CircRNA Information

General Information
circRNA Basic Information
CircID chr11:71983417|71983642
Strand -
CircType exon
Host Gene
Algorism CIRI2;
Sequence ATAGTAGCCTGCTCTGAATTTTTGTTGAATGAATGAATCTCAGCAAATTTATAATTTTCCAATAAACAATACTTCCTTCTTGAGTCACAAAGCAGCCACTGCCTGTATAATTCTTTTTATTTTATTCAAATTCGTTTCTCATTTGATCCTCCCCACCAGCTTGTGAGGTAATTTAATATCTGCACTCAACAGAAAAAGAGATTTTCTCATTCATTCAAATAAGCAC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr11:71983417|71983642 hsa-miR-34a-5p 0 0 1
chr11:71983417|71983642 hsa-miR-34a-3p 0 0 1
chr11:71983417|71983642 hsa-miR-134-5p 0 0 1
chr11:71983417|71983642 hsa-miR-134-3p 0 0 1
chr11:71983417|71983642 hsa-miR-186-5p 0 0 1
chr11:71983417|71983642 hsa-miR-186-3p 0 0 1
chr11:71983417|71983642 hsa-miR-340-5p 0 0 1
chr11:71983417|71983642 hsa-miR-340-3p 0 0 1
chr11:71983417|71983642 hsa-miR-449a 0 0 1
chr11:71983417|71983642 hsa-miR-539-5p 0 0 1
chr11:71983417|71983642 hsa-miR-539-3p 0 0 1
chr11:71983417|71983642 hsa-miR-604 0 0 1
chr11:71983417|71983642 hsa-miR-647 0 0 1
chr11:71983417|71983642 hsa-miR-449b-5p 0 0 1
chr11:71983417|71983642 hsa-miR-449b-3p 0 0 1
chr11:71983417|71983642 hsa-miR-421 0 0 1
chr11:71983417|71983642 hsa-miR-758-5p 0 0 1
chr11:71983417|71983642 hsa-miR-758-3p 0 0 1
chr11:71983417|71983642 hsa-miR-1298-5p 0 0 1
chr11:71983417|71983642 hsa-miR-1298-3p 0 0 1
chr11:71983417|71983642 hsa-miR-541-5p 0 0 1
chr11:71983417|71983642 hsa-miR-541-3p 0 0 1
chr11:71983417|71983642 hsa-miR-216b-5p 0 0 1
chr11:71983417|71983642 hsa-miR-216b-3p 0 0 1
chr11:71983417|71983642 hsa-miR-939-5p 0 0 1
chr11:71983417|71983642 hsa-miR-939-3p 0 0 1
chr11:71983417|71983642 hsa-miR-1267 0 0 1
chr11:71983417|71983642 hsa-miR-1252-5p 0 0 1
chr11:71983417|71983642 hsa-miR-1252-3p 0 0 1
chr11:71983417|71983642 hsa-miR-513b-5p 0 0 1
chr11:71983417|71983642 hsa-miR-513b-3p 0 0 1
chr11:71983417|71983642 hsa-miR-491-5p 1 0 1
chr11:71983417|71983642 hsa-miR-654-5p 0 0 1
chr11:71983417|71983642 hsa-miR-628-5p 0 0 1
chr11:71983417|71983642 hsa-miR-34c-5p 0 1 1
chr11:71983417|71983642 hsa-miR-513a-3p 0 0 1
chr11:71983417|71983642 hsa-miR-105 0 0 1
chr11:71983417|71983642 hsa-miR-138 0 0 1
chr11:71983417|71983642 hsa-miR-664 0 0 1
chr11:71983417|71983642 hsa-miR-3175 1 0 0
chr11:71983417|71983642 hsa-miR-4271 1 0 0
chr11:71983417|71983642 hsa-miR-3652 1 0 0
chr11:71983417|71983642 hsa-miR-4467 1 0 0
chr11:71983417|71983642 hsa-miR-4658 1 0 0
chr11:71983417|71983642 hsa-miR-4692 0 1 0
chr11:71983417|71983642 hsa-miR-4706 1 0 0
chr11:71983417|71983642 hsa-miR-4739 1 0 0
chr11:71983417|71983642 hsa-miR-5787 1 0 0
chr11:71983417|71983642 hsa-miR-12123 0 1 0
chr11:71983417|71983642 hsa-miR-138-5p 0 1 0
chr11:71983417|71983642 hsa-miR-3150a-3p 1 0 0
chr11:71983417|71983642 hsa-miR-6825-5p 1 1 0
chr11:71983417|71983642 hsa-miR-6894-5p 0 1 0
chr11:71983417|71983642 hsa-miR-6857-5p 1 0 0
chr11:71983417|71983642 hsa-miR-4687-3p 1 0 0
chr11:71983417|71983642 hsa-miR-7847-3p 1 0 0
chr11:71983417|71983642 hsa-miR-3151-5p 1 0 0
chr11:71983417|71983642 hsa-miR-3180-3p 1 0 0
chr11:71983417|71983642 hsa-miR-6748-5p 1 0 0
chr11:71983417|71983642 hsa-miR-3126-5p 1 0 0
chr11:71983417|71983642 hsa-miR-6810-5p 1 0 0
chr11:71983417|71983642 hsa-miR-6786-5p 1 0 0
chr11:71983417|71983642 hsa-miR-1226-5p 1 0 0
chr11:71983417|71983642 hsa-miR-1229-5p 1 0 0
chr11:71983417|71983642 hsa-miR-1908-5p 1 0 0
chr11:71983417|71983642 hsa-miR-6802-5p 1 0 0
chr11:71983417|71983642 hsa-miR-3065-5p 0 1 0
chr11:71983417|71983642 hsa-miR-6501-3p 0 1 0
chr11:71983417|71983642 hsa-miR-7159-5p 0 1 0
chr11:71983417|71983642 hsa-miR-10400-5p 1 0 0
chr11:71983417|71983642 hsa-miR-4763-3p 1 0 0
chr11:71983417|71983642 hsa-miR-6769b-5p 1 0 0
chr11:71983417|71983642 hsa-miR-1343-5p 1 0 0
chr11:71983417|71983642 hsa-miR-6756-5p 1 0 0
chr11:71983417|71983642 hsa-miR-6769a-5p 1 0 0
chr11:71983417|71983642 hsa-miR-6819-5p 1 0 0
chr11:71983417|71983642 hsa-miR-7111-5p 1 0 0
chr11:71983417|71983642 hsa-miR-4728-5p 1 0 0
chr11:71983417|71983642 hsa-miR-328-5p 1 0 0
chr11:71983417|71983642 hsa-miR-449c-5p 0 1 0
chr11:71983417|71983642 hsa-miR-6795-5p 1 1 0
chr11:71983417|71983642 hsa-miR-6883-5p 1 0 0
chr11:71983417|71983642 hsa-miR-6887-5p 1 1 0
chr11:71983417|71983642 hsa-miR-4723-5p 1 0 0
chr11:71983417|71983642 hsa-miR-4758-5p 1 0 0
chr11:71983417|71983642 hsa-miR-34b-5p 0 1 0
chr11:71983417|71983642 hsa-miR-6511b-5p 1 0 0
chr11:71983417|71983642 hsa-miR-6856-5p 1 0 0
chr11:71983417|71983642 hsa-miR-6876-5p 1 0 0
chr11:71983417|71983642 hsa-miR-4667-5p 1 0 0
chr11:71983417|71983642 hsa-miR-6790-5p 1 0 0
chr11:71983417|71983642 hsa-miR-2682-5p 1 1 0
chr11:71983417|71983642 hsa-miR-514b-5p 1 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr11:71983417|71983642
ORF Type ORF1
Protein Length 45
Nucleotide Length 138
Protein Sequence MNESQQIYNFPINNTSFLSHKAATACIILFILFKFVSHLILPTSL
Nucleotide Sequence ATGAATGAATCTCAGCAAATTTATAATTTTCCAATAAACAATACTTCCTTCTTGAGTCACAAAGCAGCCACTGCCTGTATAATTCTTTTTATTTTATTCAAATTCGTTTCTCATTTGATCCTCCCCACCAGCTTGTGA
CircID chr11:71983417|71983642
ORF Type ORF2
Protein Length 31
Nucleotide Length 93
Protein Sequence MLCDSRRKYCLLENYKFAEIHSFNKNSEQAT
Nucleotide Sequence CTGCTTTGTGACTCAAGAAGGAAGTATTGTTTATTGGAAAATTATAAATTTGCTGAGATTCATTCATTCAACAAAAATTCAGAGCAGGCTACT
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab