CircRNA Information

General Information
circRNA Basic Information
CircID chr11:70417013|70419856
Strand +
CircType exon
Host Gene ENSG00000085733.15;
Algorism find_circ;CIRI2;DCC;
Sequence ACTACTCCAGTGGTTTTGGCGGCAAGTATGGCGTGCAGGCCGACCGAGTAGACAAGAGCGCGGTGGGCTTCGACTACCAGGGCAAGACGGAGAAGCACGAGTCACAGAGAGGTGGGGCGGACCCCACGATTACTCCAAAGGTTTCGGCGGCAAATACGGTATCGACAAGGACAAAGTGGATAAGAGCGCCGTTGGCTTTGAGTATCAAGGCAAAACGGAGAAGCACGAGTCCCAGAAAG
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr11:70417013|70419856 hsa-miR-31-5p 0 0 1
chr11:70417013|70419856 hsa-miR-31-3p 0 0 1
chr11:70417013|70419856 hsa-miR-335-5p 0 0 1
chr11:70417013|70419856 hsa-miR-335-3p 0 0 1
chr11:70417013|70419856 hsa-miR-496 0 0 1
chr11:70417013|70419856 hsa-miR-520g-5p 0 0 1
chr11:70417013|70419856 hsa-miR-520g-3p 0 0 1
chr11:70417013|70419856 hsa-miR-520h 0 0 1
chr11:70417013|70419856 hsa-miR-652-5p 0 0 1
chr11:70417013|70419856 hsa-miR-652-3p 0 0 1
chr11:70417013|70419856 hsa-miR-411-5p 0 0 1
chr11:70417013|70419856 hsa-miR-411-3p 0 0 1
chr11:70417013|70419856 hsa-miR-541-5p 0 0 1
chr11:70417013|70419856 hsa-miR-541-3p 0 0 1
chr11:70417013|70419856 hsa-miR-1261 0 0 1
chr11:70417013|70419856 hsa-miR-1306-5p 0 0 1
chr11:70417013|70419856 hsa-miR-1306-3p 0 0 1
chr11:70417013|70419856 hsa-miR-1825 0 0 1
chr11:70417013|70419856 hsa-miR-140-5p 0 0 1
chr11:70417013|70419856 hsa-miR-199a-5p 0 0 1
chr11:70417013|70419856 hsa-miR-654-5p 0 0 1
chr11:70417013|70419856 hsa-miR-339-3p 0 0 1
chr11:70417013|70419856 hsa-miR-508-5p 0 0 1
chr11:70417013|70419856 hsa-miR-199b-5p 0 0 1
chr11:70417013|70419856 hsa-miR-184 1 0 0
chr11:70417013|70419856 hsa-miR-298 1 0 0
chr11:70417013|70419856 hsa-miR-3131 1 0 0
chr11:70417013|70419856 hsa-miR-3918 1 0 0
chr11:70417013|70419856 hsa-miR-4462 1 0 0
chr11:70417013|70419856 hsa-miR-4466 1 0 0
chr11:70417013|70419856 hsa-miR-4470 1 0 0
chr11:70417013|70419856 hsa-miR-4484 1 0 0
chr11:70417013|70419856 hsa-miR-4534 1 0 0
chr11:70417013|70419856 hsa-miR-3960 1 0 0
chr11:70417013|70419856 hsa-miR-4696 1 0 0
chr11:70417013|70419856 hsa-miR-4739 1 0 0
chr11:70417013|70419856 hsa-miR-5090 1 0 0
chr11:70417013|70419856 hsa-miR-12118 1 0 0
chr11:70417013|70419856 hsa-miR-6809-5p 1 0 0
chr11:70417013|70419856 hsa-miR-1236-5p 1 0 0
chr11:70417013|70419856 hsa-miR-6806-5p 1 0 0
chr11:70417013|70419856 hsa-miR-6721-5p 1 0 0
chr11:70417013|70419856 hsa-miR-4655-5p 1 0 0
chr11:70417013|70419856 hsa-miR-197-5p 1 0 0
chr11:70417013|70419856 hsa-miR-6760-5p 1 0 0
chr11:70417013|70419856 hsa-miR-6821-5p 1 0 0
chr11:70417013|70419856 hsa-miR-5006-5p 1 0 0
chr11:70417013|70419856 hsa-miR-6786-5p 1 0 0
chr11:70417013|70419856 hsa-miR-6753-5p 1 0 0
chr11:70417013|70419856 hsa-miR-6781-5p 1 0 0
chr11:70417013|70419856 hsa-miR-7112-5p 1 0 0
chr11:70417013|70419856 hsa-miR-6895-5p 1 0 0
chr11:70417013|70419856 hsa-miR-6869-5p 1 0 0
chr11:70417013|70419856 hsa-miR-3158-3p 1 0 0
chr11:70417013|70419856 hsa-miR-483-5p 1 0 0
chr11:70417013|70419856 hsa-miR-2277-5p 1 0 0
chr11:70417013|70419856 hsa-miR-10400-5p 1 0 0
chr11:70417013|70419856 hsa-miR-6769b-5p 1 0 0
chr11:70417013|70419856 hsa-miR-6865-5p 1 0 0
chr11:70417013|70419856 hsa-miR-6870-5p 1 0 0
chr11:70417013|70419856 hsa-miR-6775-5p 1 0 0
chr11:70417013|70419856 hsa-miR-5001-5p 1 0 0
chr11:70417013|70419856 hsa-miR-6754-5p 1 0 0
chr11:70417013|70419856 hsa-miR-6769a-5p 1 0 0
chr11:70417013|70419856 hsa-miR-1249-5p 1 0 0
chr11:70417013|70419856 hsa-miR-6774-5p 1 0 0
chr11:70417013|70419856 hsa-miR-6879-5p 1 0 0
chr11:70417013|70419856 hsa-miR-1915-3p 1 0 0
chr11:70417013|70419856 hsa-miR-3620-5p 1 0 0
chr11:70417013|70419856 hsa-miR-10392-5p 1 0 0
chr11:70417013|70419856 hsa-miR-4632-5p 1 0 0
chr11:70417013|70419856 hsa-miR-4649-5p 1 0 0
chr11:70417013|70419856 hsa-miR-4685-5p 1 0 0
chr11:70417013|70419856 hsa-miR-4726-5p 1 0 0
chr11:70417013|70419856 hsa-miR-6729-5p 1 0 0
chr11:70417013|70419856 hsa-miR-6735-5p 1 0 0
chr11:70417013|70419856 hsa-miR-6777-5p 1 0 0
chr11:70417013|70419856 hsa-miR-4436b-3p 1 0 0
chr11:70417013|70419856 hsa-miR-6845-5p 1 0 0
Target Genes
       

Note about Function Analysis:
We also provide this interface that can help researchers to perform GO, KEGG and disease enrichment analysis easily. This function will take around 30 seconds. After the analysis, this page will automatically jump to the result page.

Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr11:70417013|70419856
ORF Type ORF1
Protein Length 69
Nucleotide Length 207
Protein Sequence VQADRVDKSAVGFDYQGKTEKHESQRGGADPTITPKVSAANTVSTRTKWIRAPLALSIKAKRRSTSPRK
Nucleotide Sequence GTGCAGGCCGACCGAGTAGACAAGAGCGCGGTGGGCTTCGACTACCAGGGCAAGACGGAGAAGCACGAGTCACAGAGAGGTGGGGCGGACCCCACGATTACTCCAAAGGTTTCGGCGGCAAATACGGTATCGACAAGGACAAAGTGGATAAGAGCGCCGTTGGCTTTGAGTATCAAGGCAAAACGGAGAAGCACGAGTCCCAGAAAG
CircID chr11:70417013|70419856
ORF Type ORF2
Protein Length 51
Nucleotide Length 153
Protein Sequence VLLRFALILKANGALIHFVLVDTVFAAETFGVIVGSAPPLCDSCFSVLPW*
Nucleotide Sequence GTGCTTCTCCGTTTTGCCTTGATACTCAAAGCCAACGGCGCTCTTATCCACTTTGTCCTTGTCGATACCGTATTTGCCGCCGAAACCTTTGGAGTAATCGTGGGGTCCGCCCCACCTCTCTGTGACTCGTGCTTCTCCGTCTTGCCCTGGTAG
CircID chr11:70417013|70419856
ORF Type ORF1
Protein Length 38
Nucleotide Length 117
Protein Sequence MGLVLLRFALILKANGALIHFVLVDTVFAAETFGVISL
Nucleotide Sequence CTGGGACTCGTGCTTCTCCGTTTTGCCTTGATACTCAAAGCCAACGGCGCTCTTATCCACTTTGTCCTTGTCGATACCGTATTTGCCGCCGAAACCTTTGGAGTAATCTCTCTGTGA
CircID chr11:70417013|70419856
ORF Type ORF2
Protein Length 26
Nucleotide Length 78
Protein Sequence MVVEAHRALVYSVGLHAILAAKTTGV
Nucleotide Sequence CTGGTAGTCGAAGCCCACCGCGCTCTTGTCTACTCGGTCGGCCTGCACGCCATACTTGCCGCCAAAACCACTGGAGTA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
chr11:70417013|70419856 KHSRP 0 6 0
chr11:70417013|70419856 ELAVL1 3 2 1
chr11:70417013|70419856 ELAVL3 1 0 0
chr11:70417013|70419856 SF3B4 2 2 0
chr11:70417013|70419856 CELF2 0 2 0
chr11:70417013|70419856 PRPF8 0 11 0
chr11:70417013|70419856 UPF1 2 4 0
chr11:70417013|70419856 SRSF10 0 1 0
chr11:70417013|70419856 TAF15 0 5 0
chr11:70417013|70419856 FMR1 0 8 7
chr11:70417013|70419856 CPSF6 0 1 0
chr11:70417013|70419856 TIA1 0 5 0
chr11:70417013|70419856 TROVE2 1 0 0
chr11:70417013|70419856 FUS 1 6 0
chr11:70417013|70419856 DGCR8 0 6 0
chr11:70417013|70419856 SRSF7 0 1 1
chr11:70417013|70419856 SRSF1 0 6 5
chr11:70417013|70419856 NOP58 0 2 3
chr11:70417013|70419856 DHX9 1 0 0
chr11:70417013|70419856 U2AF1 0 0 3
chr11:70417013|70419856 U2AF2 3 9 4
chr11:70417013|70419856 DDX54 2 5 10
chr11:70417013|70419856 RBM10 1 3 0
chr11:70417013|70419856 PCBP2 0 2 0
chr11:70417013|70419856 HNRNPM 0 7 0
chr11:70417013|70419856 SF3A3 2 2 0
chr11:70417013|70419856 MBNL1 0 1 0
chr11:70417013|70419856 PTBP1 0 3 1
chr11:70417013|70419856 HNRNPC 15 0 0
chr11:70417013|70419856 TRA2A 0 1 2
chr11:70417013|70419856 ZNF184 0 1 1
chr11:70417013|70419856 HNRNPA1 1 12 0
chr11:70417013|70419856 DDX3X 0 1 0
chr11:70417013|70419856 TIAL1 0 3 0
chr11:70417013|70419856 LARP7 1 3 0
chr11:70417013|70419856 SMNDC1 3 1 0
chr11:70417013|70419856 MSI2 0 0 1
chr11:70417013|70419856 ACIN1 3 16 7
chr11:70417013|70419856 LIN28B 0 1 3
chr11:70417013|70419856 FTO 0 3 0
chr11:70417013|70419856 FXR1 0 2 3
chr11:70417013|70419856 BCCIP 0 2 1
chr11:70417013|70419856 SND1 0 4 0
chr11:70417013|70419856 IGF2BP1 0 2 0
chr11:70417013|70419856 GTF2F1 0 2 0
chr11:70417013|70419856 IGF2BP2 4 4 4
chr11:70417013|70419856 NPM1 0 1 0
chr11:70417013|70419856 AUH 1 2 0
chr11:70417013|70419856 TARDBP 1 10 1
chr11:70417013|70419856 BUD13 1 3 3
chr11:70417013|70419856 RBFOX2 1 19 0
chr11:70417013|70419856 CNBP 0 1 0
chr11:70417013|70419856 EIF4G2 0 0 1
chr11:70417013|70419856 CSTF2T 1 2 2
chr11:70417013|70419856 FXR2 0 3 4
chr11:70417013|70419856 VIM 0 0 1
chr11:70417013|70419856 RBM22 0 2 0
chr11:70417013|70419856 XRN2 1 1 0
chr11:70417013|70419856 HNRNPK 0 3 0
chr11:70417013|70419856 FBL 0 3 3
chr11:70417013|70419856 EIF4A3 7 10 4
chr11:70417013|70419856 AGO2 0 3 2
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab