CircRNA Information

General Information
circRNA Basic Information
CircID chr11:69643031|69643991
Strand +
CircType exon
Host Gene ENSG00000110092.3;
Algorism find_circ;CIRI2;DCC;
Sequence GTCTGCGAGGAACAGAAGTGCGAGGAGGAGGTCTTCCCGCTGGCCATGAACTACCTGGACCGCTTCCTGTCGCTGGAGCCCGTGAAAAAGAGCCGCCTGCAGCTGCTGGGGGCCACTTGCATGTTCGTGGCCTCTAAGATGAAGGAGACCATCCCCCTGACGGCCGAGAAGCTGTGCATCTACACCGACAACTCCATCCGGCCCGAGGAGCTGCTGGTAACCACTGGACCCCGCCGCCCCCCGCCCCCCGCGAGCCGCACGCAGGACCACGGGGCCGGGGAAGGTGCCGCAGGGGCCAGTGCTCTGAGCCGGAGGTGCGGCGTGGCCCGGCCCCCGTGCTGCCGGCTTCCCCGCGCCCCCGGGCTGGCCCGCACCTCCCCTGATGGCCGCTCACCCTGTGTTCGCAGCAAATGGAGCTGCTCCTGGTGAACAAGCTCAAGTGGAACCTGGCCGCAATGACCCCGCACGATTTCATTGAACACTTCCTCTCCAAAATGCCAGAGGCGGAGGAGAACAAACAGATCATCCGCAAACACGCGCAGACCTTCGTTGCCCTCTGTGCCACAG
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr11:69643031|69643991 hsa-miR-346 1 1 1
chr11:69643031|69643991 hsa-miR-3178 1 1 1
chr11:69643031|69643991 hsa-miR-3937 1 1 1
chr11:69643031|69643991 hsa-miR-4467 1 1 1
chr11:69643031|69643991 hsa-miR-4479 1 1 1
chr11:69643031|69643991 hsa-miR-4634 1 1 1
chr11:69643031|69643991 hsa-miR-4721 1 1 1
chr11:69643031|69643991 hsa-miR-4734 1 1 1
chr11:69643031|69643991 hsa-miR-4754 1 1 1
chr11:69643031|69643991 hsa-miR-4767 1 1 1
chr11:69643031|69643991 hsa-miR-6081 1 1 1
chr11:69643031|69643991 hsa-miR-7704 1 1 1
chr11:69643031|69643991 hsa-miR-4532 1 1 1
chr11:69643031|69643991 hsa-miR-671-5p 1 1 1
chr11:69643031|69643991 hsa-miR-6825-5p 1 1 1
chr11:69643031|69643991 hsa-miR-136-5p 1 1 1
chr11:69643031|69643991 hsa-miR-210-5p 1 1 1
chr11:69643031|69643991 hsa-miR-6089 1 1 1
chr11:69643031|69643991 hsa-miR-3677-5p 1 1 1
chr11:69643031|69643991 hsa-miR-593-5p 1 1 1
chr11:69643031|69643991 hsa-miR-4459 1 1 1
chr11:69643031|69643991 hsa-miR-7108-5p 1 1 1
chr11:69643031|69643991 hsa-miR-3180-3p 1 1 1
chr11:69643031|69643991 hsa-miR-6732-5p 1 1 1
chr11:69643031|69643991 hsa-miR-6805-5p 1 1 1
chr11:69643031|69643991 hsa-miR-6798-5p 1 1 1
chr11:69643031|69643991 hsa-miR-6821-5p 1 1 1
chr11:69643031|69643991 hsa-miR-3944-3p 1 1 1
chr11:69643031|69643991 hsa-miR-4640-5p 1 1 1
chr11:69643031|69643991 hsa-miR-885-3p 1 1 1
chr11:69643031|69643991 hsa-miR-1908-5p 1 1 1
chr11:69643031|69643991 hsa-miR-6749-5p 1 1 1
chr11:69643031|69643991 hsa-miR-4743-5p 1 1 1
chr11:69643031|69643991 hsa-miR-4787-5p 1 1 1
chr11:69643031|69643991 hsa-miR-6781-5p 1 1 1
chr11:69643031|69643991 hsa-miR-6877-5p 1 1 1
chr11:69643031|69643991 hsa-miR-5010-5p 1 1 1
chr11:69643031|69643991 hsa-miR-4707-5p 1 1 1
chr11:69643031|69643991 hsa-miR-744-5p 1 1 1
chr11:69643031|69643991 hsa-miR-4750-5p 1 1 1
chr11:69643031|69643991 hsa-miR-2277-5p 1 1 1
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr11:69643031|69643991
ORF Type ORF1
Protein Length 131
Nucleotide Length 393
Protein Sequence MICLFSSASGILERKCSMKSCGVIAARFHLSLFTRSSSICCEHRVSGHQGRCGPARGRGEAGSTGAGPRRTSGSEHWPLRHLPRPRGPACGSRGAGGGGVQWLPAAPRAGWSCRCRCTASRPSGGWSPSS*
Nucleotide Sequence ATGATCTGTTTGTTCTCCTCCGCCTCTGGCATTTTGGAGAGGAAGTGTTCAATGAAATCGTGCGGGGTCATTGCGGCCAGGTTCCACTTGAGCTTGTTCACCAGGAGCAGCTCCATTTGCTGCGAACACAGGGTGAGCGGCCATCAGGGGAGGTGCGGGCCAGCCCGGGGGCGCGGGGAAGCCGGCAGCACGGGGGCCGGGCCACGCCGCACCTCCGGCTCAGAGCACTGGCCCCTGCGGCACCTTCCCCGGCCCCGTGGTCCTGCGTGCGGCTCGCGGGGGGCGGGGGGCGGCGGGGTCCAGTGGTTACCAGCAGCTCCTCGGGCCGGATGGAGTTGTCGGTGTAGATGCACAGCTTCTCGGCCGTCAGGGGGATGGTCTCCTTCATCTTAG
CircID chr11:69643031|69643991
ORF Type ORF2
Protein Length 128
Nucleotide Length 384
Protein Sequence MNYLDRFLSLEPVKKSRLQLLGATCMFVASKMKETIPLTAEKLCIYTDNSIRPEELLVTTGPRRPPPPASRTQDHGAGEGAAGASALSRRCGVARPPCCRLPRAPGLARTSPDGRSPCVRSKWSCSW*
Nucleotide Sequence ATGAACTACCTGGACCGCTTCCTGTCGCTGGAGCCCGTGAAAAAGAGCCGCCTGCAGCTGCTGGGGGCCACTTGCATGTTCGTGGCCTCTAAGATGAAGGAGACCATCCCCCTGACGGCCGAGAAGCTGTGCATCTACACCGACAACTCCATCCGGCCCGAGGAGCTGCTGGTAACCACTGGACCCCGCCGCCCCCCGCCCCCCGCGAGCCGCACGCAGGACCACGGGGCCGGGGAAGGTGCCGCAGGGGCCAGTGCTCTGAGCCGGAGGTGCGGCGTGGCCCGGCCCCCGTGCTGCCGGCTTCCCCGCGCCCCCGGGCTGGCCCGCACCTCCCCTGATGGCCGCTCACCCTGTGTTCGCAGCAAATGGAGCTGCTCCTGGTGA
CircID chr11:69643031|69643991
ORF Type ORF3
Protein Length 119
Nucleotide Length 357
Protein Sequence VFADDLFVLLRLWHFGEEVFNEIVRGHCGQVPLELVHQEQLHLLRTQGERPSGEVRASPGARGSRQHGGRATPHLRLRALAPAAPSPAPWSCVRLAGGGGRRGPVVTSSSSGRMELSV*
Nucleotide Sequence GTGTTTGCGGATGATCTGTTTGTTCTCCTCCGCCTCTGGCATTTTGGAGAGGAAGTGTTCAATGAAATCGTGCGGGGTCATTGCGGCCAGGTTCCACTTGAGCTTGTTCACCAGGAGCAGCTCCATTTGCTGCGAACACAGGGTGAGCGGCCATCAGGGGAGGTGCGGGCCAGCCCGGGGGCGCGGGGAAGCCGGCAGCACGGGGGCCGGGCCACGCCGCACCTCCGGCTCAGAGCACTGGCCCCTGCGGCACCTTCCCCGGCCCCGTGGTCCTGCGTGCGGCTCGCGGGGGGCGGGGGGCGGCGGGGTCCAGTGGTTACCAGCAGCTCCTCGGGCCGGATGGAGTTGTCGGTGTAG
CircID chr11:69643031|69643991
ORF Type ORF4
Protein Length 52
Nucleotide Length 156
Protein Sequence MELLLVNKLKWNLAAMTPHDFIEHFLSKMPEAEENKQIIRKHAQTFVALCAT
Nucleotide Sequence ATGGAGCTGCTCCTGGTGAACAAGCTCAAGTGGAACCTGGCCGCAATGACCCCGCACGATTTCATTGAACACTTCCTCTCCAAAATGCCAGAGGCGGAGGAGAACAAACAGATCATCCGCAAACACGCGCAGACCTTCGTTGCCCTCTGTGCCACA
CircID chr11:69643031|69643991
ORF Type ORF5
Protein Length 43
Nucleotide Length 129
Protein Sequence MHSFSAVRGMVSFILEATNMQVAPSSCRRLFFTGSSDRKRSR*
Nucleotide Sequence ATGCACAGCTTCTCGGCCGTCAGGGGGATGGTCTCCTTCATCTTAGAGGCCACGAACATGCAAGTGGCCCCCAGCAGCTGCAGGCGGCTCTTTTTCACGGGCTCCAGCGACAGGAAGCGGTCCAGGTAG
CircID chr11:69643031|69643991
ORF Type ORF6
Protein Length 90
Nucleotide Length 270
Protein Sequence VVLRAARGGRGAAGSSGYQQLLGPDGVVGVDAQLLGRQGDGLLHLRGHEHASGPQQLQAALFHGLQRQEAVQVVHGQREDLLLALLFLAD
Nucleotide Sequence GTGGTCCTGCGTGCGGCTCGCGGGGGGCGGGGGGCGGCGGGGTCCAGTGGTTACCAGCAGCTCCTCGGGCCGGATGGAGTTGTCGGTGTAGATGCACAGCTTCTCGGCCGTCAGGGGGATGGTCTCCTTCATCTTAGAGGCCACGAACATGCAAGTGGCCCCCAGCAGCTGCAGGCGGCTCTTTTTCACGGGCTCCAGCGACAGGAAGCGGTCCAGGTAGTTCATGGCCAGCGGGAAGACCTCCTCCTCGCACTTCTGTTCCTCGCAGAC
CircID chr11:69643031|69643991
ORF Type ORF7
Protein Length 32
Nucleotide Length 96
Protein Sequence MAAHPVFAANGAAPGEQAQVEPGRNDPARFH*
Nucleotide Sequence ATGGCCGCTCACCCTGTGTTCGCAGCAAATGGAGCTGCTCCTGGTGAACAAGCTCAAGTGGAACCTGGCCGCAATGACCCCGCACGATTTCATTGA
CircID chr11:69643031|69643991
ORF Type ORF8
Protein Length 70
Nucleotide Length 210
Protein Sequence VHLHRQLHPARGAAGNHWTPPPPAPREPHAGPRGRGRCRRGQCSEPEVRRGPAPVLPASPRPRAGPHLP*
Nucleotide Sequence GTGCATCTACACCGACAACTCCATCCGGCCCGAGGAGCTGCTGGTAACCACTGGACCCCGCCGCCCCCCGCCCCCCGCGAGCCGCACGCAGGACCACGGGGCCGGGGAAGGTGCCGCAGGGGCCAGTGCTCTGAGCCGGAGGTGCGGCGTGGCCCGGCCCCCGTGCTGCCGGCTTCCCCGCGCCCCCGGGCTGGCCCGCACCTCCCCTGA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
chr11:69643031|69643991 FUS 1 0 1
chr11:69643031|69643991 SF3B4 2 0 2
chr11:69643031|69643991 FAM120A 3 0 0
chr11:69643031|69643991 FKBP4 0 1 0
chr11:69643031|69643991 PRPF8 4 3 3
chr11:69643031|69643991 UPF1 3 0 1
chr11:69643031|69643991 TROVE2 0 0 1
chr11:69643031|69643991 ELAVL1 1 0 4
chr11:69643031|69643991 GNL3 0 1 0
chr11:69643031|69643991 DGCR8 1 0 0
chr11:69643031|69643991 SRSF7 0 0 2
chr11:69643031|69643991 SRSF1 3 1 4
chr11:69643031|69643991 NOP58 0 0 3
chr11:69643031|69643991 NONO 1 0 0
chr11:69643031|69643991 U2AF2 3 3 0
chr11:69643031|69643991 SRSF9 0 1 3
chr11:69643031|69643991 HNRNPU 1 0 0
chr11:69643031|69643991 DDX54 5 15 10
chr11:69643031|69643991 LSM11 1 0 0
chr11:69643031|69643991 RBM10 0 2 0
chr11:69643031|69643991 PCBP2 3 0 0
chr11:69643031|69643991 HNRNPA2B1 1 0 2
chr11:69643031|69643991 SF3A3 0 0 2
chr11:69643031|69643991 HNRNPC 9 0 0
chr11:69643031|69643991 TRA2A 1 0 1
chr11:69643031|69643991 HNRNPM 1 2 0
chr11:69643031|69643991 SMNDC1 0 1 0
chr11:69643031|69643991 MSI1 0 2 0
chr11:69643031|69643991 ACIN1 1 0 1
chr11:69643031|69643991 FXR1 1 0 0
chr11:69643031|69643991 BCCIP 3 0 0
chr11:69643031|69643991 SND1 1 0 1
chr11:69643031|69643991 GTF2F1 5 0 0
chr11:69643031|69643991 IGF2BP2 0 4 4
chr11:69643031|69643991 YTHDC1 0 0 2
chr11:69643031|69643991 BUD13 2 1 3
chr11:69643031|69643991 RBFOX2 5 1 0
chr11:69643031|69643991 RBM47 0 0 2
chr11:69643031|69643991 SLTM 5 5 0
chr11:69643031|69643991 EIF4G2 1 1 1
chr11:69643031|69643991 DDX42 0 1 1
chr11:69643031|69643991 CSTF2T 3 6 2
chr11:69643031|69643991 TIA1 1 0 0
chr11:69643031|69643991 RBM27 1 1 0
chr11:69643031|69643991 XRN2 1 1 0
chr11:69643031|69643991 HNRNPK 0 7 0
chr11:69643031|69643991 AGO2 1 0 1
chr11:69643031|69643991 EIF4A3 9 4 5
chr11:69643031|69643991 FBL 0 2 3
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab