-miR-4322 1 0 0
chr11:6613602|6613739 hsa-miR-4476 1 1 0
chr11:6613602|6613739 hsa-miR-4491 1 0 0
chr11:6613602|6613739 hsa-miR-2392 1 0 0
chr11:6613602|6613739 hsa-miR-4533 1 1 0
chr11:6613602|6613739 hsa-miR-4534 1 0 0
chr11:6613602|6613739 hsa-miR-4656 1 0 0
chr11:6613602|6613739 hsa-miR-4689 1 0 0
chr11:6613602|6613739 hsa-miR-4721 1 0 0
chr11:6613602|6613739 hsa-miR-4751 1 0 0
chr11:6613602|6613739 hsa-miR-4752 1 0 0
chr11:6613602|6613739 hsa-miR-8083 0 1 0
chr11:6613602|6613739 hsa-miR-8085 1 0 0
chr11:6613602|6613739 hsa-miR-8089 1 0 0
chr11:6613602|6613739 hsa-miR-8071 1 0 0
chr11:6613602|6613739 hsa-miR-6804-5p 1 0 0
chr11:6613602|6613739 hsa-miR-6515-5p 1 0 0
chr11:6613602|6613739 hsa-miR-7847-3p 1 0 0
chr11:6613602|6613739 hsa-miR-7154-3p 1 0 0
chr11:6613602|6613739 hsa-miR-8069 1 0 0
chr11:6613602|6613739 hsa-miR-6742-5p 1 1 0
chr11:6613602|6613739 hsa-miR-6796-5p 1 1 0
chr11:6613602|6613739 hsa-miR-3190-3p 1 0 0
chr11:6613602|6613739 hsa-miR-6786-5p 1 0 0
chr11:6613602|6613739 hsa-miR-1226-5p 1 0 0
chr11:6613602|6613739 hsa-miR-3127-5p 1 0 0
chr11:6613602|6613739 hsa-miR-6771-5p 1 0 0
chr11:6613602|6613739 hsa-miR-6834-5p 1 0 0
chr11:6613602|6613739 hsa-miR-149-3p 1 0 0
chr11:6613602|6613739 hsa-miR-4740-5p 1 0 0
chr11:6613602|6613739 hsa-miR-3191-3p 1 0 0
chr11:6613602|6613739 hsa-miR-6769b-5p 1 0 0
chr11:6613602|6613739 hsa-miR-6778-5p 1 0 0
chr11:6613602|6613739 hsa-miR-6812-5p 0 1 0
chr11:6613602|6613739 hsa-miR-6865-5p 1 0 0
chr11:6613602|6613739 hsa-miR-6756-5p 1 0 0
chr11:6613602|6613739 hsa-miR-6819-5p 0 1 0
chr11:6613602|6613739 hsa-miR-6851-5p 1 0 0
chr11:6613602|6613739 hsa-miR-1249-5p 1 0 0
chr11:6613602|6613739 hsa-miR-6763-5p 1 0 0
chr11:6613602|6613739 hsa-miR-6774-5p 1 0 0
chr11:6613602|6613739 hsa-miR-6779-5p 1 0 0
chr11:6613602|6613739 hsa-miR-6797-5p 1 0 0
chr11:6613602|6613739 hsa-miR-6794-5p 1 0 0
chr11:6613602|6613739 hsa-miR-6858-5p 1 0 0
chr11:6613602|6613739 hsa-miR-4758-5p 1 0 0
chr11:6613602|6613739 hsa-miR-4769-5p 1 0 0
chr11:6613602|6613739 hsa-miR-365a-5p 1 0 0
chr11:6613602|6613739 hsa-miR-3679-5p 1 0 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr11:6613602|6613739
ORF Type ORF1
Protein Length 26
Nucleotide Length 78
Protein Sequence MHILNISLSVHKSFQLYFPSISRTYP
Nucleotide Sequence CTGCACATCTTAAATATATCTTTATCAGTCCACAAGTCCTTCCAATTATATTTCCCAAGTATATCTAGAACTTATCCA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab