CircRNA Information

General Information
circRNA Basic Information
CircID chr11:67400769|67401086
Strand -
CircType exon
Host Gene ENSG00000172531.13;
Algorism CIRI2;
Sequence TTGATCTTATAGGCCAGCAGCAGGCAGATGGTCTCCAAGGACTGCTTGCCCCTGTCCACATAGTCCCCCAGAAAGAGGTAGTTGCTCTCGGGAGGGAAACCGCCATACTCAAATAGTCGCAGAAGGTCGTAGTACTGGCCGTGTATGTCACCGCAGATCTTGAGGGGTGC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr11:67400769|67401086 hsa-miR-370-5p 0 0 1
chr11:67400769|67401086 hsa-miR-370-3p 0 0 1
chr11:67400769|67401086 hsa-miR-432-5p 0 0 1
chr11:67400769|67401086 hsa-miR-432-3p 0 0 1
chr11:67400769|67401086 hsa-miR-496 0 0 1
chr11:67400769|67401086 hsa-miR-602 1 0 1
chr11:67400769|67401086 hsa-miR-620 0 0 1
chr11:67400769|67401086 hsa-miR-625-5p 0 0 1
chr11:67400769|67401086 hsa-miR-625-3p 0 0 1
chr11:67400769|67401086 hsa-miR-637 1 0 1
chr11:67400769|67401086 hsa-miR-652-5p 0 0 1
chr11:67400769|67401086 hsa-miR-652-3p 0 0 1
chr11:67400769|67401086 hsa-miR-1237-5p 0 0 1
chr11:67400769|67401086 hsa-miR-1237-3p 0 0 1
chr11:67400769|67401086 hsa-miR-1270 0 0 1
chr11:67400769|67401086 hsa-miR-1275 0 0 1
chr11:67400769|67401086 hsa-miR-770-5p 0 1 1
chr11:67400769|67401086 hsa-miR-299-3p 0 0 1
chr11:67400769|67401086 hsa-miR-642 0 0 1
chr11:67400769|67401086 hsa-miR-346 0 1 0
chr11:67400769|67401086 hsa-miR-646 1 1 0
chr11:67400769|67401086 hsa-miR-3138 0 1 0
chr11:67400769|67401086 hsa-miR-4523 1 0 0
chr11:67400769|67401086 hsa-miR-4688 0 1 0
chr11:67400769|67401086 hsa-miR-4734 1 0 0
chr11:67400769|67401086 hsa-miR-8089 1 0 0
chr11:67400769|67401086 hsa-miR-3692-5p 0 1 0
chr11:67400769|67401086 hsa-miR-6727-5p 1 0 0
chr11:67400769|67401086 hsa-miR-6721-5p 1 0 0
chr11:67400769|67401086 hsa-miR-6798-5p 1 0 0
chr11:67400769|67401086 hsa-miR-3156-5p 0 1 0
chr11:67400769|67401086 hsa-miR-7109-5p 1 0 0
chr11:67400769|67401086 hsa-miR-5001-3p 0 1 0
chr11:67400769|67401086 hsa-miR-3191-3p 1 0 0
chr11:67400769|67401086 hsa-miR-4652-5p 0 1 0
chr11:67400769|67401086 hsa-miR-3619-3p 1 1 0
chr11:67400769|67401086 hsa-miR-4746-3p 1 0 0
chr11:67400769|67401086 hsa-miR-6759-3p 1 0 0
chr11:67400769|67401086 hsa-miR-6502-3p 0 1 0
chr11:67400769|67401086 hsa-miR-4740-3p 0 1 0
chr11:67400769|67401086 hsa-miR-4763-3p 1 0 0
chr11:67400769|67401086 hsa-miR-6870-5p 1 0 0
chr11:67400769|67401086 hsa-miR-6803-5p 1 0 0
chr11:67400769|67401086 hsa-miR-7111-5p 1 0 0
chr11:67400769|67401086 hsa-miR-328-5p 1 0 0
chr11:67400769|67401086 hsa-miR-4745-5p 1 0 0
chr11:67400769|67401086 hsa-miR-4749-5p 1 0 0
chr11:67400769|67401086 hsa-miR-6794-5p 1 0 0
chr11:67400769|67401086 hsa-miR-6795-5p 1 0 0
chr11:67400769|67401086 hsa-miR-6846-5p 1 0 0
chr11:67400769|67401086 hsa-miR-6848-5p 1 0 0
chr11:67400769|67401086 hsa-miR-6887-5p 1 0 0
chr11:67400769|67401086 hsa-miR-6885-5p 1 0 0
chr11:67400769|67401086 hsa-miR-939-5p 1 0 0
chr11:67400769|67401086 hsa-miR-365b-5p 1 0 0
chr11:67400769|67401086 hsa-miR-4665-5p 1 1 0
chr11:67400769|67401086 hsa-miR-6849-5p 1 0 0
chr11:67400769|67401086 hsa-miR-33b-3p 1 0 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr11:67400769|67401086
ORF Type ORF1
Protein Length 40
Nucleotide Length 120
Protein Sequence MRLFEYGGFPPESNYLFLGDYVDRGKQSLETICLLLAYKI
Nucleotide Sequence CTGCGACTATTTGAGTATGGCGGTTTCCCTCCCGAGAGCAACTACCTCTTTCTGGGGGACTATGTGGACAGGGGCAAGCAGTCCTTGGAGACCATCTGCCTGCTGCTGGCCTATAAGATC
CircID chr11:67400769|67401086
ORF Type ORF2
Protein Length 37
Nucleotide Length 111
Protein Sequence MSMAVSLPRATTSFWGTMWTGASSPWRPSACCWPIRS
Nucleotide Sequence TTGAGTATGGCGGTTTCCCTCCCGAGAGCAACTACCTCTTTCTGGGGGACTATGTGGACAGGGGCAAGCAGTCCTTGGAGACCATCTGCCTGCTGCTGGCCTATAAGATCA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab