CircRNA Information

General Information
circRNA Basic Information
CircID chr11:67255800|67255968
Strand -
CircType exon
Host Gene ENSG00000173120.13;
Algorism CIRI2;
Sequence ACACCCATTTCGTTGCTACCCAAGTGGATTCTGAGACAGGCACCATCTCCTTGTTCCCCCTCTCTCTTTTGCCTCCCACTGACTGCCCTTTTCCATGTGTCTTCATTCTGCCTGAAGAAGGCTTTCCCAGGATGCACGTCCTCAGAGGGAGCAGCCTATCTCCCCCAAG
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr11:67255800|67255968 hsa-miR-517-5p 0 0 1
chr11:67255800|67255968 hsa-miR-517b-3p 0 0 1
chr11:67255800|67255968 hsa-miR-609 0 0 1
chr11:67255800|67255968 hsa-miR-625-5p 0 0 1
chr11:67255800|67255968 hsa-miR-625-3p 0 0 1
chr11:67255800|67255968 hsa-miR-650 1 0 1
chr11:67255800|67255968 hsa-miR-891a-5p 0 0 1
chr11:67255800|67255968 hsa-miR-891a-3p 0 0 1
chr11:67255800|67255968 hsa-miR-1248 0 0 1
chr11:67255800|67255968 hsa-miR-1275 1 0 1
chr11:67255800|67255968 hsa-miR-1224-5p 1 0 1
chr11:67255800|67255968 hsa-miR-324-5p 0 0 1
chr11:67255800|67255968 hsa-miR-1225-5p 1 0 1
chr11:67255800|67255968 hsa-miR-550 0 0 1
chr11:67255800|67255968 hsa-miR-642 0 0 1
chr11:67255800|67255968 hsa-miR-765 1 0 0
chr11:67255800|67255968 hsa-miR-298 1 0 0
chr11:67255800|67255968 hsa-miR-3141 1 0 0
chr11:67255800|67255968 hsa-miR-3154 1 0 0
chr11:67255800|67255968 hsa-miR-3185 1 0 0
chr11:67255800|67255968 hsa-miR-4298 1 0 0
chr11:67255800|67255968 hsa-miR-3612 1 0 0
chr11:67255800|67255968 hsa-miR-3937 1 0 0
chr11:67255800|67255968 hsa-miR-4428 1 0 0
chr11:67255800|67255968 hsa-miR-4516 1 0 0
chr11:67255800|67255968 hsa-miR-4525 1 0 0
chr11:67255800|67255968 hsa-miR-4648 1 0 0
chr11:67255800|67255968 hsa-miR-4673 1 0 0
chr11:67255800|67255968 hsa-miR-4688 1 0 0
chr11:67255800|67255968 hsa-miR-4689 1 0 0
chr11:67255800|67255968 hsa-miR-4692 1 0 0
chr11:67255800|67255968 hsa-miR-4739 1 0 0
chr11:67255800|67255968 hsa-miR-4741 1 0 0
chr11:67255800|67255968 hsa-miR-5090 1 0 0
chr11:67255800|67255968 hsa-miR-5194 1 0 0
chr11:67255800|67255968 hsa-miR-5739 1 0 0
chr11:67255800|67255968 hsa-miR-6085 1 0 0
chr11:67255800|67255968 hsa-miR-6124 1 0 0
chr11:67255800|67255968 hsa-miR-6127 1 0 0
chr11:67255800|67255968 hsa-miR-6133 1 0 0
chr11:67255800|67255968 hsa-miR-8085 1 0 0
chr11:67255800|67255968 hsa-miR-8089 1 0 0
chr11:67255800|67255968 hsa-miR-7106-5p 1 0 0
chr11:67255800|67255968 hsa-miR-6799-5p 1 0 0
chr11:67255800|67255968 hsa-miR-3192-5p 1 0 0
chr11:67255800|67255968 hsa-miR-6757-5p 1 0 0
chr11:67255800|67255968 hsa-miR-4695-5p 1 0 0
chr11:67255800|67255968 hsa-miR-4653-3p 1 0 0
chr11:67255800|67255968 hsa-miR-7154-3p 1 0 0
chr11:67255800|67255968 hsa-miR-6721-5p 1 0 0
chr11:67255800|67255968 hsa-miR-7845-5p 1 0 0
chr11:67255800|67255968 hsa-miR-3151-5p 1 0 0
chr11:67255800|67255968 hsa-miR-3180-3p 1 0 0
chr11:67255800|67255968 hsa-miR-6748-5p 1 0 0
chr11:67255800|67255968 hsa-miR-3190-3p 1 0 0
chr11:67255800|67255968 hsa-miR-6827-5p 1 0 0
chr11:67255800|67255968 hsa-miR-6798-5p 1 0 0
chr11:67255800|67255968 hsa-miR-486-3p 1 0 0
chr11:67255800|67255968 hsa-miR-6760-5p 1 0 0
chr11:67255800|67255968 hsa-miR-6782-5p 1 0 0
chr11:67255800|67255968 hsa-miR-30b-3p 1 0 0
chr11:67255800|67255968 hsa-miR-6786-5p 1 0 0
chr11:67255800|67255968 hsa-miR-7109-5p 1 0 0
chr11:67255800|67255968 hsa-miR-1226-5p 1 0 0
chr11:67255800|67255968 hsa-miR-4717-3p 1 0 0
chr11:67255800|67255968 hsa-miR-4743-5p 1 0 0
chr11:67255800|67255968 hsa-miR-149-3p 1 0 0
chr11:67255800|67255968 hsa-miR-6802-5p 1 0 0
chr11:67255800|67255968 hsa-miR-6828-5p 1 0 0
chr11:67255800|67255968 hsa-miR-423-5p 1 0 0
chr11:67255800|67255968 hsa-miR-1233-5p 1 0 0
chr11:67255800|67255968 hsa-miR-1273h-5p 1 0 0
chr11:67255800|67255968 hsa-miR-4763-3p 1 0 0
chr11:67255800|67255968 hsa-miR-6769b-5p 1 0 0
chr11:67255800|67255968 hsa-miR-6778-5p 1 0 0
chr11:67255800|67255968 hsa-miR-6870-5p 1 0 0
chr11:67255800|67255968 hsa-miR-1343-5p 1 0 0
chr11:67255800|67255968 hsa-miR-6743-5p 1 0 0
chr11:67255800|67255968 hsa-miR-6756-5p 1 0 0
chr11:67255800|67255968 hsa-miR-6803-5p 1 0 0
chr11:67255800|67255968 hsa-miR-1249-5p 1 0 0
chr11:67255800|67255968 hsa-miR-6751-5p 1 0 0
chr11:67255800|67255968 hsa-miR-6779-5p 1 0 0
chr11:67255800|67255968 hsa-miR-6780a-5p 1 0 0
chr11:67255800|67255968 hsa-miR-6788-5p 1 0 0
chr11:67255800|67255968 hsa-miR-6797-5p 1 0 0
chr11:67255800|67255968 hsa-miR-6879-5p 1 0 0
chr11:67255800|67255968 hsa-miR-7111-5p 1 0 0
chr11:67255800|67255968 hsa-miR-4728-5p 1 0 0
chr11:67255800|67255968 hsa-miR-5196-5p 1 0 0
chr11:67255800|67255968 hsa-miR-6780b-5p 1 0 0
chr11:67255800|67255968 hsa-miR-10526-3p 1 0 0
chr11:67255800|67255968 hsa-miR-328-5p 1 0 0
chr11:67255800|67255968 hsa-miR-4632-5p 1 0 0
chr11:67255800|67255968 hsa-miR-4649-5p 1 0 0
chr11:67255800|67255968 hsa-miR-6735-5p 1 0 0
chr11:67255800|67255968 hsa-miR-6794-5p 1 0 0
chr11:67255800|67255968 hsa-miR-6795-5p 1 0 0
chr11:67255800|67255968 hsa-miR-6883-5p 1 0 0
chr11:67255800|67255968 hsa-miR-6887-5p 1 0 0
chr11:67255800|67255968 hsa-miR-4436b-3p 1 0 0
chr11:67255800|67255968 hsa-miR-4723-5p 1 0 0
chr11:67255800|67255968 hsa-miR-6831-5p 1 0 0
chr11:67255800|67255968 hsa-miR-6885-5p 1 0 0
chr11:67255800|67255968 hsa-miR-939-5p 1 0 0
chr11:67255800|67255968 hsa-miR-4758-5p 1 0 0
chr11:67255800|67255968 hsa-miR-4769-5p 1 0 0
chr11:67255800|67255968 hsa-miR-6511a-5p 1 0 0
chr11:67255800|67255968 hsa-miR-6511b-5p 1 0 0
chr11:67255800|67255968 hsa-miR-30c-1-3p 1 0 0
chr11:67255800|67255968 hsa-miR-6731-5p 1 0 0
chr11:67255800|67255968 hsa-miR-6758-5p 1 0 0
chr11:67255800|67255968 hsa-miR-6856-5p 1 0 0
chr11:67255800|67255968 hsa-miR-6891-5p 1 0 0
chr11:67255800|67255968 hsa-miR-4472 1 0 0
chr11:67255800|67255968 hsa-miR-4716-3p 1 0 0
chr11:67255800|67255968 hsa-miR-6750-5p 1 0 0
chr11:67255800|67255968 hsa-miR-6785-5p 1 0 0
chr11:67255800|67255968 hsa-miR-4756-5p 1 0 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr11:67255800|67255968
ORF Type ORF1
Protein Length 52
Nucleotide Length 156
Protein Sequence MLPKWILRQAPSPCSPSLFCLPLTALFHVSSFCLKKAFPGCTSSEGAAYLPQ
Nucleotide Sequence TTGCTACCCAAGTGGATTCTGAGACAGGCACCATCTCCTTGTTCCCCCTCTCTCTTTTGCCTCCCACTGACTGCCCTTTTCCATGTGTCTTCATTCTGCCTGAAGAAGGCTTTCCCAGGATGCACGTCCTCAGAGGGAGCAGCCTATCTCCCCCAA
CircID chr11:67255800|67255968
ORF Type ORF2
Protein Length 39
Nucleotide Length 117
Protein Sequence MFPLSLLPPTDCPFPCVFILPEEGFPRMHVLRGSSLSPP
Nucleotide Sequence TTGTTCCCCCTCTCTCTTTTGCCTCCCACTGACTGCCCTTTTCCATGTGTCTTCATTCTGCCTGAAGAAGGCTTTCCCAGGATGCACGTCCTCAGAGGGAGCAGCCTATCTCCCCCA
CircID chr11:67255800|67255968
ORF Type ORF3
Protein Length 51
Nucleotide Length 153
Protein Sequence MLPLRTCILGKPSSGRMKTHGKGQSVGGKRERGNKEMVPVSESTWVATKWV
Nucleotide Sequence CTGCTCCCTCTGAGGACGTGCATCCTGGGAAAGCCTTCTTCAGGCAGAATGAAGACACATGGAAAAGGGCAGTCAGTGGGAGGCAAAAGAGAGAGGGGGAACAAGGAGATGGTGCCTGTCTCAGAATCCACTTGGGTAGCAACGAAATGGGTG
CircID chr11:67255800|67255968
ORF Type ORF4
Protein Length 26
Nucleotide Length 81
Protein Sequence MEKGSQWEAKERGGTRRWCLSQNPLG
Nucleotide Sequence ATGGAAAAGGGCAGTCAGTGGGAGGCAAAAGAGAGAGGGGGAACAAGGAGATGGTGCCTGTCTCAGAATCCACTTGGGTAG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab