CircRNA Information

General Information
circRNA Basic Information
CircID chr11:72235695|72235986
Strand +
CircType exon
Host Gene ENSG00000165458.12;
Algorism CIRI2;
Sequence CTGGGGGTCAAGGGCTCCTCCCGGGGAGCTGCTCGGGGTGGGGCTGGGGGCCTCCCCGTTGGTGGCGGTTTCTCTGGTTCTTCAAATAACCTGGAGAGCGGGCAGGAGGCCTCTGTGAAGGCTGGCTTGCGGCTCCCTGACCTGCCAGGGATGCACAGGAGAGAGATGAAGTGGGGTTGACCAGATGCCCCCAGGTACCCTTTCATATGACATTCAACACAGCCCTAGCTCACCTGGGCTCCTGGCTCCCTCGGGACACAGAGGGGGCTTTGCTCTTTGCTCCTGCCTCATC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr11:72235695|72235986 hsa-miR-27a-5p 0 0 1
chr11:72235695|72235986 hsa-miR-27a-3p 0 0 1
chr11:72235695|72235986 hsa-miR-27b-5p 0 0 1
chr11:72235695|72235986 hsa-miR-27b-3p 0 0 1
chr11:72235695|72235986 hsa-miR-154-5p 0 0 1
chr11:72235695|72235986 hsa-miR-154-3p 0 0 1
chr11:72235695|72235986 hsa-miR-488-5p 0 0 1
chr11:72235695|72235986 hsa-miR-488-3p 0 0 1
chr11:72235695|72235986 hsa-miR-610 0 0 1
chr11:72235695|72235986 hsa-miR-619-5p 0 0 1
chr11:72235695|72235986 hsa-miR-619-3p 0 0 1
chr11:72235695|72235986 hsa-miR-637 1 1 1
chr11:72235695|72235986 hsa-miR-646 0 1 1
chr11:72235695|72235986 hsa-miR-653-5p 0 0 1
chr11:72235695|72235986 hsa-miR-653-3p 0 0 1
chr11:72235695|72235986 hsa-miR-766-5p 0 0 1
chr11:72235695|72235986 hsa-miR-766-3p 0 0 1
chr11:72235695|72235986 hsa-miR-765 0 0 1
chr11:72235695|72235986 hsa-miR-665 0 0 1
chr11:72235695|72235986 hsa-miR-940 1 0 1
chr11:72235695|72235986 hsa-miR-1276 0 0 1
chr11:72235695|72235986 hsa-miR-1827 0 0 1
chr11:72235695|72235986 hsa-miR-125a-3p 0 1 1
chr11:72235695|72235986 hsa-miR-324-5p 0 0 1
chr11:72235695|72235986 hsa-miR-361-3p 0 1 1
chr11:72235695|72235986 hsa-miR-513a-5p 0 0 1
chr11:72235695|72235986 hsa-miR-1207-5p 0 0 1
chr11:72235695|72235986 hsa-miR-548b-3p 0 0 1
chr11:72235695|72235986 hsa-miR-1233 0 0 1
chr11:72235695|72235986 hsa-miR-129-3p 0 0 1
chr11:72235695|72235986 hsa-miR-661 1 0 0
chr11:72235695|72235986 hsa-miR-762 1 0 0
chr11:72235695|72235986 hsa-miR-1976 0 1 0
chr11:72235695|72235986 hsa-miR-3154 1 0 0
chr11:72235695|72235986 hsa-miR-4298 1 0 0
chr11:72235695|72235986 hsa-miR-4260 1 0 0
chr11:72235695|72235986 hsa-miR-4270 0 1 0
chr11:72235695|72235986 hsa-miR-3621 1 0 0
chr11:72235695|72235986 hsa-miR-3943 0 1 0
chr11:72235695|72235986 hsa-miR-4510 0 1 0
chr11:72235695|72235986 hsa-miR-4537 1 0 0
chr11:72235695|72235986 hsa-miR-4656 1 0 0
chr11:72235695|72235986 hsa-miR-4675 1 1 0
chr11:72235695|72235986 hsa-miR-4739 1 0 0
chr11:72235695|72235986 hsa-miR-4741 1 0 0
chr11:72235695|72235986 hsa-miR-4780 0 1 0
chr11:72235695|72235986 hsa-miR-6085 1 0 0
chr11:72235695|72235986 hsa-miR-6086 1 0 0
chr11:72235695|72235986 hsa-miR-6090 1 0 0
chr11:72235695|72235986 hsa-miR-6129 0 1 0
chr11:72235695|72235986 hsa-miR-7150 0 1 0
chr11:72235695|72235986 hsa-miR-7974 0 1 0
chr11:72235695|72235986 hsa-miR-8073 1 1 0
chr11:72235695|72235986 hsa-miR-9899 1 0 0
chr11:72235695|72235986 hsa-miR-12128 0 1 0
chr11:72235695|72235986 hsa-miR-504-3p 1 0 0
chr11:72235695|72235986 hsa-miR-4726-3p 0 1 0
chr11:72235695|72235986 hsa-miR-6765-5p 1 1 0
chr11:72235695|72235986 hsa-miR-671-5p 1 0 0
chr11:72235695|72235986 hsa-miR-4687-3p 1 0 0
chr11:72235695|72235986 hsa-miR-1233-3p 0 1 0
chr11:72235695|72235986 hsa-miR-1236-5p 1 0 0
chr11:72235695|72235986 hsa-miR-7851-3p 0 1 0
chr11:72235695|72235986 hsa-miR-6089 1 0 0
chr11:72235695|72235986 hsa-miR-4695-5p 1 0 0
chr11:72235695|72235986 hsa-miR-4722-5p 0 1 0
chr11:72235695|72235986 hsa-miR-505-5p 0 1 0
chr11:72235695|72235986 hsa-miR-1301-3p 0 1 0
chr11:72235695|72235986 hsa-miR-7160-5p 1 0 0
chr11:72235695|72235986 hsa-miR-3189-5p 1 1 0
chr11:72235695|72235986 hsa-miR-6873-3p 0 1 0
chr11:72235695|72235986 hsa-miR-6849-3p 0 1 0
chr11:72235695|72235986 hsa-miR-7110-3p 0 1 0
chr11:72235695|72235986 hsa-miR-185-3p 1 0 0
chr11:72235695|72235986 hsa-miR-6829-5p 1 0 0
chr11:72235695|72235986 hsa-miR-6827-5p 1 1 0
chr11:72235695|72235986 hsa-miR-3194-5p 0 1 0
chr11:72235695|72235986 hsa-miR-6852-5p 0 1 0
chr11:72235695|72235986 hsa-miR-3944-3p 1 0 0
chr11:72235695|72235986 hsa-miR-1908-3p 1 0 0
chr11:72235695|72235986 hsa-miR-4640-5p 1 0 0
chr11:72235695|72235986 hsa-miR-4446-3p 1 0 0
chr11:72235695|72235986 hsa-miR-937-5p 1 0 0
chr11:72235695|72235986 hsa-miR-7112-5p 1 0 0
chr11:72235695|72235986 hsa-let-7e-5p 1 0 0
chr11:72235695|72235986 hsa-miR-4758-3p 0 1 0
chr11:72235695|72235986 hsa-miR-2276-5p 0 1 0
chr11:72235695|72235986 hsa-miR-5587-3p 0 1 0
chr11:72235695|72235986 hsa-miR-3162-3p 1 0 0
chr11:72235695|72235986 hsa-miR-4763-3p 1 0 0
chr11:72235695|72235986 hsa-miR-6893-5p 1 1 0
chr11:72235695|72235986 hsa-miR-1343-5p 1 1 0
chr11:72235695|72235986 hsa-miR-6726-5p 1 1 0
chr11:72235695|72235986 hsa-miR-6743-5p 1 0 0
chr11:72235695|72235986 hsa-miR-6752-5p 1 0 0
chr11:72235695|72235986 hsa-miR-6803-5p 1 0 0
chr11:72235695|72235986 hsa-miR-6813-5p 1 0 0
chr11:72235695|72235986 hsa-miR-6722-3p 1 0 0
chr11:72235695|72235986 hsa-miR-6751-5p 1 0 0
chr11:72235695|72235986 hsa-miR-6808-5p 0 1 0
chr11:72235695|72235986 hsa-miR-328-5p 1 0 0
chr11:72235695|72235986 hsa-miR-4685-5p 1 0 0
chr11:72235695|72235986 hsa-miR-6846-5p 1 0 0
chr11:72235695|72235986 hsa-miR-6848-5p 1 0 0
chr11:72235695|72235986 hsa-miR-6858-5p 1 0 0
chr11:72235695|72235986 hsa-miR-6889-5p 0 1 0
chr11:72235695|72235986 hsa-miR-4723-5p 1 1 0
chr11:72235695|72235986 hsa-miR-939-5p 1 0 0
chr11:72235695|72235986 hsa-miR-4758-5p 1 0 0
chr11:72235695|72235986 hsa-miR-6731-5p 1 0 0
chr11:72235695|72235986 hsa-miR-6791-3p 0 1 0
chr11:72235695|72235986 hsa-miR-6790-5p 1 0 0
chr11:72235695|72235986 hsa-miR-6862-3p 1 0 0
chr11:72235695|72235986 hsa-miR-6829-3p 0 1 0
chr11:72235695|72235986 hsa-miR-10392-3p 1 1 0
chr11:72235695|72235986 hsa-miR-4756-5p 0 1 0
chr11:72235695|72235986 hsa-miR-129-1-3p 0 1 0
chr11:72235695|72235986 hsa-miR-129-2-3p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr11:72235695|72235986
ORF Type ORF1
Protein Length 59
Nucleotide Length 180
Protein Sequence LGVKGSSRGAARGGAGGLPVGGGFSGSSNNLESGQEASVKAGLRLPDLPGMHRREMKWG
Nucleotide Sequence CTGGGGGTCAAGGGCTCCTCCCGGGGAGCTGCTCGGGGTGGGGCTGGGGGCCTCCCCGTTGGTGGCGGTTTCTCTGGTTCTTCAAATAACCTGGAGAGCGGGCAGGAGGCCTCTGTGAAGGCTGGCTTGCGGCTCCCTGACCTGCCAGGGATGCACAGGAGAGAGATGAAGTGGGGTTGA
CircID chr11:72235695|72235986
ORF Type ORF2
Protein Length 29
Nucleotide Length 90
Protein Sequence MLGVGLGASPLVAVSLVLQITWRAGRRPL
Nucleotide Sequence CTGCTCGGGGTGGGGCTGGGGGCCTCCCCGTTGGTGGCGGTTTCTCTGGTTCTTCAAATAACCTGGAGAGCGGGCAGGAGGCCTCTGTGA
CircID chr11:72235695|72235986
ORF Type ORF3
Protein Length 36
Nucleotide Length 108
Protein Sequence MPPGTLSYDIQHSPSSPGLLAPSGHRGGFALCSCLI
Nucleotide Sequence ATGCCCCCAGGTACCCTTTCATATGACATTCAACACAGCCCTAGCTCACCTGGGCTCCTGGCTCCCTCGGGACACAGAGGGGGCTTTGCTCTTTGCTCCTGCCTCATC
CircID chr11:72235695|72235986
ORF Type ORF4
Protein Length 38
Nucleotide Length 114
Protein Sequence MTRCPQVPFHMTFNTALAHLGSWLPRDTEGALLFAPAS
Nucleotide Sequence TTGACCAGATGCCCCCAGGTACCCTTTCATATGACATTCAACACAGCCCTAGCTCACCTGGGCTCCTGGCTCCCTCGGGACACAGAGGGGGCTTTGCTCTTTGCTCCTGCCTCA
CircID chr11:72235695|72235986
ORF Type ORF5
Protein Length 58
Nucleotide Length 177
Protein Sequence MVNPTSSLSCASLAGQGAASQPSQRPPARSPGYLKNQRNRHQRGGPQPHPEQLPGRSP
Nucleotide Sequence CTGGTCAACCCCACTTCATCTCTCTCCTGTGCATCCCTGGCAGGTCAGGGAGCCGCAAGCCAGCCTTCACAGAGGCCTCCTGCCCGCTCTCCAGGTTATTTGAAGAACCAGAGAAACCGCCACCAACGGGGAGGCCCCCAGCCCCACCCCGAGCAGCTCCCCGGGAGGAGCCCTTGA
CircID chr11:72235695|72235986
ORF Type ORF6
Protein Length 25
Nucleotide Length 78
Protein Sequence MRQEQRAKPPLCPEGARSPGELGLC
Nucleotide Sequence ATGAGGCAGGAGCAAAGAGCAAAGCCCCCTCTGTGTCCCGAGGGAGCCAGGAGCCCAGGTGAGCTAGGGCTGTGTTGA
CircID chr11:72235695|72235986
ORF Type ORF7
Protein Length 43
Nucleotide Length 132
Protein Sequence MSYERVPGGIWSTPLHLSPVHPWQVREPQASLHRGLLPALQVI
Nucleotide Sequence ATGTCATATGAAAGGGTACCTGGGGGCATCTGGTCAACCCCACTTCATCTCTCTCCTGTGCATCCCTGGCAGGTCAGGGAGCCGCAAGCCAGCCTTCACAGAGGCCTCCTGCCCGCTCTCCAGGTTATTTGA
CircID chr11:72235695|72235986
ORF Type ORF8
Protein Length 68
Nucleotide Length 204
Protein Sequence MKGYLGASGQPHFISLLCIPGRSGSRKPAFTEASCPLSRLFEEPEKPPPTGRPPAPPRAAPREEPLTP
Nucleotide Sequence ATGAAAGGGTACCTGGGGGCATCTGGTCAACCCCACTTCATCTCTCTCCTGTGCATCCCTGGCAGGTCAGGGAGCCGCAAGCCAGCCTTCACAGAGGCCTCCTGCCCGCTCTCCAGGTTATTTGAAGAACCAGAGAAACCGCCACCAACGGGGAGGCCCCCAGCCCCACCCCGAGCAGCTCCCCGGGAGGAGCCCTTGACCCCC
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab