CircRNA Information

General Information
circRNA Basic Information
CircID chr11:67398270|67398490
Strand +
CircType exon
Host Gene ENSG00000172613.6;
Algorism CIRI2;
Sequence AGAAATCATGCTGCCATGCTGGGGGGGGGTCACCCCGACCCCTCAGGCCCACCTGTCACGGGGAACATGGAGCCTTGGTGTATTTTTCTTTTCTTTTTTTAATGAATCAATAGCAGCGTCCAGTCCCCCAGGGCTGCTTCCTGCCTGCACCTGCGGTGACTGTGAGCAGGATCCTGGGGCCGAGGCTGCAGCTCAGGGCAACGGCAGGCCAGGTCGTGGGT
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr11:67398270|67398490 hsa-miR-27a-5p 0 0 1
chr11:67398270|67398490 hsa-miR-27a-3p 0 0 1
chr11:67398270|67398490 hsa-miR-107 0 0 1
chr11:67398270|67398490 hsa-miR-27b-5p 0 0 1
chr11:67398270|67398490 hsa-miR-27b-3p 0 0 1
chr11:67398270|67398490 hsa-miR-370-5p 0 0 1
chr11:67398270|67398490 hsa-miR-370-3p 0 0 1
chr11:67398270|67398490 hsa-miR-552-5p 0 0 1
chr11:67398270|67398490 hsa-miR-552-3p 0 0 1
chr11:67398270|67398490 hsa-miR-558 0 0 1
chr11:67398270|67398490 hsa-miR-625-5p 0 0 1
chr11:67398270|67398490 hsa-miR-625-3p 0 0 1
chr11:67398270|67398490 hsa-miR-631 0 1 1
chr11:67398270|67398490 hsa-miR-637 0 1 1
chr11:67398270|67398490 hsa-miR-874-5p 0 0 1
chr11:67398270|67398490 hsa-miR-874-3p 0 0 1
chr11:67398270|67398490 hsa-miR-541-5p 0 0 1
chr11:67398270|67398490 hsa-miR-541-3p 0 0 1
chr11:67398270|67398490 hsa-miR-940 0 0 1
chr11:67398270|67398490 hsa-miR-1178-5p 0 0 1
chr11:67398270|67398490 hsa-miR-1178-3p 0 0 1
chr11:67398270|67398490 hsa-miR-1275 0 1 1
chr11:67398270|67398490 hsa-miR-885-3p 0 0 1
chr11:67398270|67398490 hsa-miR-146b-3p 0 0 1
chr11:67398270|67398490 hsa-miR-1184 0 0 1
chr11:67398270|67398490 hsa-miR-423-5p 0 0 1
chr11:67398270|67398490 hsa-miR-654-5p 0 0 1
chr11:67398270|67398490 hsa-miR-361-3p 0 1 1
chr11:67398270|67398490 hsa-miR-767-3p 0 1 1
chr11:67398270|67398490 hsa-miR-338-3p 0 1 1
chr11:67398270|67398490 hsa-miR-125a-5p 0 0 1
chr11:67398270|67398490 hsa-miR-542-3p 0 0 1
chr11:67398270|67398490 hsa-miR-128 0 0 1
chr11:67398270|67398490 hsa-miR-886-5p 0 0 1
chr11:67398270|67398490 hsa-miR-125b 0 0 1
chr11:67398270|67398490 hsa-miR-103 0 0 1
chr11:67398270|67398490 hsa-miR-664 0 0 1
chr11:67398270|67398490 hsa-miR-596 1 0 0
chr11:67398270|67398490 hsa-miR-2861 0 1 0
chr11:67398270|67398490 hsa-miR-4319 0 1 0
chr11:67398270|67398490 hsa-miR-4292 0 1 0
chr11:67398270|67398490 hsa-miR-3665 0 1 0
chr11:67398270|67398490 hsa-miR-3937 1 0 0
chr11:67398270|67398490 hsa-miR-4492 1 0 0
chr11:67398270|67398490 hsa-miR-4514 0 1 0
chr11:67398270|67398490 hsa-miR-4515 0 1 0
chr11:67398270|67398490 hsa-miR-4660 0 1 0
chr11:67398270|67398490 hsa-miR-4673 1 0 0
chr11:67398270|67398490 hsa-miR-4706 1 0 0
chr11:67398270|67398490 hsa-miR-4721 1 0 0
chr11:67398270|67398490 hsa-miR-7704 0 1 0
chr11:67398270|67398490 hsa-miR-7976 0 1 0
chr11:67398270|67398490 hsa-miR-6840-3p 0 1 0
chr11:67398270|67398490 hsa-miR-671-5p 1 0 0
chr11:67398270|67398490 hsa-miR-212-5p 0 1 0
chr11:67398270|67398490 hsa-miR-7851-3p 0 1 0
chr11:67398270|67398490 hsa-miR-6806-5p 0 1 0
chr11:67398270|67398490 hsa-miR-6735-3p 1 0 0
chr11:67398270|67398490 hsa-miR-6852-5p 0 1 0
chr11:67398270|67398490 hsa-miR-4763-5p 1 1 0
chr11:67398270|67398490 hsa-miR-6749-5p 1 1 0
chr11:67398270|67398490 hsa-miR-7156-3p 0 1 0
chr11:67398270|67398490 hsa-miR-6886-5p 0 1 0
chr11:67398270|67398490 hsa-miR-4652-5p 0 1 0
chr11:67398270|67398490 hsa-miR-3605-3p 0 1 0
chr11:67398270|67398490 hsa-miR-4746-5p 1 1 0
chr11:67398270|67398490 hsa-miR-4716-5p 0 1 0
chr11:67398270|67398490 hsa-miR-4763-3p 0 1 0
chr11:67398270|67398490 hsa-miR-6756-5p 0 1 0
chr11:67398270|67398490 hsa-miR-6808-5p 0 1 0
chr11:67398270|67398490 hsa-miR-6511b-5p 0 1 0
chr11:67398270|67398490 hsa-miR-4665-5p 0 1 0
chr11:67398270|67398490 hsa-miR-6791-5p 0 1 0
chr11:67398270|67398490 hsa-miR-10392-3p 0 1 0
chr11:67398270|67398490 hsa-miR-6764-5p 0 1 0
chr11:67398270|67398490 hsa-miR-3922-3p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr11:67398270|67398490
ORF Type ORF1
Protein Length 28
Nucleotide Length 87
Protein Sequence MLGGGHPDPSGPPVTGNMEPWCIFLFFF
Nucleotide Sequence ATGCTGGGGGGGGGTCACCCCGACCCCTCAGGCCCACCTGTCACGGGGAACATGGAGCCTTGGTGTATTTTTCTTTTCTTTTTTTAA
CircID chr11:67398270|67398490
ORF Type ORF2
Protein Length 71
Nucleotide Length 213
Protein Sequence MLPCWGGVTPTPQAHLSRGTWSLGVFFFSFFNESIAASSPPGLLPACTCGDCEQDPGAEAAAQGNGRPGRG
Nucleotide Sequence ATGCTGCCATGCTGGGGGGGGGTCACCCCGACCCCTCAGGCCCACCTGTCACGGGGAACATGGAGCCTTGGTGTATTTTTCTTTTCTTTTTTTAATGAATCAATAGCAGCGTCCAGTCCCCCAGGGCTGCTTCCTGCCTGCACCTGCGGTGACTGTGAGCAGGATCCTGGGGCCGAGGCTGCAGCTCAGGGCAACGGCAGGCCAGGTCGTGGG
CircID chr11:67398270|67398490
ORF Type ORF3
Protein Length 27
Nucleotide Length 81
Protein Sequence MPAPAVTVSRILGPRLQLRATAGQVVG
Nucleotide Sequence CTGCCTGCACCTGCGGTGACTGTGAGCAGGATCCTGGGGCCGAGGCTGCAGCTCAGGGCAACGGCAGGCCAGGTCGTGGGT
CircID chr11:67398270|67398490
ORF Type ORF4
Protein Length 37
Nucleotide Length 114
Protein Sequence MACRCPELQPRPQDPAHSHRRCRQEAALGDWTLLLIH
Nucleotide Sequence CTGGCCTGCCGTTGCCCTGAGCTGCAGCCTCGGCCCCAGGATCCTGCTCACAGTCACCGCAGGTGCAGGCAGGAAGCAGCCCTGGGGGACTGGACGCTGCTATTGATTCATTAA
CircID chr11:67398270|67398490
ORF Type ORF5
Protein Length 29
Nucleotide Length 90
Protein Sequence MSCSLGPRILLTVTAGAGRKQPWGTGRCY
Nucleotide Sequence CTGAGCTGCAGCCTCGGCCCCAGGATCCTGCTCACAGTCACCGCAGGTGCAGGCAGGAAGCAGCCCTGGGGGACTGGACGCTGCTATTGA
CircID chr11:67398270|67398490
ORF Type ORF6
Protein Length 26
Nucleotide Length 81
Protein Sequence MDAAIDSLKKEKKNTPRLHVPRDRWA
Nucleotide Sequence CTGGACGCTGCTATTGATTCATTAAAAAAAGAAAAGAAAAATACACCAAGGCTCCATGTTCCCCGTGACAGGTGGGCCTGA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab