CircRNA Information

General Information
circRNA Basic Information
CircID chr11:72780588|72780886
Strand +
CircType exon
Host Gene ENSG00000214530.6;
Algorism CIRI2;
Sequence CTGGCTGTATATCTGGGCCCAGAGAGAGTCTCCTTCCAGGGACCGGGAGGAGACACAGTCTGCTGGGCCAAGCCCCATCACACAGATGGGCCAACCGAGGCCTGGAGAGCAGGAGTGACTCACCCTGCCTCTCTCAGCTGGAACCCAGGCTTCTGCATGCCCCTGCCTGTTCCAGGGATCTGGGCTGCTGCCAGGCCCTTCTAGGAGAGTGGTCTCCCTCAGGGACCCCTCTGCTGGGGAAGCCTGCACCTGGTTCCTGACTTGAGTTACTCCAGGTGGGAGACTGGGCCCTTCTCTCC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr11:72780588|72780886 hsa-miR-150-5p 0 0 1
chr11:72780588|72780886 hsa-miR-150-3p 0 0 1
chr11:72780588|72780886 hsa-miR-185-5p 0 0 1
chr11:72780588|72780886 hsa-miR-185-3p 0 0 1
chr11:72780588|72780886 hsa-miR-370-5p 0 0 1
chr11:72780588|72780886 hsa-miR-370-3p 0 0 1
chr11:72780588|72780886 hsa-miR-328-5p 0 0 1
chr11:72780588|72780886 hsa-miR-328-3p 0 0 1
chr11:72780588|72780886 hsa-miR-326 0 1 1
chr11:72780588|72780886 hsa-miR-612 0 0 1
chr11:72780588|72780886 hsa-miR-619-5p 0 0 1
chr11:72780588|72780886 hsa-miR-619-3p 0 0 1
chr11:72780588|72780886 hsa-miR-661 0 1 1
chr11:72780588|72780886 hsa-miR-668-5p 0 0 1
chr11:72780588|72780886 hsa-miR-668-3p 0 0 1
chr11:72780588|72780886 hsa-miR-766-5p 0 0 1
chr11:72780588|72780886 hsa-miR-766-3p 0 0 1
chr11:72780588|72780886 hsa-miR-298 1 1 1
chr11:72780588|72780886 hsa-miR-892a 0 1 1
chr11:72780588|72780886 hsa-miR-873-5p 0 0 1
chr11:72780588|72780886 hsa-miR-873-3p 0 0 1
chr11:72780588|72780886 hsa-miR-922 0 0 1
chr11:72780588|72780886 hsa-miR-940 0 1 1
chr11:72780588|72780886 hsa-miR-1827 0 0 1
chr11:72780588|72780886 hsa-miR-296-5p 0 0 1
chr11:72780588|72780886 hsa-miR-532-3p 0 0 1
chr11:72780588|72780886 hsa-miR-615-5p 0 1 1
chr11:72780588|72780886 hsa-miR-885-3p 0 0 1
chr11:72780588|72780886 hsa-miR-1224-3p 0 0 1
chr11:72780588|72780886 hsa-miR-1207-5p 1 1 1
chr11:72780588|72780886 hsa-miR-125a-5p 0 0 1
chr11:72780588|72780886 hsa-miR-483-3p 0 1 1
chr11:72780588|72780886 hsa-miR-330-5p 0 1 1
chr11:72780588|72780886 hsa-miR-1260 0 0 1
chr11:72780588|72780886 hsa-miR-1280 0 0 1
chr11:72780588|72780886 hsa-miR-125b 0 0 1
chr11:72780588|72780886 hsa-miR-1285 0 0 1
chr11:72780588|72780886 hsa-miR-663a 1 0 0
chr11:72780588|72780886 hsa-miR-764 0 1 0
chr11:72780588|72780886 hsa-miR-1471 1 0 0
chr11:72780588|72780886 hsa-miR-1976 0 1 0
chr11:72780588|72780886 hsa-miR-2861 1 1 0
chr11:72780588|72780886 hsa-miR-544b 0 1 0
chr11:72780588|72780886 hsa-miR-3154 0 1 0
chr11:72780588|72780886 hsa-miR-4298 1 1 0
chr11:72780588|72780886 hsa-miR-4306 0 1 0
chr11:72780588|72780886 hsa-miR-4308 0 1 0
chr11:72780588|72780886 hsa-miR-4254 0 1 0
chr11:72780588|72780886 hsa-miR-4279 0 1 0
chr11:72780588|72780886 hsa-miR-1268b 1 0 0
chr11:72780588|72780886 hsa-miR-4466 1 0 0
chr11:72780588|72780886 hsa-miR-4494 0 1 0
chr11:72780588|72780886 hsa-miR-4512 0 1 0
chr11:72780588|72780886 hsa-miR-4530 0 1 0
chr11:72780588|72780886 hsa-miR-4533 0 1 0
chr11:72780588|72780886 hsa-miR-4656 1 0 0
chr11:72780588|72780886 hsa-miR-4688 1 1 0
chr11:72780588|72780886 hsa-miR-4692 0 1 0
chr11:72780588|72780886 hsa-miR-5194 0 1 0
chr11:72780588|72780886 hsa-miR-5787 1 0 0
chr11:72780588|72780886 hsa-miR-6133 0 1 0
chr11:72780588|72780886 hsa-miR-7150 1 0 0
chr11:72780588|72780886 hsa-miR-8073 0 1 0
chr11:72780588|72780886 hsa-miR-12125 0 1 0
chr11:72780588|72780886 hsa-miR-26b-3p 0 1 0
chr11:72780588|72780886 hsa-miR-6749-3p 0 1 0
chr11:72780588|72780886 hsa-miR-6861-5p 1 0 0
chr11:72780588|72780886 hsa-miR-224-5p 0 1 0
chr11:72780588|72780886 hsa-miR-6510-5p 1 0 0
chr11:72780588|72780886 hsa-miR-6089 1 0 0
chr11:72780588|72780886 hsa-miR-4695-5p 1 0 0
chr11:72780588|72780886 hsa-miR-6727-5p 1 0 0
chr11:72780588|72780886 hsa-miR-6721-5p 1 0 0
chr11:72780588|72780886 hsa-miR-432-5p 0 1 0
chr11:72780588|72780886 hsa-miR-7845-5p 1 0 0
chr11:72780588|72780886 hsa-miR-6817-3p 0 1 0
chr11:72780588|72780886 hsa-miR-23a-5p 0 1 0
chr11:72780588|72780886 hsa-miR-6798-5p 1 0 0
chr11:72780588|72780886 hsa-miR-6770-5p 0 1 0
chr11:72780588|72780886 hsa-miR-2467-3p 1 0 0
chr11:72780588|72780886 hsa-miR-4713-5p 0 1 0
chr11:72780588|72780886 hsa-miR-4640-5p 1 0 0
chr11:72780588|72780886 hsa-miR-6742-3p 0 1 0
chr11:72780588|72780886 hsa-miR-7112-5p 1 0 0
chr11:72780588|72780886 hsa-miR-7160-3p 0 1 0
chr11:72780588|72780886 hsa-miR-7152-3p 0 1 0
chr11:72780588|72780886 hsa-miR-3940-3p 0 1 0
chr11:72780588|72780886 hsa-miR-1296-5p 0 1 0
chr11:72780588|72780886 hsa-miR-4746-5p 0 1 0
chr11:72780588|72780886 hsa-miR-6777-3p 1 1 0
chr11:72780588|72780886 hsa-miR-518c-5p 0 1 0
chr11:72780588|72780886 hsa-miR-6761-5p 0 1 0
chr11:72780588|72780886 hsa-miR-3675-5p 0 1 0
chr11:72780588|72780886 hsa-miR-221-5p 0 1 0
chr11:72780588|72780886 hsa-miR-6502-3p 0 1 0
chr11:72780588|72780886 hsa-miR-4763-3p 1 1 0
chr11:72780588|72780886 hsa-miR-6787-5p 1 0 0
chr11:72780588|72780886 hsa-miR-6893-5p 0 1 0
chr11:72780588|72780886 hsa-miR-6775-5p 1 0 0
chr11:72780588|72780886 hsa-miR-6743-5p 1 1 0
chr11:72780588|72780886 hsa-miR-7107-5p 1 0 0
chr11:72780588|72780886 hsa-miR-6808-5p 0 1 0
chr11:72780588|72780886 hsa-miR-6836-5p 1 0 0
chr11:72780588|72780886 hsa-miR-6862-5p 0 1 0
chr11:72780588|72780886 hsa-miR-10396b-5p 1 0 0
chr11:72780588|72780886 hsa-miR-4685-5p 1 0 0
chr11:72780588|72780886 hsa-miR-6731-5p 0 1 0
chr11:72780588|72780886 hsa-miR-6856-5p 0 1 0
chr11:72780588|72780886 hsa-miR-6773-5p 0 1 0
chr11:72780588|72780886 hsa-miR-1914-3p 1 1 0
chr11:72780588|72780886 hsa-miR-6855-5p 0 1 0
chr11:72780588|72780886 hsa-miR-3116 1 0 0
chr11:72780588|72780886 hsa-miR-4747-5p 0 1 0
chr11:72780588|72780886 hsa-miR-6791-5p 1 1 0
chr11:72780588|72780886 hsa-miR-4756-5p 0 1 0
chr11:72780588|72780886 hsa-miR-362-5p 0 1 0
chr11:72780588|72780886 hsa-miR-6811-5p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr11:72780588|72780886
ORF Type ORF1
Protein Length 67
Nucleotide Length 204
Protein Sequence LAVYLGPERVSFQGPGGDTVCWAKPHHTDGPTEAWRAGVTHPASLSWNPGFCMPLPVPGIWAAARPF
Nucleotide Sequence CTGGCTGTATATCTGGGCCCAGAGAGAGTCTCCTTCCAGGGACCGGGAGGAGACACAGTCTGCTGGGCCAAGCCCCATCACACAGATGGGCCAACCGAGGCCTGGAGAGCAGGAGTGACTCACCCTGCCTCTCTCAGCTGGAACCCAGGCTTCTGCATGCCCCTGCCTGTTCCAGGGATCTGGGCTGCTGCCAGGCCCTTCTAG
CircID chr11:72780588|72780886
ORF Type ORF2
Protein Length 37
Nucleotide Length 114
Protein Sequence MYIWAQRESPSRDREETQSAGPSPITQMGQPRPGEQE
Nucleotide Sequence CTGTATATCTGGGCCCAGAGAGAGTCTCCTTCCAGGGACCGGGAGGAGACACAGTCTGCTGGGCCAAGCCCCATCACACAGATGGGCCAACCGAGGCCTGGAGAGCAGGAGTGA
CircID chr11:72780588|72780886
ORF Type ORF3
Protein Length 46
Nucleotide Length 141
Protein Sequence MPLSAGTQASACPCLFQGSGLLPGPSRRVVSLRDPSAGEACTWFLT
Nucleotide Sequence CTGCCTCTCTCAGCTGGAACCCAGGCTTCTGCATGCCCCTGCCTGTTCCAGGGATCTGGGCTGCTGCCAGGCCCTTCTAGGAGAGTGGTCTCCCTCAGGGACCCCTCTGCTGGGGAAGCCTGCACCTGGTTCCTGACTTGA
CircID chr11:72780588|72780886
ORF Type ORF4
Protein Length 66
Nucleotide Length 201
Protein Sequence MLGQAPSHRWANRGLESRSDSPCLSQLEPRLLHAPACSRDLGCCQALLGEWSPSGTPLLGKPAPGS
Nucleotide Sequence CTGCTGGGCCAAGCCCCATCACACAGATGGGCCAACCGAGGCCTGGAGAGCAGGAGTGACTCACCCTGCCTCTCTCAGCTGGAACCCAGGCTTCTGCATGCCCCTGCCTGTTCCAGGGATCTGGGCTGCTGCCAGGCCCTTCTAGGAGAGTGGTCTCCCTCAGGGACCCCTCTGCTGGGGAAGCCTGCACCTGGTTCCTGA
CircID chr11:72780588|72780886
ORF Type ORF5
Protein Length 37
Nucleotide Length 111
Protein Sequence MLSRPRLAHLCDGAWPSRLCLLPVPGRRLSLGPDIQP
Nucleotide Sequence CTGCTCTCCAGGCCTCGGTTGGCCCATCTGTGTGATGGGGCTTGGCCCAGCAGACTGTGTCTCCTCCCGGTCCCTGGAAGGAGACTCTCTCTGGGCCCAGATATACAGCCA
CircID chr11:72780588|72780886
ORF Type ORF6
Protein Length 74
Nucleotide Length 222
Protein Sequence MRETTLLEGPGSSPDPWNRQGHAEAWVPAERGRVSHSCSPGLGWPICVMGLGPADCVSSRSLEGDSLWAQIYSQ
Nucleotide Sequence CTGAGGGAGACCACTCTCCTAGAAGGGCCTGGCAGCAGCCCAGATCCCTGGAACAGGCAGGGGCATGCAGAAGCCTGGGTTCCAGCTGAGAGAGGCAGGGTGAGTCACTCCTGCTCTCCAGGCCTCGGTTGGCCCATCTGTGTGATGGGGCTTGGCCCAGCAGACTGTGTCTCCTCCCGGTCCCTGGAAGGAGACTCTCTCTGGGCCCAGATATACAGCCAG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab