CircRNA Information

General Information
circRNA Basic Information
CircID chr11:71434580|71434834
Strand +
CircType exon
Host Gene ENSG00000172893.14;
Algorism CIRI2;
Sequence TGGGGAGAAAGGGGCTTTCATGTCGTTTCCTTCCTGCTCCTGCTGCACAGCTGCCAGGAGTGCTCTGCCTGGAGTCTGCAGACCTCAGAGAGGTCCCAGCACCGGCTGTGGCCTTTCAGGTGTAGGCAGGTGGGCTCTGCTTCCCGATTCCCTGTGAGCGCCCACCCTCTCGAAAGAATTTTCTGCTTGCCCTATGACTGTGCAGACTCTGGCTCGAGCAACCCGGGGAACTTCACCCTCAGGGGCCTCCCACAC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr11:71434580|71434834 hsa-miR-107 0 0 1
chr11:71434580|71434834 hsa-miR-214-5p 0 0 1
chr11:71434580|71434834 hsa-miR-214-3p 0 0 1
chr11:71434580|71434834 hsa-miR-488-5p 0 0 1
chr11:71434580|71434834 hsa-miR-488-3p 0 0 1
chr11:71434580|71434834 hsa-miR-541-5p 0 0 1
chr11:71434580|71434834 hsa-miR-541-3p 0 0 1
chr11:71434580|71434834 hsa-miR-1205 0 0 1
chr11:71434580|71434834 hsa-miR-1250-5p 0 0 1
chr11:71434580|71434834 hsa-miR-1250-3p 0 0 1
chr11:71434580|71434834 hsa-miR-1252-5p 0 0 1
chr11:71434580|71434834 hsa-miR-1252-3p 0 0 1
chr11:71434580|71434834 hsa-miR-885-3p 0 0 1
chr11:71434580|71434834 hsa-miR-1184 0 0 1
chr11:71434580|71434834 hsa-miR-654-5p 0 0 1
chr11:71434580|71434834 hsa-miR-508-5p 0 1 1
chr11:71434580|71434834 hsa-miR-1224-3p 0 1 1
chr11:71434580|71434834 hsa-miR-513a-5p 0 1 1
chr11:71434580|71434834 hsa-miR-125a-5p 0 0 1
chr11:71434580|71434834 hsa-miR-483-3p 0 0 1
chr11:71434580|71434834 hsa-miR-125b 0 0 1
chr11:71434580|71434834 hsa-miR-103 0 0 1
chr11:71434580|71434834 hsa-miR-220c 0 0 1
chr11:71434580|71434834 hsa-miR-298 1 0 0
chr11:71434580|71434834 hsa-miR-544b 0 1 0
chr11:71434580|71434834 hsa-miR-3183 0 1 0
chr11:71434580|71434834 hsa-miR-4322 1 0 0
chr11:71434580|71434834 hsa-miR-4270 0 1 0
chr11:71434580|71434834 hsa-miR-4449 1 0 0
chr11:71434580|71434834 hsa-miR-4476 0 1 0
chr11:71434580|71434834 hsa-miR-4496 0 1 0
chr11:71434580|71434834 hsa-miR-4651 1 0 0
chr11:71434580|71434834 hsa-miR-4673 0 1 0
chr11:71434580|71434834 hsa-miR-4739 1 0 0
chr11:71434580|71434834 hsa-miR-4767 1 0 0
chr11:71434580|71434834 hsa-miR-6081 0 1 0
chr11:71434580|71434834 hsa-miR-6165 0 1 0
chr11:71434580|71434834 hsa-miR-8073 1 1 0
chr11:71434580|71434834 hsa-miR-9899 1 0 0
chr11:71434580|71434834 hsa-miR-12119 0 1 0
chr11:71434580|71434834 hsa-miR-4435 1 0 0
chr11:71434580|71434834 hsa-miR-6747-3p 0 1 0
chr11:71434580|71434834 hsa-miR-1273h-3p 0 1 0
chr11:71434580|71434834 hsa-miR-4433a-3p 0 1 0
chr11:71434580|71434834 hsa-miR-671-5p 1 0 0
chr11:71434580|71434834 hsa-miR-7106-5p 1 0 0
chr11:71434580|71434834 hsa-miR-6804-5p 0 1 0
chr11:71434580|71434834 hsa-miR-6089 1 0 0
chr11:71434580|71434834 hsa-miR-4755-3p 1 0 0
chr11:71434580|71434834 hsa-miR-6727-5p 1 0 0
chr11:71434580|71434834 hsa-miR-3190-3p 1 0 0
chr11:71434580|71434834 hsa-miR-6782-5p 1 0 0
chr11:71434580|71434834 hsa-miR-5008-5p 0 1 0
chr11:71434580|71434834 hsa-miR-4783-3p 0 1 0
chr11:71434580|71434834 hsa-miR-4640-5p 1 0 0
chr11:71434580|71434834 hsa-miR-6771-5p 0 1 0
chr11:71434580|71434834 hsa-miR-4732-5p 1 0 0
chr11:71434580|71434834 hsa-miR-6861-3p 0 1 0
chr11:71434580|71434834 hsa-miR-425-3p 0 1 0
chr11:71434580|71434834 hsa-miR-6828-5p 0 1 0
chr11:71434580|71434834 hsa-miR-6769a-3p 0 1 0
chr11:71434580|71434834 hsa-miR-3944-5p 0 1 0
chr11:71434580|71434834 hsa-miR-6868-5p 0 1 0
chr11:71434580|71434834 hsa-miR-6501-3p 0 1 0
chr11:71434580|71434834 hsa-miR-2277-5p 1 0 0
chr11:71434580|71434834 hsa-miR-4766-5p 0 1 0
chr11:71434580|71434834 hsa-miR-6768-3p 0 1 0
chr11:71434580|71434834 hsa-miR-4717-5p 0 1 0
chr11:71434580|71434834 hsa-miR-5587-3p 0 1 0
chr11:71434580|71434834 hsa-miR-5007-5p 0 1 0
chr11:71434580|71434834 hsa-miR-1233-5p 1 1 0
chr11:71434580|71434834 hsa-miR-1273h-5p 0 1 0
chr11:71434580|71434834 hsa-miR-4763-3p 1 0 0
chr11:71434580|71434834 hsa-miR-6778-5p 1 1 0
chr11:71434580|71434834 hsa-miR-6752-5p 1 1 0
chr11:71434580|71434834 hsa-miR-6756-5p 1 1 0
chr11:71434580|71434834 hsa-miR-6803-5p 1 0 0
chr11:71434580|71434834 hsa-miR-10401-5p 0 1 0
chr11:71434580|71434834 hsa-miR-6751-5p 1 1 0
chr11:71434580|71434834 hsa-miR-6779-5p 0 1 0
chr11:71434580|71434834 hsa-miR-6788-5p 1 0 0
chr11:71434580|71434834 hsa-miR-6797-5p 0 1 0
chr11:71434580|71434834 hsa-miR-328-5p 1 0 0
chr11:71434580|71434834 hsa-miR-449c-5p 1 1 0
chr11:71434580|71434834 hsa-miR-4632-5p 1 0 0
chr11:71434580|71434834 hsa-miR-4649-5p 1 0 0
chr11:71434580|71434834 hsa-miR-4726-5p 1 0 0
chr11:71434580|71434834 hsa-miR-6735-5p 1 0 0
chr11:71434580|71434834 hsa-miR-6511a-5p 1 1 0
chr11:71434580|71434834 hsa-miR-6511b-5p 1 0 0
chr11:71434580|71434834 hsa-miR-10396a-3p 1 0 0
chr11:71434580|71434834 hsa-miR-10396b-3p 1 0 0
chr11:71434580|71434834 hsa-miR-6876-5p 0 1 0
chr11:71434580|71434834 hsa-miR-6791-5p 1 0 0
chr11:71434580|71434834 hsa-miR-6753-3p 1 0 0
chr11:71434580|71434834 hsa-miR-769-3p 0 1 0
chr11:71434580|71434834 hsa-miR-3622a-3p 0 1 0
chr11:71434580|71434834 hsa-miR-3619-5p 0 1 0
chr11:71434580|71434834 hsa-miR-6764-5p 1 0 0
chr11:71434580|71434834 hsa-miR-3622b-3p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr11:71434580|71434834
ORF Type ORF1
Protein Length 74
Nucleotide Length 222
Protein Sequence MLLLHSCQECSAWSLQTSERSQHRLWPFRCRQVGSASRFPVSAHPLERIFCLPYDCADSGSSNPGNFTLRGLPH
Nucleotide Sequence CTGCTCCTGCTGCACAGCTGCCAGGAGTGCTCTGCCTGGAGTCTGCAGACCTCAGAGAGGTCCCAGCACCGGCTGTGGCCTTTCAGGTGTAGGCAGGTGGGCTCTGCTTCCCGATTCCCTGTGAGCGCCCACCCTCTCGAAAGAATTTTCTGCTTGCCCTATGACTGTGCAGACTCTGGCTCGAGCAACCCGGGGAACTTCACCCTCAGGGGCCTCCCACAC
CircID chr11:71434580|71434834
ORF Type ORF2
Protein Length 45
Nucleotide Length 138
Protein Sequence MSFPSCSCCTAARSALPGVCRPQRGPSTGCGLSGVGRWALLPDSL
Nucleotide Sequence ATGTCGTTTCCTTCCTGCTCCTGCTGCACAGCTGCCAGGAGTGCTCTGCCTGGAGTCTGCAGACCTCAGAGAGGTCCCAGCACCGGCTGTGGCCTTTCAGGTGTAGGCAGGTGGGCTCTGCTTCCCGATTCCCTGTGA
CircID chr11:71434580|71434834
ORF Type ORF3
Protein Length 27
Nucleotide Length 81
Protein Sequence MQTPGRALLAAVQQEQEGNDMKAPFSP
Nucleotide Sequence CTGCAGACTCCAGGCAGAGCACTCCTGGCAGCTGTGCAGCAGGAGCAGGAAGGAAACGACATGAAAGCCCCTTTCTCCCCA
CircID chr11:71434580|71434834
ORF Type ORF4
Protein Length 33
Nucleotide Length 102
Protein Sequence MKGHSRCWDLSEVCRLQAEHSWQLCSRSRKETT
Nucleotide Sequence CTGAAAGGCCACAGCCGGTGCTGGGACCTCTCTGAGGTCTGCAGACTCCAGGCAGAGCACTCCTGGCAGCTGTGCAGCAGGAGCAGGAAGGAAACGACATGA
CircID chr11:71434580|71434834
ORF Type ORF5
Protein Length 29
Nucleotide Length 90
Protein Sequence MHSHRASRKFFREGGRSQGIGKQSPPAYT
Nucleotide Sequence CTGCACAGTCATAGGGCAAGCAGAAAATTCTTTCGAGAGGGTGGGCGCTCACAGGGAATCGGGAAGCAGAGCCCACCTGCCTACACCTGA
CircID chr11:71434580|71434834
ORF Type ORF6
Protein Length 29
Nucleotide Length 87
Protein Sequence MRSADSRQSTPGSCAAGAGRKRHESPFLP
Nucleotide Sequence CTGAGGTCTGCAGACTCCAGGCAGAGCACTCCTGGCAGCTGTGCAGCAGGAGCAGGAAGGAAACGACATGAAAGCCCCTTTCTCCCC
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab