CircRNA Information

General Information
circRNA Basic Information
CircID chr11:73235368|73235722
Strand +
CircType exon
Host Gene ENSG00000175591.10;
Algorism CIRI2;
Sequence CTGTGACTTGGCCCCCACCCCAGGTAGCTCAGCTCCAGACTCTGGTATGTGATCTTGGTAAGCCACCTTCCTCTCTGGGCCTGTTTCTCCATTTGACTTGATTAGGCTGGACTCCAACCTAGGTACCTTGGCAGTACAGCCAGCTACTTGCATGGGAGTCAGGCCAGGGGTGTCATTGACCTTGAGCTCTTGCCTTTCTTGAAACTTAATTCCCCCAACTTATACACACAAACGATGACTAGGGGTTATGGGAACAGTTGACTCTGGACCACAGAGTGAATATCCTGAGCCCCTGTCAAATGACGGAGCATGGGGTCATCCAGCATGAGTCACTGATGGTCCATATCTGGGGAGA
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr11:73235368|73235722 hsa-miR-31-5p 0 0 1
chr11:73235368|73235722 hsa-miR-31-3p 0 0 1
chr11:73235368|73235722 hsa-miR-198 1 1 1
chr11:73235368|73235722 hsa-miR-224-5p 0 0 1
chr11:73235368|73235722 hsa-miR-224-3p 0 0 1
chr11:73235368|73235722 hsa-miR-382-5p 0 0 1
chr11:73235368|73235722 hsa-miR-382-3p 0 0 1
chr11:73235368|73235722 hsa-miR-335-5p 0 0 1
chr11:73235368|73235722 hsa-miR-335-3p 0 0 1
chr11:73235368|73235722 hsa-miR-345-5p 0 0 1
chr11:73235368|73235722 hsa-miR-345-3p 0 0 1
chr11:73235368|73235722 hsa-miR-425-5p 0 0 1
chr11:73235368|73235722 hsa-miR-425-3p 0 0 1
chr11:73235368|73235722 hsa-miR-498-5p 0 0 1
chr11:73235368|73235722 hsa-miR-498-3p 0 0 1
chr11:73235368|73235722 hsa-miR-562 0 0 1
chr11:73235368|73235722 hsa-miR-568 0 0 1
chr11:73235368|73235722 hsa-miR-579-5p 0 0 1
chr11:73235368|73235722 hsa-miR-579-3p 0 0 1
chr11:73235368|73235722 hsa-miR-599 0 0 1
chr11:73235368|73235722 hsa-miR-608 0 0 1
chr11:73235368|73235722 hsa-miR-610 0 0 1
chr11:73235368|73235722 hsa-miR-619-5p 0 0 1
chr11:73235368|73235722 hsa-miR-619-3p 0 0 1
chr11:73235368|73235722 hsa-miR-625-5p 0 0 1
chr11:73235368|73235722 hsa-miR-625-3p 0 0 1
chr11:73235368|73235722 hsa-miR-1287-5p 0 0 1
chr11:73235368|73235722 hsa-miR-1287-3p 0 0 1
chr11:73235368|73235722 hsa-miR-1255a 0 0 1
chr11:73235368|73235722 hsa-miR-1275 0 0 1
chr11:73235368|73235722 hsa-miR-1282 0 0 1
chr11:73235368|73235722 hsa-miR-1289 0 1 1
chr11:73235368|73235722 hsa-miR-525-5p 0 0 1
chr11:73235368|73235722 hsa-miR-331-3p 0 1 1
chr11:73235368|73235722 hsa-miR-342-5p 0 0 1
chr11:73235368|73235722 hsa-miR-520a-5p 0 0 1
chr11:73235368|73235722 hsa-miR-105 0 0 1
chr11:73235368|73235722 hsa-miR-1255b 0 0 1
chr11:73235368|73235722 hsa-miR-514 0 0 1
chr11:73235368|73235722 hsa-miR-516b 0 0 1
chr11:73235368|73235722 hsa-miR-24 0 0 1
chr11:73235368|73235722 hsa-miR-147 0 0 1
chr11:73235368|73235722 hsa-miR-661 1 0 0
chr11:73235368|73235722 hsa-miR-940 1 0 0
chr11:73235368|73235722 hsa-miR-2110 1 1 0
chr11:73235368|73235722 hsa-miR-3125 0 1 0
chr11:73235368|73235722 hsa-miR-3176 0 1 0
chr11:73235368|73235722 hsa-miR-4309 0 1 0
chr11:73235368|73235722 hsa-miR-4276 0 1 0
chr11:73235368|73235722 hsa-miR-3714 1 0 0
chr11:73235368|73235722 hsa-miR-3911 1 0 0
chr11:73235368|73235722 hsa-miR-3916 0 1 0
chr11:73235368|73235722 hsa-miR-4437 0 1 0
chr11:73235368|73235722 hsa-miR-4484 1 0 0
chr11:73235368|73235722 hsa-miR-2392 1 0 0
chr11:73235368|73235722 hsa-miR-4518 0 1 0
chr11:73235368|73235722 hsa-miR-4533 1 0 0
chr11:73235368|73235722 hsa-miR-4651 0 1 0
chr11:73235368|73235722 hsa-miR-4663 0 1 0
chr11:73235368|73235722 hsa-miR-4739 1 0 0
chr11:73235368|73235722 hsa-miR-5190 1 1 0
chr11:73235368|73235722 hsa-miR-5572 1 0 0
chr11:73235368|73235722 hsa-miR-6086 1 0 0
chr11:73235368|73235722 hsa-miR-8089 1 0 0
chr11:73235368|73235722 hsa-miR-7155-5p 1 1 0
chr11:73235368|73235722 hsa-miR-3150a-3p 1 0 0
chr11:73235368|73235722 hsa-miR-6894-5p 1 0 0
chr11:73235368|73235722 hsa-miR-6799-5p 1 0 0
chr11:73235368|73235722 hsa-miR-139-3p 1 0 0
chr11:73235368|73235722 hsa-miR-6867-5p 1 0 0
chr11:73235368|73235722 hsa-miR-3064-5p 0 1 0
chr11:73235368|73235722 hsa-miR-5589-5p 0 1 0
chr11:73235368|73235722 hsa-miR-6742-5p 1 0 0
chr11:73235368|73235722 hsa-miR-6716-5p 1 0 0
chr11:73235368|73235722 hsa-miR-3180-3p 1 0 0
chr11:73235368|73235722 hsa-miR-4697-3p 1 1 0
chr11:73235368|73235722 hsa-miR-6782-5p 1 1 0
chr11:73235368|73235722 hsa-miR-3934-3p 0 1 0
chr11:73235368|73235722 hsa-miR-5088-5p 0 1 0
chr11:73235368|73235722 hsa-miR-3944-3p 1 0 0
chr11:73235368|73235722 hsa-miR-488-5p 0 1 0
chr11:73235368|73235722 hsa-miR-6786-3p 0 1 0
chr11:73235368|73235722 hsa-miR-4715-5p 0 1 0
chr11:73235368|73235722 hsa-miR-5010-5p 1 0 0
chr11:73235368|73235722 hsa-miR-3619-3p 0 1 0
chr11:73235368|73235722 hsa-miR-4999-5p 0 1 0
chr11:73235368|73235722 hsa-miR-4703-3p 0 1 0
chr11:73235368|73235722 hsa-miR-2355-5p 0 1 0
chr11:73235368|73235722 hsa-miR-28-5p 0 1 0
chr11:73235368|73235722 hsa-miR-4283 0 1 0
chr11:73235368|73235722 hsa-miR-876-3p 0 1 0
chr11:73235368|73235722 hsa-miR-2116-3p 0 1 0
chr11:73235368|73235722 hsa-miR-1244 0 1 0
chr11:73235368|73235722 hsa-miR-5007-5p 0 1 0
chr11:73235368|73235722 hsa-miR-299-5p 1 0 0
chr11:73235368|73235722 hsa-miR-6812-5p 1 0 0
chr11:73235368|73235722 hsa-miR-6737-5p 1 1 0
chr11:73235368|73235722 hsa-miR-6752-5p 1 0 0
chr11:73235368|73235722 hsa-miR-6756-5p 0 1 0
chr11:73235368|73235722 hsa-miR-6803-5p 1 0 0
chr11:73235368|73235722 hsa-miR-6813-5p 0 1 0
chr11:73235368|73235722 hsa-miR-6815-5p 1 0 0
chr11:73235368|73235722 hsa-miR-6819-5p 1 1 0
chr11:73235368|73235722 hsa-miR-6842-5p 1 0 0
chr11:73235368|73235722 hsa-miR-6851-5p 1 0 0
chr11:73235368|73235722 hsa-miR-7107-5p 1 0 0
chr11:73235368|73235722 hsa-miR-7110-5p 1 0 0
chr11:73235368|73235722 hsa-miR-6751-5p 1 0 0
chr11:73235368|73235722 hsa-miR-7111-5p 1 0 0
chr11:73235368|73235722 hsa-miR-6780b-5p 1 0 0
chr11:73235368|73235722 hsa-miR-1909-3p 0 1 0
chr11:73235368|73235722 hsa-miR-4726-5p 1 0 0
chr11:73235368|73235722 hsa-miR-6795-5p 1 0 0
chr11:73235368|73235722 hsa-miR-6848-5p 1 0 0
chr11:73235368|73235722 hsa-miR-6887-5p 1 0 0
chr11:73235368|73235722 hsa-miR-4723-5p 1 0 0
chr11:73235368|73235722 hsa-miR-6845-5p 0 1 0
chr11:73235368|73235722 hsa-miR-939-5p 1 0 0
chr11:73235368|73235722 hsa-miR-3198 1 1 0
chr11:73235368|73235722 hsa-miR-6856-5p 1 1 0
chr11:73235368|73235722 hsa-miR-4665-5p 1 0 0
chr11:73235368|73235722 hsa-miR-6766-5p 0 1 0
chr11:73235368|73235722 hsa-miR-6791-5p 1 0 0
chr11:73235368|73235722 hsa-miR-6762-5p 0 1 0
chr11:73235368|73235722 hsa-miR-3085-3p 0 1 0
chr11:73235368|73235722 hsa-miR-6859-5p 0 1 0
chr11:73235368|73235722 hsa-miR-6764-5p 1 0 0
chr11:73235368|73235722 hsa-miR-6504-5p 0 1 0
chr11:73235368|73235722 hsa-miR-3922-3p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr11:73235368|73235722
ORF Type ORF1
Protein Length 37
Nucleotide Length 114
Protein Sequence MHGSQARGVIDLELLPFLKLNSPNLYTQTMTRGYGNS
Nucleotide Sequence TTGCATGGGAGTCAGGCCAGGGGTGTCATTGACCTTGAGCTCTTGCCTTTCTTGAAACTTAATTCCCCCAACTTATACACACAAACGATGACTAGGGGTTATGGGAACAGTTGA
CircID chr11:73235368|73235722
ORF Type ORF2
Protein Length 34
Nucleotide Length 105
Protein Sequence MIRLDSNLGTLAVQPATCMGVRPGVSLTLSSCLS
Nucleotide Sequence TTGATTAGGCTGGACTCCAACCTAGGTACCTTGGCAGTACAGCCAGCTACTTGCATGGGAGTCAGGCCAGGGGTGTCATTGACCTTGAGCTCTTGCCTTTCTTGA
CircID chr11:73235368|73235722
ORF Type ORF3
Protein Length 26
Nucleotide Length 81
Protein Sequence MGTVDSGPQSEYPEPLSNDGAWGHPA
Nucleotide Sequence ATGGGAACAGTTGACTCTGGACCACAGAGTGAATATCCTGAGCCCCTGTCAAATGACGGAGCATGGGGTCATCCAGCATGA
CircID chr11:73235368|73235722
ORF Type ORF4
Protein Length 32
Nucleotide Length 96
Protein Sequence MTLDHRVNILSPCQMTEHGVIQHESLMVHIWG
Nucleotide Sequence TTGACTCTGGACCACAGAGTGAATATCCTGAGCCCCTGTCAAATGACGGAGCATGGGGTCATCCAGCATGAGTCACTGATGGTCCATATCTGGGGA
CircID chr11:73235368|73235722
ORF Type ORF5
Protein Length 54
Nucleotide Length 162
Protein Sequence MTPMQVAGCTAKVPRLESSLIKSNGETGPERKVAYQDHIPESGAELPGVGAKSQ
Nucleotide Sequence CTGACTCCCATGCAAGTAGCTGGCTGTACTGCCAAGGTACCTAGGTTGGAGTCCAGCCTAATCAAGTCAAATGGAGAAACAGGCCCAGAGAGGAAGGTGGCTTACCAAGATCACATACCAGAGTCTGGAGCTGAGCTACCTGGGGTGGGGGCCAAGTCACAG
CircID chr11:73235368|73235722
ORF Type ORF6
Protein Length 26
Nucleotide Length 81
Protein Sequence MLDDPMLRHLTGAQDIHSVVQSQLFP
Nucleotide Sequence ATGCTGGATGACCCCATGCTCCGTCATTTGACAGGGGCTCAGGATATTCACTCTGTGGTCCAGAGTCAACTGTTCCCATAA
CircID chr11:73235368|73235722
ORF Type ORF7
Protein Length 30
Nucleotide Length 90
Protein Sequence MEKQAQRGRWLTKITYQSLELSYLGWGPSH
Nucleotide Sequence ATGGAGAAACAGGCCCAGAGAGGAAGGTGGCTTACCAAGATCACATACCAGAGTCTGGAGCTGAGCTACCTGGGGTGGGGGCCAAGTCAC
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab