CircRNA Information

General Information
circRNA Basic Information
CircID chr11:75193218|75200387
Strand +
CircType exon
Host Gene ENSG00000137491.14;
Algorism find_circ;CIRI2;DCC;
Sequence TCTTCCCCAGGGTGCTGCTGCAGACCCTACGCCACCCCATCTTCCTGCTGGTGGTCCTGTCCCAGGTATGCTTGTCATCCATGGCTGCGGGCATGGCCACCTTCCTGCCCAAGTTCCTGGAGCGCCAGTTTTCCATCACAGCCTCCTACGCCAACCTGCTCATCGGCTGCCTCTCCTTCCCTTCGGTCATCGTGGGCATCGTGGTGGGTGGCGTCCTGGTCAAGCGGCTCCACCTGGGCCCTGTGGGATGCGGTGCCCTTTGCCTGCTGGGGATGCTGCTGTGCCTCTTCTTCAGCCTGCCGCTCTTCTTTATCGGCTGCTCCAGCCACCAGATTGCGGGCATCACACACCAGACCAGGTAGAAGGGTCACTGAGGTGCAGAGATGTTTGAAGAAGCTCAAAGGCTTGTAGGATTGAGGGGGCCTGTCTCCATACTTGCCCACCTTCATTGCAAGGAGCTCACTATCACGCCATCATCGGGCAGCCCTGATGATGAAAATCCTCTGTGTGGAGCTGAAATCTCTGGCCATTGCTCTCGGCTACAGGGCCGAGGATGCCCCAGCTAGTGGCCTAAGGGAGGGAAGCCAGGCCAACCCTACTGGTCTTCTCTCCCACCAGTGCCCACCCTGGGCTGGAGCTGTCTCCAAGCTGCATGGAGGCCTGCTCCTGCCCATTGGACGGCTTTAACCCTGTCTGCGACCCCAGCACTCGTGTGGAATACATCACACCCTGCCACGCAGGCTGCTCAAGCTGGGTGGTCCAGGATGCTCTGGACAACAGCCAGTGTCTGCAGCTGCCAGGGCTGGAGGTGAGAGGCCCAGAGGGCTCCAGCTGTCCAGGCCAGCCAGCCACTTCAAGGGTTGATGGGACTAATCCCTGCACACCTGTCTCCCATCTGAGGCCCTGTGTGGCTGGGGCACATGAGTCTAGAAGCTCTGGTCTATGGGAAAGCAAAGAGAAGCCCAGGCCTCTTGGCTTGGGCTGGCTTCTATCGGGTGCCTGTGAGCCCTGGCAGTCCAGATCACTTCGCAGAGTCCTTGGCTGGAGGTTTTCCTCGCTACCTAGGGAGTGAGTGCAGGCTGGGATCAAACACTCCAGGGGGCAAGCCCGGGGACATGGCCAGCCTGGGGATGTTTTCTTACAGTTGGTGTGTAGAATGTGGGGGAATGATGCTCTCCTGGCTCCCTCCCTCTTCTTCTCTACTTTCTCTCTGCTTCCCTCTCCCTGCCCACCACCTCAGCCCAGGCTCAACTTGCACATAGACAGCCCTTGAGGTGCCTGCTCCTCAAGCCGTCTTTGCTCAGCCAACGGGTCACGATCTCGGACTCCCAGCCAGCTCTACCCCAACTGGCTGTGGAACTTGGGCCTCTCACAAGCCTTCCCCGCTGCAAGCCCTTGGCCAGCTGCCTGCCCTTGGAGGCTCTTGAAGTCTCTTCCTCCTCTTCCCACTCCAGGTTTTCTACACCAACTGCAGCTGCGTGGTGGAGGGCAACCCCGTGCTGGCAGGATCCTGCGACTCAACGTGCAGCCATCTGGTGGTGCCCTTCCTGCTCCTGGTCAGCCTGGGCTCGGCCCTGGCCTGTCTCACCCACACACCCTCCTTCATGCTCATCCTAAG
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr11:75193218|75200387 hsa-miR-103a-2-5p 0 1 1
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr11:75193218|75200387
ORF Type ORF1
Protein Length 140
Nucleotide Length 420
Protein Sequence MEACSCPLDGFNPVCDPSTRVEYITPCHAGCSSWVVQDALDNSQCLQLPGLEVRGPEGSSCPGQPATSRVDGTNPCTPVSHLRPCVAGAHESRSSGLWESKEKPRPLGLGWLLSGACEPWQSRSLRRVLGWRFSSLPRE*
Nucleotide Sequence ATGGAGGCCTGCTCCTGCCCATTGGACGGCTTTAACCCTGTCTGCGACCCCAGCACTCGTGTGGAATACATCACACCCTGCCACGCAGGCTGCTCAAGCTGGGTGGTCCAGGATGCTCTGGACAACAGCCAGTGTCTGCAGCTGCCAGGGCTGGAGGTGAGAGGCCCAGAGGGCTCCAGCTGTCCAGGCCAGCCAGCCACTTCAAGGGTTGATGGGACTAATCCCTGCACACCTGTCTCCCATCTGAGGCCCTGTGTGGCTGGGGCACATGAGTCTAGAAGCTCTGGTCTATGGGAAAGCAAAGAGAAGCCCAGGCCTCTTGGCTTGGGCTGGCTTCTATCGGGTGCCTGTGAGCCCTGGCAGTCCAGATCACTTCGCAGAGTCCTTGGCTGGAGGTTTTCCTCGCTACCTAGGGAGTGA
CircID chr11:75193218|75200387
ORF Type ORF2
Protein Length 125
Nucleotide Length 375
Protein Sequence MKVGKYGDRPPQSYKPLSFFKHLCTSVTLLPGLVCDARNLVAGAADKEERQAEEEAQQHPQQAKGTASHRAQVEPLDQDATHHDAHDDRREGEAADEQVGVGGCDGKLALQELGQEGGHARSHG*
Nucleotide Sequence ATGAAGGTGGGCAAGTATGGAGACAGGCCCCCTCAATCCTACAAGCCTTTGAGCTTCTTCAAACATCTCTGCACCTCAGTGACCCTTCTACCTGGTCTGGTGTGTGATGCCCGCAATCTGGTGGCTGGAGCAGCCGATAAAGAAGAGCGGCAGGCTGAAGAAGAGGCACAGCAGCATCCCCAGCAGGCAAAGGGCACCGCATCCCACAGGGCCCAGGTGGAGCCGCTTGACCAGGACGCCACCCACCACGATGCCCACGATGACCGAAGGGAAGGAGAGGCAGCCGATGAGCAGGTTGGCGTAGGAGGCTGTGATGGAAAACTGGCGCTCCAGGAACTTGGGCAGGAAGGTGGCCATGCCCGCAGCCATGGATGA
CircID chr11:75193218|75200387
ORF Type ORF3
Protein Length 173
Nucleotide Length 519
Protein Sequence LIPACTHSLGSEENLQPRTLRSDLDCQGSQAPDRSQPKPRGLGFSLLSHRPELLDSCAPATQGLRWETGVQGLVPSTLEVAGWPGQLEPSGPLTSSPGSCRHWLLSRASWTTQLEQPAWQGVMYSTRVLGSQTGLKPSNGQEQASMQLGDSSSPGWALVGEKTSRVGLASLP*
Nucleotide Sequence TTGATCCCAGCCTGCACTCACTCCCTAGGTAGCGAGGAAAACCTCCAGCCAAGGACTCTGCGAAGTGATCTGGACTGCCAGGGCTCACAGGCACCCGATAGAAGCCAGCCCAAGCCAAGAGGCCTGGGCTTCTCTTTGCTTTCCCATAGACCAGAGCTTCTAGACTCATGTGCCCCAGCCACACAGGGCCTCAGATGGGAGACAGGTGTGCAGGGATTAGTCCCATCAACCCTTGAAGTGGCTGGCTGGCCTGGACAGCTGGAGCCCTCTGGGCCTCTCACCTCCAGCCCTGGCAGCTGCAGACACTGGCTGTTGTCCAGAGCATCCTGGACCACCCAGCTTGAGCAGCCTGCGTGGCAGGGTGTGATGTATTCCACACGAGTGCTGGGGTCGCAGACAGGGTTAAAGCCGTCCAATGGGCAGGAGCAGGCCTCCATGCAGCTTGGAGACAGCTCCAGCCCAGGGTGGGCACTGGTGGGAGAGAAGACCAGTAGGGTTGGCCTGGCTTCCCTCCCTTAG
CircID chr11:75193218|75200387
ORF Type ORF4
Protein Length 114
Nucleotide Length 342
Protein Sequence MSLEALVYGKAKRSPGLLAWAGFYRVPVSPGSPDHFAESLAGGFPRYLGSECRLGSNTPGGKPGDMASLGMFSYSWCVECGGMMLSWLPPSSSLLSLCFPLPAHHLSPGSTCT*
Nucleotide Sequence ATGAGTCTAGAAGCTCTGGTCTATGGGAAAGCAAAGAGAAGCCCAGGCCTCTTGGCTTGGGCTGGCTTCTATCGGGTGCCTGTGAGCCCTGGCAGTCCAGATCACTTCGCAGAGTCCTTGGCTGGAGGTTTTCCTCGCTACCTAGGGAGTGAGTGCAGGCTGGGATCAAACACTCCAGGGGGCAAGCCCGGGGACATGGCCAGCCTGGGGATGTTTTCTTACAGTTGGTGTGTAGAATGTGGGGGAATGATGCTCTCCTGGCTCCCTCCCTCTTCTTCTCTACTTTCTCTCTGCTTCCCTCTCCCTGCCCACCACCTCAGCCCAGGCTCAACTTGCACATAG
CircID chr11:75193218|75200387
ORF Type ORF5
Protein Length 108
Nucleotide Length 324
Protein Sequence MLVIHGCGHGHLPAQVPGAPVFHHSLLRQPAHRLPLLPFGHRGHRGGWRPGQAAPPGPCGMRCPLPAGDAAVPLLQPAALLYRLLQPPDCGHHTPDQVEGSLRCRDV*
Nucleotide Sequence ATGCTTGTCATCCATGGCTGCGGGCATGGCCACCTTCCTGCCCAAGTTCCTGGAGCGCCAGTTTTCCATCACAGCCTCCTACGCCAACCTGCTCATCGGCTGCCTCTCCTTCCCTTCGGTCATCGTGGGCATCGTGGTGGGTGGCGTCCTGGTCAAGCGGCTCCACCTGGGCCCTGTGGGATGCGGTGCCCTTTGCCTGCTGGGGATGCTGCTGTGCCTCTTCTTCAGCCTGCCGCTCTTCTTTATCGGCTGCTCCAGCCACCAGATTGCGGGCATCACACACCAGACCAGGTAGAAGGGTCACTGAGGTGCAGAGATGTTTGA
CircID chr11:75193218|75200387
ORF Type ORF6
Protein Length 94
Nucleotide Length 282
Protein Sequence MAAGMATFLPKFLERQFSITASYANLLIGCLSFPSVIVGIVVGGVLVKRLHLGPVGCGALCLLGMLLCLFFSLPLFFIGCSSHQIAGITHQTR*
Nucleotide Sequence ATGGCTGCGGGCATGGCCACCTTCCTGCCCAAGTTCCTGGAGCGCCAGTTTTCCATCACAGCCTCCTACGCCAACCTGCTCATCGGCTGCCTCTCCTTCCCTTCGGTCATCGTGGGCATCGTGGTGGGTGGCGTCCTGGTCAAGCGGCTCCACCTGGGCCCTGTGGGATGCGGTGCCCTTTGCCTGCTGGGGATGCTGCTGTGCCTCTTCTTCAGCCTGCCGCTCTTCTTTATCGGCTGCTCCAGCCACCAGATTGCGGGCATCACACACCAGACCAGGTAG
CircID chr11:75193218|75200387
ORF Type ORF7
Protein Length 116
Nucleotide Length 348
Protein Sequence LRCLLLKPSLLSQRVTISDSQPALPQLAVELGPLTSLPRCKPLASCLPLEALEVSSSSSHSRFSTPTAAAWWRATPCWQDPATQRAAIWWCPSCSWSAWARPWPVSPTHPPSCSS*
Nucleotide Sequence TTGAGGTGCCTGCTCCTCAAGCCGTCTTTGCTCAGCCAACGGGTCACGATCTCGGACTCCCAGCCAGCTCTACCCCAACTGGCTGTGGAACTTGGGCCTCTCACAAGCCTTCCCCGCTGCAAGCCCTTGGCCAGCTGCCTGCCCTTGGAGGCTCTTGAAGTCTCTTCCTCCTCTTCCCACTCCAGGTTTTCTACACCAACTGCAGCTGCGTGGTGGAGGGCAACCCCGTGCTGGCAGGATCCTGCGACTCAACGTGCAGCCATCTGGTGGTGCCCTTCCTGCTCCTGGTCAGCCTGGGCTCGGCCCTGGCCTGTCTCACCCACACACCCTCCTTCATGCTCATCCTAA
CircID chr11:75193218|75200387
ORF Type ORF8
Protein Length 66
Nucleotide Length 198
Protein Sequence MPAIWWLEQPIKKSGRLKKRHSSIPSRQRAPHPTGPRWSRLTRTPPTTMPTMTEGKERQPMSRLA*
Nucleotide Sequence ATGCCCGCAATCTGGTGGCTGGAGCAGCCGATAAAGAAGAGCGGCAGGCTGAAGAAGAGGCACAGCAGCATCCCCAGCAGGCAAAGGGCACCGCATCCCACAGGGCCCAGGTGGAGCCGCTTGACCAGGACGCCACCCACCACGATGCCCACGATGACCGAAGGGAAGGAGAGGCAGCCGATGAGCAGGTTGGCGTAG
CircID chr11:75193218|75200387
ORF Type ORF9
Protein Length 66
Nucleotide Length 198
Protein Sequence MMKILCVELKSLAIALGYRAEDAPASGLREGSQANPTGLLSHQCPPWAGAVSKLHGGLLLPIGRL*
Nucleotide Sequence ATGATGAAAATCCTCTGTGTGGAGCTGAAATCTCTGGCCATTGCTCTCGGCTACAGGGCCGAGGATGCCCCAGCTAGTGGCCTAAGGGAGGGAAGCCAGGCCAACCCTACTGGTCTTCTCTCCCACCAGTGCCCACCCTGGGCTGGAGCTGTCTCCAAGCTGCATGGAGGCCTGCTCCTGCCCATTGGACGGCTTTAA
CircID chr11:75193218|75200387
ORF Type ORF10
Protein Length 61
Nucleotide Length 183
Protein Sequence MFEEAQRLVGLRGPVSILAHLHCKELTITPSSGSPDDENPLCGAEISGHCSRLQGRGCPS*
Nucleotide Sequence ATGTTTGAAGAAGCTCAAAGGCTTGTAGGATTGAGGGGGCCTGTCTCCATACTTGCCCACCTTCATTGCAAGGAGCTCACTATCACGCCATCATCGGGCAGCCCTGATGATGAAAATCCTCTGTGTGGAGCTGAAATCTCTGGCCATTGCTCTCGGCTACAGGGCCGAGGATGCCCCAGCTAG
CircID chr11:75193218|75200387
ORF Type ORF11
Protein Length 51
Nucleotide Length 153
Protein Sequence MSMKEGVWVRQARAEPRLTRSRKGTTRWLHVESQDPASTGLPSTTQLQLV*
Nucleotide Sequence ATGAGCATGAAGGAGGGTGTGTGGGTGAGACAGGCCAGGGCCGAGCCCAGGCTGACCAGGAGCAGGAAGGGCACCACCAGATGGCTGCACGTTGAGTCGCAGGATCCTGCCAGCACGGGGTTGCCCTCCACCACGCAGCTGCAGTTGGTGTAG
CircID chr11:75193218|75200387
ORF Type ORF12
Protein Length 45
Nucleotide Length 135
Protein Sequence MGRSRPPCSLETAPAQGGHWWERRPVGLAWLPSLRPLAGASSAL*
Nucleotide Sequence ATGGGCAGGAGCAGGCCTCCATGCAGCTTGGAGACAGCTCCAGCCCAGGGTGGGCACTGGTGGGAGAGAAGACCAGTAGGGTTGGCCTGGCTTCCCTCCCTTAGGCCACTAGCTGGGGCATCCTCGGCCCTGTAG
CircID chr11:75193218|75200387
ORF Type ORF13
Protein Length 45
Nucleotide Length 135
Protein Sequence MENWRSRNLGRKVAMPAAMDDKHTWDRTTSRKMGWRRVCSSTLGK
Nucleotide Sequence ATGGAAAACTGGCGCTCCAGGAACTTGGGCAGGAAGGTGGCCATGCCCGCAGCCATGGATGACAAGCATACCTGGGACAGGACCACCAGCAGGAAGATGGGGTGGCGTAGGGTCTGCAGCAGCACCCTGGGGAAG
CircID chr11:75193218|75200387
ORF Type ORF14
Protein Length 39
Nucleotide Length 117
Protein Sequence MWGNDALLAPSLFFSTFSLLPSPCPPPQPRLNLHIDSP*
Nucleotide Sequence ATGTGGGGGAATGATGCTCTCCTGGCTCCCTCCCTCTTCTTCTCTACTTTCTCTCTGCTTCCCTCTCCCTGCCCACCACCTCAGCCCAGGCTCAACTTGCACATAGACAGCCCTTGA
CircID chr11:75193218|75200387
ORF Type ORF15
Protein Length 86
Nucleotide Length 258
Protein Sequence LGLSQAFPAASPWPAACPWRLLKSLPPLPTPGFLHQLQLRGGGQPRAGRILRLNVQPSGGALPAPGQPGLGPGLSHPHTLLHAHPK
Nucleotide Sequence TTGGGCCTCTCACAAGCCTTCCCCGCTGCAAGCCCTTGGCCAGCTGCCTGCCCTTGGAGGCTCTTGAAGTCTCTTCCTCCTCTTCCCACTCCAGGTTTTCTACACCAACTGCAGCTGCGTGGTGGAGGGCAACCCCGTGCTGGCAGGATCCTGCGACTCAACGTGCAGCCATCTGGTGGTGCCCTTCCTGCTCCTGGTCAGCCTGGGCTCGGCCCTGGCCTGTCTCACCCACACACCCTCCTTCATGCTCATCCTAAG
CircID chr11:75193218|75200387
ORF Type ORF16
Protein Length 68
Nucleotide Length 204
Protein Sequence VASWSSGSTWALWDAVPFACWGCCCASSSACRSSLSAAPATRLRASHTRPGRRVTEVQRCLKKLKGL*
Nucleotide Sequence GTGGCGTCCTGGTCAAGCGGCTCCACCTGGGCCCTGTGGGATGCGGTGCCCTTTGCCTGCTGGGGATGCTGCTGTGCCTCTTCTTCAGCCTGCCGCTCTTCTTTATCGGCTGCTCCAGCCACCAGATTGCGGGCATCACACACCAGACCAGGTAGAAGGGTCACTGAGGTGCAGAGATGTTTGAAGAAGCTCAAAGGCTTGTAG
CircID chr11:75193218|75200387
ORF Type ORF17
Protein Length 61
Nucleotide Length 183
Protein Sequence LSRRILPARGCPPPRSCSWCRKPGVGRGGRDFKSLQGQAAGQGLAAGKACERPKFHSQLG*
Nucleotide Sequence TTGAGTCGCAGGATCCTGCCAGCACGGGGTTGCCCTCCACCACGCAGCTGCAGTTGGTGTAGAAAACCTGGAGTGGGAAGAGGAGGAAGAGACTTCAAGAGCCTCCAAGGGCAGGCAGCTGGCCAAGGGCTTGCAGCGGGGAAGGCTTGTGAGAGGCCCAAGTTCCACAGCCAGTTGGGGTAG
CircID chr11:75193218|75200387
ORF Type ORF18
Protein Length 51
Nucleotide Length 153
Protein Sequence VPAPQAVFAQPTGHDLGLPASSTPTGCGTWASHKPSPLQALGQLPALGGS*
Nucleotide Sequence GTGCCTGCTCCTCAAGCCGTCTTTGCTCAGCCAACGGGTCACGATCTCGGACTCCCAGCCAGCTCTACCCCAACTGGCTGTGGAACTTGGGCCTCTCACAAGCCTTCCCCGCTGCAAGCCCTTGGCCAGCTGCCTGCCCTTGGAGGCTCTTGA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
chr11:75193218|75200387 U2AF2 2 0 1
chr11:75193218|75200387 ELAVL1 1 3 1
chr11:75193218|75200387 FAM120A 0 1 0
chr11:75193218|75200387 YTHDF3 1 0 0
chr11:75193218|75200387 PRPF8 0 5 0
chr11:75193218|75200387 TAF15 0 2 0
chr11:75193218|75200387 FUS 0 3 1
chr11:75193218|75200387 GNL3 0 1 0
chr11:75193218|75200387 SRSF1 0 2 6
chr11:75193218|75200387 U2AF1 0 0 2
chr11:75193218|75200387 KHSRP 1 0 0
chr11:75193218|75200387 HNRNPK 0 1 1
chr11:75193218|75200387 PCBP2 1 0 0
chr11:75193218|75200387 SF3A3 0 0 2
chr11:75193218|75200387 FIP1L1 2 0 0
chr11:75193218|75200387 PTBP1 6 5 0
chr11:75193218|75200387 HNRNPC 5 7 2
chr11:75193218|75200387 LIN28B 0 0 2
chr11:75193218|75200387 SND1 2 0 10
chr11:75193218|75200387 IGF2BP1 0 0 8
chr11:75193218|75200387 GTF2F1 0 1 0
chr11:75193218|75200387 IGF2BP3 0 0 3
chr11:75193218|75200387 IGF2BP2 0 1 5
chr11:75193218|75200387 TARDBP 0 0 1
chr11:75193218|75200387 BUD13 1 2 2
chr11:75193218|75200387 RBFOX2 0 0 1
chr11:75193218|75200387 CSTF2T 0 2 0
chr11:75193218|75200387 WDR33 0 1 0
chr11:75193218|75200387 DKC1 0 1 0
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab