CircRNA Information

General Information
circRNA Basic Information
CircID chr11:703491|703719
Strand +
CircType exon
Host Gene ENSG00000177042.13;
Algorism CIRI2;
Sequence CCAGAGTCCACTCTTGCACCGGGCCTGCCTGCCTGTGAGGCAGAGCTGGGGTTGCTCAGAGCACAAGGCCTACCCCATCCTGCGTCTCCAGCCCGACTTGGAAACACAGGTGGGGCCTGGCCACGGAGTAAACTGGGATCTCAGAACACAAATTAGGACCATTGGGGAACTAGGGGGTGATGGGGGATGCAGTGAGATGAGGCCTCTGTTCTGAAGGGCTCTGTCCTCC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr11:703491|703719 hsa-miR-217-5p 0 0 1
chr11:703491|703719 hsa-miR-217-3p 0 0 1
chr11:703491|703719 hsa-miR-599 0 0 1
chr11:703491|703719 hsa-miR-940 0 1 1
chr11:703491|703719 hsa-miR-1204 0 1 1
chr11:703491|703719 hsa-miR-139-3p 1 1 1
chr11:703491|703719 hsa-miR-324-5p 1 1 1
chr11:703491|703719 hsa-miR-361-3p 0 0 1
chr11:703491|703719 hsa-miR-1224-3p 0 0 1
chr11:703491|703719 hsa-miR-513a-5p 0 1 1
chr11:703491|703719 hsa-miR-1233 0 0 1
chr11:703491|703719 hsa-miR-220c 0 0 1
chr11:703491|703719 hsa-miR-218 0 0 1
chr11:703491|703719 hsa-miR-129-3p 0 0 1
chr11:703491|703719 hsa-miR-608 1 0 0
chr11:703491|703719 hsa-miR-638 1 0 0
chr11:703491|703719 hsa-miR-649 0 1 0
chr11:703491|703719 hsa-miR-762 1 1 0
chr11:703491|703719 hsa-miR-663b 1 0 0
chr11:703491|703719 hsa-miR-3142 0 1 0
chr11:703491|703719 hsa-miR-3197 1 1 0
chr11:703491|703719 hsa-miR-4313 1 0 0
chr11:703491|703719 hsa-miR-4329 1 0 0
chr11:703491|703719 hsa-miR-3652 0 1 0
chr11:703491|703719 hsa-miR-3921 0 1 0
chr11:703491|703719 hsa-miR-4430 0 1 0
chr11:703491|703719 hsa-miR-4492 0 1 0
chr11:703491|703719 hsa-miR-4498 1 1 0
chr11:703491|703719 hsa-miR-2392 0 1 0
chr11:703491|703719 hsa-miR-4512 1 0 0
chr11:703491|703719 hsa-miR-4514 0 1 0
chr11:703491|703719 hsa-miR-4656 1 0 0
chr11:703491|703719 hsa-miR-4682 1 0 0
chr11:703491|703719 hsa-miR-4683 1 0 0
chr11:703491|703719 hsa-miR-4692 0 1 0
chr11:703491|703719 hsa-miR-4741 1 0 0
chr11:703491|703719 hsa-miR-5100 1 0 0
chr11:703491|703719 hsa-miR-5691 0 1 0
chr11:703491|703719 hsa-miR-5787 1 0 0
chr11:703491|703719 hsa-miR-6072 1 1 0
chr11:703491|703719 hsa-miR-8089 0 1 0
chr11:703491|703719 hsa-miR-12116 1 0 0
chr11:703491|703719 hsa-miR-4435 0 1 0
chr11:703491|703719 hsa-miR-3194-3p 0 1 0
chr11:703491|703719 hsa-miR-4726-3p 1 0 0
chr11:703491|703719 hsa-miR-6836-3p 1 0 0
chr11:703491|703719 hsa-miR-1972 1 0 0
chr11:703491|703719 hsa-miR-4708-5p 1 0 0
chr11:703491|703719 hsa-miR-6089 1 0 0
chr11:703491|703719 hsa-miR-3677-5p 1 0 0
chr11:703491|703719 hsa-miR-7154-3p 0 1 0
chr11:703491|703719 hsa-miR-7160-5p 1 0 0
chr11:703491|703719 hsa-miR-6890-5p 0 1 0
chr11:703491|703719 hsa-miR-6721-5p 1 0 0
chr11:703491|703719 hsa-miR-3189-5p 1 1 0
chr11:703491|703719 hsa-miR-6742-5p 1 0 0
chr11:703491|703719 hsa-miR-6884-3p 0 1 0
chr11:703491|703719 hsa-miR-3944-3p 0 1 0
chr11:703491|703719 hsa-miR-4783-3p 1 1 0
chr11:703491|703719 hsa-miR-5010-3p 0 1 0
chr11:703491|703719 hsa-miR-5001-3p 0 1 0
chr11:703491|703719 hsa-miR-1304-3p 1 1 0
chr11:703491|703719 hsa-miR-4640-3p 1 1 0
chr11:703491|703719 hsa-miR-4707-5p 1 0 0
chr11:703491|703719 hsa-miR-6785-3p 1 0 0
chr11:703491|703719 hsa-miR-4758-3p 0 1 0
chr11:703491|703719 hsa-miR-4773 0 1 0
chr11:703491|703719 hsa-miR-4649-3p 1 0 0
chr11:703491|703719 hsa-miR-5004-5p 0 1 0
chr11:703491|703719 hsa-miR-1285-5p 0 1 0
chr11:703491|703719 hsa-miR-6798-3p 1 0 0
chr11:703491|703719 hsa-miR-6729-3p 1 1 0
chr11:703491|703719 hsa-miR-589-3p 0 1 0
chr11:703491|703719 hsa-miR-1207-5p 1 0 0
chr11:703491|703719 hsa-miR-4763-3p 1 0 0
chr11:703491|703719 hsa-miR-6893-5p 0 1 0
chr11:703491|703719 hsa-miR-5001-5p 0 1 0
chr11:703491|703719 hsa-miR-6743-5p 1 0 0
chr11:703491|703719 hsa-miR-6756-5p 1 0 0
chr11:703491|703719 hsa-miR-7107-5p 1 0 0
chr11:703491|703719 hsa-miR-6808-5p 0 1 0
chr11:703491|703719 hsa-miR-6879-5p 1 0 0
chr11:703491|703719 hsa-miR-3620-5p 1 0 0
chr11:703491|703719 hsa-miR-328-5p 1 0 0
chr11:703491|703719 hsa-miR-7843-5p 0 1 0
chr11:703491|703719 hsa-miR-769-3p 1 0 0
chr11:703491|703719 hsa-miR-6792-3p 0 1 0
chr11:703491|703719 hsa-miR-6805-3p 0 1 0
chr11:703491|703719 hsa-miR-6829-3p 1 0 0
chr11:703491|703719 hsa-miR-10400-3p 1 0 0
chr11:703491|703719 hsa-miR-6775-3p 1 0 0
chr11:703491|703719 hsa-miR-10392-3p 0 1 0
chr11:703491|703719 hsa-miR-6891-3p 1 1 0
chr11:703491|703719 hsa-miR-4756-5p 1 0 0
chr11:703491|703719 hsa-miR-6744-3p 1 0 0
chr11:703491|703719 hsa-miR-619-5p 1 0 0
chr11:703491|703719 hsa-miR-3619-5p 0 1 0
chr11:703491|703719 hsa-miR-6807-3p 0 1 0
chr11:703491|703719 hsa-miR-4653-5p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

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    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr11:703491|703719
ORF Type ORF1
Protein Length 43
Nucleotide Length 132
Protein Sequence MPACEAELGLLRAQGLPHPASPARLGNTGGAWPRSKLGSQNTN
Nucleotide Sequence CTGCCTGCCTGTGAGGCAGAGCTGGGGTTGCTCAGAGCACAAGGCCTACCCCATCCTGCGTCTCCAGCCCGACTTGGAAACACAGGTGGGGCCTGGCCACGGAGTAAACTGGGATCTCAGAACACAAATTAG
CircID chr11:703491|703719
ORF Type ORF2
Protein Length 66
Nucleotide Length 201
Protein Sequence MHRACLPVRQSWGCSEHKAYPILRLQPDLETQVGPGHGVNWDLRTQIRTIGELGGDGGCSEMRPLF
Nucleotide Sequence TTGCACCGGGCCTGCCTGCCTGTGAGGCAGAGCTGGGGTTGCTCAGAGCACAAGGCCTACCCCATCCTGCGTCTCCAGCCCGACTTGGAAACACAGGTGGGGCCTGGCCACGGAGTAAACTGGGATCTCAGAACACAAATTAGGACCATTGGGGAACTAGGGGGTGATGGGGGATGCAGTGAGATGAGGCCTCTGTTCTGA
CircID chr11:703491|703719
ORF Type ORF3
Protein Length 31
Nucleotide Length 96
Protein Sequence MCSEIPVYSVARPHLCFQVGLETQDGVGLVL
Nucleotide Sequence TTGTGTTCTGAGATCCCAGTTTACTCCGTGGCCAGGCCCCACCTGTGTTTCCAAGTCGGGCTGGAGACGCAGGATGGGGTAGGCCTTGTGCTCTGA
CircID chr11:703491|703719
ORF Type ORF4
Protein Length 40
Nucleotide Length 123
Protein Sequence MHPPSPPSSPMVLICVLRSQFTPWPGPTCVSKSGWRRRMG
Nucleotide Sequence CTGCATCCCCCATCACCCCCTAGTTCCCCAATGGTCCTAATTTGTGTTCTGAGATCCCAGTTTACTCCGTGGCCAGGCCCCACCTGTGTTTCCAAGTCGGGCTGGAGACGCAGGATGGGGTAG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab