CircRNA Information

General Information
circRNA Basic Information
CircID chr11:67435727|67435905
Strand -
CircType exon
Host Gene ENSG00000213402.2;
Algorism CIRI2;
Sequence CGGCCTCTACAGTGCGGTGACATGGAGGCCCTGGCCCCCAGCTGCCCTGGCGCTGTCATCCCAGGCTGCGCTGCCAGCAAAGGCGTGCAGGTCACTCAGCAGGGCCTCAGCACTGCCCCCTGCGCTCGCTGGTCCTGGGGAGCCGAGGACCAGGTCGCCCTCCGTGTCACTGTCTCTGG
circRNA Expression in different cancers

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circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr11:67435727|67435905 hsa-miR-34a-5p 0 0 1
chr11:67435727|67435905 hsa-miR-34a-3p 0 0 1
chr11:67435727|67435905 hsa-miR-370-5p 0 0 1
chr11:67435727|67435905 hsa-miR-370-3p 0 0 1
chr11:67435727|67435905 hsa-miR-449a 0 0 1
chr11:67435727|67435905 hsa-miR-631 0 1 1
chr11:67435727|67435905 hsa-miR-637 1 1 1
chr11:67435727|67435905 hsa-miR-661 0 1 1
chr11:67435727|67435905 hsa-miR-449b-5p 0 0 1
chr11:67435727|67435905 hsa-miR-449b-3p 0 0 1
chr11:67435727|67435905 hsa-miR-1183 0 0 1
chr11:67435727|67435905 hsa-miR-1291 0 1 1
chr11:67435727|67435905 hsa-miR-512-3p 0 1 1
chr11:67435727|67435905 hsa-miR-486-3p 0 0 1
chr11:67435727|67435905 hsa-miR-885-3p 0 0 1
chr11:67435727|67435905 hsa-miR-1207-3p 0 0 1
chr11:67435727|67435905 hsa-miR-34c-5p 0 1 1
chr11:67435727|67435905 hsa-miR-638 1 0 0
chr11:67435727|67435905 hsa-miR-658 1 0 0
chr11:67435727|67435905 hsa-miR-762 1 0 0
chr11:67435727|67435905 hsa-miR-3142 0 1 0
chr11:67435727|67435905 hsa-miR-4298 1 0 0
chr11:67435727|67435905 hsa-miR-3661 0 1 0
chr11:67435727|67435905 hsa-miR-3916 1 0 0
chr11:67435727|67435905 hsa-miR-3937 1 0 0
chr11:67435727|67435905 hsa-miR-4462 1 1 0
chr11:67435727|67435905 hsa-miR-4479 1 0 0
chr11:67435727|67435905 hsa-miR-4488 1 0 0
chr11:67435727|67435905 hsa-miR-4512 0 1 0
chr11:67435727|67435905 hsa-miR-4688 1 1 0
chr11:67435727|67435905 hsa-miR-4706 1 0 0
chr11:67435727|67435905 hsa-miR-4767 1 0 0
chr11:67435727|67435905 hsa-miR-5090 0 1 0
chr11:67435727|67435905 hsa-miR-5739 1 0 0
chr11:67435727|67435905 hsa-miR-6081 1 0 0
chr11:67435727|67435905 hsa-miR-6132 1 0 0
chr11:67435727|67435905 hsa-miR-8077 0 1 0
chr11:67435727|67435905 hsa-miR-12115 1 0 0
chr11:67435727|67435905 hsa-miR-211-3p 1 0 0
chr11:67435727|67435905 hsa-miR-432-3p 1 0 0
chr11:67435727|67435905 hsa-miR-93-3p 0 1 0
chr11:67435727|67435905 hsa-miR-4731-5p 0 1 0
chr11:67435727|67435905 hsa-miR-6840-3p 1 1 0
chr11:67435727|67435905 hsa-miR-6728-5p 1 1 0
chr11:67435727|67435905 hsa-miR-6089 1 0 0
chr11:67435727|67435905 hsa-miR-6744-5p 0 1 0
chr11:67435727|67435905 hsa-miR-7160-5p 1 1 0
chr11:67435727|67435905 hsa-miR-7845-5p 1 0 0
chr11:67435727|67435905 hsa-miR-3180-3p 1 0 0
chr11:67435727|67435905 hsa-miR-6805-5p 1 1 0
chr11:67435727|67435905 hsa-miR-6798-5p 0 1 0
chr11:67435727|67435905 hsa-miR-5008-5p 0 1 0
chr11:67435727|67435905 hsa-miR-5006-5p 0 1 0
chr11:67435727|67435905 hsa-miR-939-3p 1 1 0
chr11:67435727|67435905 hsa-miR-2277-3p 1 1 0
chr11:67435727|67435905 hsa-miR-4640-5p 1 1 0
chr11:67435727|67435905 hsa-miR-4756-3p 1 0 0
chr11:67435727|67435905 hsa-miR-4787-5p 1 0 0
chr11:67435727|67435905 hsa-miR-4638-5p 0 1 0
chr11:67435727|67435905 hsa-miR-1910-5p 1 0 0
chr11:67435727|67435905 hsa-miR-106b-3p 0 1 0
chr11:67435727|67435905 hsa-miR-4746-3p 1 0 0
chr11:67435727|67435905 hsa-miR-3605-3p 0 1 0
chr11:67435727|67435905 hsa-miR-6501-3p 0 1 0
chr11:67435727|67435905 hsa-miR-4649-3p 0 1 0
chr11:67435727|67435905 hsa-miR-2277-5p 1 0 0
chr11:67435727|67435905 hsa-miR-6767-5p 1 0 0
chr11:67435727|67435905 hsa-miR-10400-5p 1 0 0
chr11:67435727|67435905 hsa-miR-4763-3p 1 1 0
chr11:67435727|67435905 hsa-miR-6787-5p 1 0 0
chr11:67435727|67435905 hsa-miR-6812-5p 1 0 0
chr11:67435727|67435905 hsa-miR-6816-5p 1 0 0
chr11:67435727|67435905 hsa-miR-6775-5p 1 1 0
chr11:67435727|67435905 hsa-miR-6743-5p 1 0 0
chr11:67435727|67435905 hsa-miR-6819-5p 1 1 0
chr11:67435727|67435905 hsa-miR-6722-3p 1 1 0
chr11:67435727|67435905 hsa-miR-1237-5p 1 1 0
chr11:67435727|67435905 hsa-miR-1909-3p 0 1 0
chr11:67435727|67435905 hsa-miR-328-5p 1 0 0
chr11:67435727|67435905 hsa-miR-449c-5p 1 0 0
chr11:67435727|67435905 hsa-miR-4632-5p 1 1 0
chr11:67435727|67435905 hsa-miR-4685-5p 1 1 0
chr11:67435727|67435905 hsa-miR-6735-5p 0 1 0
chr11:67435727|67435905 hsa-miR-6848-5p 1 1 0
chr11:67435727|67435905 hsa-miR-6845-5p 0 1 0
chr11:67435727|67435905 hsa-miR-6799-3p 0 1 0
chr11:67435727|67435905 hsa-miR-4646-5p 1 0 0
chr11:67435727|67435905 hsa-miR-6762-5p 0 1 0
chr11:67435727|67435905 hsa-miR-6893-3p 0 1 0
chr11:67435727|67435905 hsa-miR-9851-5p 1 1 0
chr11:67435727|67435905 hsa-miR-6837-5p 0 1 0
chr11:67435727|67435905 hsa-miR-619-5p 0 1 0
chr11:67435727|67435905 hsa-miR-6506-5p 0 1 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr11:67435727|67435905
ORF Type ORF1
Protein Length 52
Nucleotide Length 156
Protein Sequence MEALAPSCPGAVIPGCAASKGVQVTQQGLSTAPCARWSWGAEDQVALRVTVS
Nucleotide Sequence ATGGAGGCCCTGGCCCCCAGCTGCCCTGGCGCTGTCATCCCAGGCTGCGCTGCCAGCAAAGGCGTGCAGGTCACTCAGCAGGGCCTCAGCACTGCCCCCTGCGCTCGCTGGTCCTGGGGAGCCGAGGACCAGGTCGCCCTCCGTGTCACTGTCTCT
CircID chr11:67435727|67435905
ORF Type ORF2
Protein Length 44
Nucleotide Length 132
Protein Sequence MALSSQAALPAKACRSLSRASALPPALAGPGEPRTRSPSVSLSL
Nucleotide Sequence CTGGCGCTGTCATCCCAGGCTGCGCTGCCAGCAAAGGCGTGCAGGTCACTCAGCAGGGCCTCAGCACTGCCCCCTGCGCTCGCTGGTCCTGGGGAGCCGAGGACCAGGTCGCCCTCCGTGTCACTGTCTCTG
CircID chr11:67435727|67435905
ORF Type ORF3
Protein Length 46
Nucleotide Length 138
Protein Sequence MPWRCHPRLRCQQRRAGHSAGPQHCPLRSLVLGSRGPGRPPCHCLW
Nucleotide Sequence CTGCCCTGGCGCTGTCATCCCAGGCTGCGCTGCCAGCAAAGGCGTGCAGGTCACTCAGCAGGGCCTCAGCACTGCCCCCTGCGCTCGCTGGTCCTGGGGAGCCGAGGACCAGGTCGCCCTCCGTGTCACTGTCTCTGG
CircID chr11:67435727|67435905
ORF Type ORF4
Protein Length 26
Nucleotide Length 78
Protein Sequence MLAAQPGMTAPGQLGARASMSPHCRG
Nucleotide Sequence TTGCTGGCAGCGCAGCCTGGGATGACAGCGCCAGGGCAGCTGGGGGCCAGGGCCTCCATGTCACCGCACTGTAGAGGC
CircID chr11:67435727|67435905
ORF Type ORF5
Protein Length 48
Nucleotide Length 147
Protein Sequence MVLGSPGPASAGGSAEALLSDLHAFAGSAAWDDSARAAGGQGLHVTAL
Nucleotide Sequence CTGGTCCTCGGCTCCCCAGGACCAGCGAGCGCAGGGGGCAGTGCTGAGGCCCTGCTGAGTGACCTGCACGCCTTTGCTGGCAGCGCAGCCTGGGATGACAGCGCCAGGGCAGCTGGGGGCCAGGGCCTCCATGTCACCGCACTGTAG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab