CircRNA Information

General Information
circRNA Basic Information
CircID chr11:67398418|67398588
Strand +
CircType exon
Host Gene ENSG00000172531.13;
Algorism CIRI2;
Sequence CCTGGAGGCCGACCCATCACCCCACCCCGCAATTCCGCCAAAGCCAAGAAATAGCCCCCGCACACCACCCTGTGCCCCAGATGATGGATTGATTGTACAGAAATCATGCTGCCATGCTGGGGGGGGGTCACCCCGACCCCTCAGGCCCACCTGTCACGGGGAACATGGAGC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr11:67398418|67398588 hsa-miR-107 0 0 1
chr11:67398418|67398588 hsa-miR-552-5p 0 0 1
chr11:67398418|67398588 hsa-miR-552-3p 0 0 1
chr11:67398418|67398588 hsa-miR-578 0 0 1
chr11:67398418|67398588 hsa-miR-608 1 1 1
chr11:67398418|67398588 hsa-miR-637 1 0 1
chr11:67398418|67398588 hsa-miR-541-5p 0 0 1
chr11:67398418|67398588 hsa-miR-541-3p 0 0 1
chr11:67398418|67398588 hsa-miR-147b-5p 0 0 1
chr11:67398418|67398588 hsa-miR-147b-3p 0 0 1
chr11:67398418|67398588 hsa-miR-744-5p 0 0 1
chr11:67398418|67398588 hsa-miR-744-3p 0 0 1
chr11:67398418|67398588 hsa-miR-1234-3p 0 0 1
chr11:67398418|67398588 hsa-miR-1293 0 1 1
chr11:67398418|67398588 hsa-miR-1234 0 0 1
chr11:67398418|67398588 hsa-miR-486-3p 0 0 1
chr11:67398418|67398588 hsa-miR-885-3p 1 0 1
chr11:67398418|67398588 hsa-miR-423-5p 0 0 1
chr11:67398418|67398588 hsa-miR-654-5p 0 0 1
chr11:67398418|67398588 hsa-miR-361-3p 0 1 1
chr11:67398418|67398588 hsa-miR-338-3p 0 1 1
chr11:67398418|67398588 hsa-miR-342-5p 0 0 1
chr11:67398418|67398588 hsa-miR-542-3p 0 0 1
chr11:67398418|67398588 hsa-miR-886-5p 0 0 1
chr11:67398418|67398588 hsa-miR-103 0 0 1
chr11:67398418|67398588 hsa-miR-220c 0 0 1
chr11:67398418|67398588 hsa-miR-638 1 0 0
chr11:67398418|67398588 hsa-miR-762 1 0 0
chr11:67398418|67398588 hsa-miR-760 1 0 0
chr11:67398418|67398588 hsa-miR-2861 0 1 0
chr11:67398418|67398588 hsa-miR-4447 1 0 0
chr11:67398418|67398588 hsa-miR-4466 1 0 0
chr11:67398418|67398588 hsa-miR-4488 1 0 0
chr11:67398418|67398588 hsa-miR-1587 1 0 0
chr11:67398418|67398588 hsa-miR-3960 1 0 0
chr11:67398418|67398588 hsa-miR-4651 1 1 0
chr11:67398418|67398588 hsa-miR-4706 1 0 0
chr11:67398418|67398588 hsa-miR-4741 1 0 0
chr11:67398418|67398588 hsa-miR-5572 1 0 0
chr11:67398418|67398588 hsa-miR-5787 1 0 0
chr11:67398418|67398588 hsa-miR-6745 1 0 0
chr11:67398418|67398588 hsa-miR-7704 0 1 0
chr11:67398418|67398588 hsa-miR-8089 1 0 0
chr11:67398418|67398588 hsa-miR-6747-5p 1 0 0
chr11:67398418|67398588 hsa-miR-3150a-3p 1 0 0
chr11:67398418|67398588 hsa-miR-4687-3p 1 0 0
chr11:67398418|67398588 hsa-miR-6799-5p 1 0 0
chr11:67398418|67398588 hsa-miR-8071 1 0 0
chr11:67398418|67398588 hsa-miR-1227-5p 1 0 0
chr11:67398418|67398588 hsa-miR-6727-5p 1 0 0
chr11:67398418|67398588 hsa-miR-6742-5p 1 0 0
chr11:67398418|67398588 hsa-miR-3151-5p 1 0 0
chr11:67398418|67398588 hsa-miR-6796-5p 1 0 0
chr11:67398418|67398588 hsa-miR-185-3p 1 0 0
chr11:67398418|67398588 hsa-miR-6782-5p 1 0 0
chr11:67398418|67398588 hsa-miR-6786-5p 1 0 0
chr11:67398418|67398588 hsa-miR-6763-3p 1 0 0
chr11:67398418|67398588 hsa-miR-6784-5p 1 0 0
chr11:67398418|67398588 hsa-miR-1228-5p 1 0 0
chr11:67398418|67398588 hsa-miR-6823-5p 1 0 0
chr11:67398418|67398588 hsa-miR-6749-5p 1 1 0
chr11:67398418|67398588 hsa-miR-4787-5p 1 0 0
chr11:67398418|67398588 hsa-miR-664b-5p 1 0 0
chr11:67398418|67398588 hsa-miR-3605-3p 0 1 0
chr11:67398418|67398588 hsa-miR-7151-5p 0 1 0
chr11:67398418|67398588 hsa-miR-1298-3p 0 1 0
chr11:67398418|67398588 hsa-miR-4716-5p 1 1 0
chr11:67398418|67398588 hsa-miR-4763-3p 1 0 0
chr11:67398418|67398588 hsa-miR-6769b-5p 1 0 0
chr11:67398418|67398588 hsa-miR-6787-5p 1 0 0
chr11:67398418|67398588 hsa-miR-6812-5p 1 1 0
chr11:67398418|67398588 hsa-miR-6816-5p 1 0 0
chr11:67398418|67398588 hsa-miR-6737-5p 1 1 0
chr11:67398418|67398588 hsa-miR-6752-5p 1 0 0
chr11:67398418|67398588 hsa-miR-6756-5p 1 1 0
chr11:67398418|67398588 hsa-miR-6769a-5p 1 0 0
chr11:67398418|67398588 hsa-miR-6819-5p 1 1 0
chr11:67398418|67398588 hsa-miR-10401-5p 1 0 0
chr11:67398418|67398588 hsa-miR-3620-5p 1 0 0
chr11:67398418|67398588 hsa-miR-10396a-5p 1 0 0
chr11:67398418|67398588 hsa-miR-1237-5p 1 0 0
chr11:67398418|67398588 hsa-miR-328-5p 1 0 0
chr11:67398418|67398588 hsa-miR-4632-5p 1 0 0
chr11:67398418|67398588 hsa-miR-4701-3p 1 0 0
chr11:67398418|67398588 hsa-miR-4745-5p 1 0 0
chr11:67398418|67398588 hsa-miR-6846-5p 1 0 0
chr11:67398418|67398588 hsa-miR-6848-5p 1 0 0
chr11:67398418|67398588 hsa-miR-3940-5p 1 0 0
chr11:67398418|67398588 hsa-miR-4700-5p 1 0 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr11:67398418|67398588
ORF Type ORF1
Protein Length 56
Nucleotide Length 168
Protein Sequence LEADPSPHPAIPPKPRNSPRTPPCAPDDGLIVQKSCCHAGGGSPRPLRPTCHGEHG
Nucleotide Sequence CTGGAGGCCGACCCATCACCCCACCCCGCAATTCCGCCAAAGCCAAGAAATAGCCCCCGCACACCACCCTGTGCCCCAGATGATGGATTGATTGTACAGAAATCATGCTGCCATGCTGGGGGGGGGTCACCCCGACCCCTCAGGCCCACCTGTCACGGGGAACATGGA
CircID chr11:67398418|67398588
ORF Type ORF2
Protein Length 26
Nucleotide Length 78
Protein Sequence MYRNHAAMLGGGHPDPSGPPVTGNME
Nucleotide Sequence TTGTACAGAAATCATGCTGCCATGCTGGGGGGGGGTCACCCCGACCCCTCAGGCCCACCTGTCACGGGGAACATGGAG
CircID chr11:67398418|67398588
ORF Type ORF3
Protein Length 48
Nucleotide Length 144
Protein Sequence MRGRGDPPPAWQHDFCTINPSSGAQGGVRGLFLGFGGIAGWGDGSASR
Nucleotide Sequence CTGAGGGGTCGGGGTGACCCCCCCCCAGCATGGCAGCATGATTTCTGTACAATCAATCCATCATCTGGGGCACAGGGTGGTGTGCGGGGGCTATTTCTTGGCTTTGGCGGAATTGCGGGGTGGGGTGATGGGTCGGCCTCCAGG
CircID chr11:67398418|67398588
ORF Type ORF4
Protein Length 35
Nucleotide Length 105
Protein Sequence MISVQSIHHLGHRVVCGGYFLALAELRGGVMGRPP
Nucleotide Sequence ATGATTTCTGTACAATCAATCCATCATCTGGGGCACAGGGTGGTGTGCGGGGGCTATTTCTTGGCTTTGGCGGAATTGCGGGGTGGGGTGATGGGTCGGCCTCCA
CircID chr11:67398418|67398588
ORF Type ORF5
Protein Length 27
Nucleotide Length 84
Protein Sequence MYNQSIIWGTGWCAGAISWLWRNCGVG
Nucleotide Sequence CTGTACAATCAATCCATCATCTGGGGCACAGGGTGGTGTGCGGGGGCTATTTCTTGGCTTTGGCGGAATTGCGGGGTGGGGTGA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab