CircRNA Information

General Information
circRNA Basic Information
CircID chr11:70435745|70436025
Strand +
CircType exon
Host Gene ENSG00000085733.14;
Algorism CIRI2;
Sequence CGCCCCAGGCTGCCCGGTGGCCCAGGGACCATATGGGTGACAGTTAAGACATCAGCCTTTGTGAAAAGCCAAGCCCGACGCAGACCTCAACTGCACTGTGCGTCCCAATCCAGAGACCCGCGGGGCAGGGGAGGATTTCAAGGACTCAGTGACACTGCCCGGCGGGGACAGGAGAGGCTCCCAGCAGCCCTCCCGGTGACCTGGGCATCAGGGGATGGGTAGAGATGAGGACAAGCCGGAGTGGGCACAGGAAAAAAACCAGGGTCTCTGCTAGAAGTCAC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr11:70435745|70436025 hsa-miR-148a-5p 0 0 1
chr11:70435745|70436025 hsa-miR-148a-3p 0 0 1
chr11:70435745|70436025 hsa-miR-34a-5p 0 0 1
chr11:70435745|70436025 hsa-miR-34a-3p 0 0 1
chr11:70435745|70436025 hsa-miR-152-5p 0 0 1
chr11:70435745|70436025 hsa-miR-152-3p 0 0 1
chr11:70435745|70436025 hsa-miR-326 0 0 1
chr11:70435745|70436025 hsa-miR-148b-5p 0 0 1
chr11:70435745|70436025 hsa-miR-148b-3p 0 0 1
chr11:70435745|70436025 hsa-miR-449a 0 1 1
chr11:70435745|70436025 hsa-miR-504-5p 0 0 1
chr11:70435745|70436025 hsa-miR-504-3p 0 0 1
chr11:70435745|70436025 hsa-miR-593-5p 0 0 1
chr11:70435745|70436025 hsa-miR-593-3p 0 0 1
chr11:70435745|70436025 hsa-miR-597-5p 0 0 1
chr11:70435745|70436025 hsa-miR-597-3p 0 0 1
chr11:70435745|70436025 hsa-miR-617 0 0 1
chr11:70435745|70436025 hsa-miR-661 0 0 1
chr11:70435745|70436025 hsa-miR-449b-5p 0 0 1
chr11:70435745|70436025 hsa-miR-449b-3p 0 0 1
chr11:70435745|70436025 hsa-miR-660-5p 0 0 1
chr11:70435745|70436025 hsa-miR-660-3p 0 0 1
chr11:70435745|70436025 hsa-miR-668-5p 0 0 1
chr11:70435745|70436025 hsa-miR-668-3p 0 0 1
chr11:70435745|70436025 hsa-miR-920 0 0 1
chr11:70435745|70436025 hsa-miR-513b-5p 0 0 1
chr11:70435745|70436025 hsa-miR-513b-3p 0 0 1
chr11:70435745|70436025 hsa-miR-331-3p 0 0 1
chr11:70435745|70436025 hsa-miR-324-3p 0 0 1
chr11:70435745|70436025 hsa-miR-330-5p 0 0 1
chr11:70435745|70436025 hsa-miR-1302 0 0 1
chr11:70435745|70436025 hsa-miR-34c-5p 0 1 1
chr11:70435745|70436025 hsa-miR-128 0 0 1
chr11:70435745|70436025 hsa-miR-203 0 0 1
chr11:70435745|70436025 hsa-miR-612 1 1 0
chr11:70435745|70436025 hsa-miR-618 1 0 0
chr11:70435745|70436025 hsa-miR-623 1 0 0
chr11:70435745|70436025 hsa-miR-1200 1 0 0
chr11:70435745|70436025 hsa-miR-3122 0 1 0
chr11:70435745|70436025 hsa-miR-3195 1 0 0
chr11:70435745|70436025 hsa-miR-4292 1 1 0
chr11:70435745|70436025 hsa-miR-3621 1 0 0
chr11:70435745|70436025 hsa-miR-3929 0 1 0
chr11:70435745|70436025 hsa-miR-4449 1 0 0
chr11:70435745|70436025 hsa-miR-4507 1 0 0
chr11:70435745|70436025 hsa-miR-1587 1 0 0
chr11:70435745|70436025 hsa-miR-5193 1 0 0
chr11:70435745|70436025 hsa-miR-378j 0 1 0
chr11:70435745|70436025 hsa-miR-8075 0 1 0
chr11:70435745|70436025 hsa-miR-6749-3p 1 1 0
chr11:70435745|70436025 hsa-miR-7160-5p 1 0 0
chr11:70435745|70436025 hsa-miR-6845-3p 0 1 0
chr11:70435745|70436025 hsa-miR-4697-3p 1 0 0
chr11:70435745|70436025 hsa-miR-6829-5p 1 1 0
chr11:70435745|70436025 hsa-miR-4655-3p 1 0 0
chr11:70435745|70436025 hsa-miR-7109-3p 0 1 0
chr11:70435745|70436025 hsa-miR-939-3p 1 1 0
chr11:70435745|70436025 hsa-miR-1247-5p 1 0 0
chr11:70435745|70436025 hsa-miR-3944-3p 1 0 0
chr11:70435745|70436025 hsa-miR-4640-5p 1 0 0
chr11:70435745|70436025 hsa-miR-296-3p 1 1 0
chr11:70435745|70436025 hsa-miR-6771-5p 1 0 0
chr11:70435745|70436025 hsa-miR-92b-5p 1 0 0
chr11:70435745|70436025 hsa-miR-4717-3p 1 0 0
chr11:70435745|70436025 hsa-miR-7111-3p 1 1 0
chr11:70435745|70436025 hsa-miR-7112-5p 0 1 0
chr11:70435745|70436025 hsa-miR-4646-3p 1 0 0
chr11:70435745|70436025 hsa-miR-6811-3p 1 0 0
chr11:70435745|70436025 hsa-miR-6889-3p 1 1 0
chr11:70435745|70436025 hsa-miR-6752-3p 0 1 0
chr11:70435745|70436025 hsa-miR-1914-5p 1 1 0
chr11:70435745|70436025 hsa-miR-6773-3p 0 1 0
chr11:70435745|70436025 hsa-miR-6777-3p 1 0 0
chr11:70435745|70436025 hsa-miR-518c-5p 0 1 0
chr11:70435745|70436025 hsa-miR-6748-3p 0 1 0
chr11:70435745|70436025 hsa-miR-7152-5p 0 1 0
chr11:70435745|70436025 hsa-miR-3670 1 0 0
chr11:70435745|70436025 hsa-miR-181d-3p 0 1 0
chr11:70435745|70436025 hsa-miR-6800-3p 0 1 0
chr11:70435745|70436025 hsa-miR-135a-5p 1 0 0
chr11:70435745|70436025 hsa-miR-3620-5p 1 0 0
chr11:70435745|70436025 hsa-miR-4726-5p 1 0 0
chr11:70435745|70436025 hsa-miR-6848-5p 1 0 0
chr11:70435745|70436025 hsa-miR-3187-5p 0 1 0
chr11:70435745|70436025 hsa-miR-6724-5p 1 0 0
chr11:70435745|70436025 hsa-miR-6791-5p 1 1 0
chr11:70435745|70436025 hsa-miR-6753-3p 0 1 0
chr11:70435745|70436025 hsa-miR-6762-5p 0 1 0
chr11:70435745|70436025 hsa-miR-6810-3p 0 1 0
chr11:70435745|70436025 hsa-miR-6829-3p 1 0 0
chr11:70435745|70436025 hsa-miR-6775-3p 1 0 0
chr11:70435745|70436025 hsa-miR-4723-3p 1 0 0
chr11:70435745|70436025 hsa-miR-483-3p 1 0 0
chr11:70435745|70436025 hsa-miR-6529-3p 0 1 0
chr11:70435745|70436025 hsa-miR-6819-3p 0 1 0
chr11:70435745|70436025 hsa-miR-6823-3p 0 1 0
chr11:70435745|70436025 hsa-miR-6891-3p 1 1 0
chr11:70435745|70436025 hsa-miR-6744-3p 0 1 0
chr11:70435745|70436025 hsa-miR-6848-3p 0 1 0
chr11:70435745|70436025 hsa-miR-6737-3p 1 0 0
chr11:70435745|70436025 hsa-miR-135b-5p 1 0 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr11:70435745|70436025
ORF Type ORF1
Protein Length 70
Nucleotide Length 213
Protein Sequence MPGGPGTIWVTVKTSAFVKSQARRRPQLHCASQSRDPRGRGGFQGLSDTARRGQERLPAALPVTWASGDG
Nucleotide Sequence CTGCCCGGTGGCCCAGGGACCATATGGGTGACAGTTAAGACATCAGCCTTTGTGAAAAGCCAAGCCCGACGCAGACCTCAACTGCACTGTGCGTCCCAATCCAGAGACCCGCGGGGCAGGGGAGGATTTCAAGGACTCAGTGACACTGCCCGGCGGGGACAGGAGAGGCTCCCAGCAGCCCTCCCGGTGACCTGGGCATCAGGGGATGGGTAG
CircID chr11:70435745|70436025
ORF Type ORF2
Protein Length 27
Nucleotide Length 81
Protein Sequence MGIRGWVEMRTSRSGHRKKTRVSARSH
Nucleotide Sequence CTGGGCATCAGGGGATGGGTAGAGATGAGGACAAGCCGGAGTGGGCACAGGAAAAAAACCAGGGTCTCTGCTAGAAGTCAC
CircID chr11:70435745|70436025
ORF Type ORF3
Protein Length 27
Nucleotide Length 81
Protein Sequence MRRAWLFTKADVLTVTHMVPGPPGSLG
Nucleotide Sequence CTGCGTCGGGCTTGGCTTTTCACAAAGGCTGATGTCTTAACTGTCACCCATATGGTCCCTGGGCCACCGGGCAGCCTGGGG
CircID chr11:70435745|70436025
ORF Type ORF4
Protein Length 38
Nucleotide Length 117
Protein Sequence MVFFLCPLRLVLISTHPLMPRSPGGLLGASPVPAGQCH
Nucleotide Sequence CTGGTTTTTTTCCTGTGCCCACTCCGGCTTGTCCTCATCTCTACCCATCCCCTGATGCCCAGGTCACCGGGAGGGCTGCTGGGAGCCTCTCCTGTCCCCGCCGGGCAGTGTCACTGA
CircID chr11:70435745|70436025
ORF Type ORF5
Protein Length 39
Nucleotide Length 120
Protein Sequence MSPPGSVTESLKSSPAPRVSGLGRTVQLRSASGLAFHKG
Nucleotide Sequence CTGTCCCCGCCGGGCAGTGTCACTGAGTCCTTGAAATCCTCCCCTGCCCCGCGGGTCTCTGGATTGGGACGCACAGTGCAGTTGAGGTCTGCGTCGGGCTTGGCTTTTCACAAAGGCTGA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab