CircRNA Information

General Information
circRNA Basic Information
CircID chr11:75404020|75404170
Strand +
CircType exon
Host Gene ENSG00000149273.13;
Algorism CIRI2;
Sequence GTAGTAGTTAACAGGGTCTCCGCTGTGGATCATCAGGCCATCCACAAACTTCATGGATTTAGCCCTCTGTCCTCGGAGTTTCCCAGACACCACAACCTCGCAGCCTTTGGCCCCACTCTCCATGATGAACCGCAGCACACCATAGCAGGCC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr11:75404020|75404170 hsa-miR-10a-5p 0 0 1
chr11:75404020|75404170 hsa-miR-10a-3p 0 0 1
chr11:75404020|75404170 hsa-miR-10b-5p 0 0 1
chr11:75404020|75404170 hsa-miR-10b-3p 0 0 1
chr11:75404020|75404170 hsa-miR-185-5p 0 0 1
chr11:75404020|75404170 hsa-miR-185-3p 0 0 1
chr11:75404020|75404170 hsa-miR-504-5p 0 0 1
chr11:75404020|75404170 hsa-miR-504-3p 0 0 1
chr11:75404020|75404170 hsa-miR-604 1 0 1
chr11:75404020|75404170 hsa-miR-605-5p 0 0 1
chr11:75404020|75404170 hsa-miR-605-3p 0 0 1
chr11:75404020|75404170 hsa-miR-606 0 0 1
chr11:75404020|75404170 hsa-miR-611 0 0 1
chr11:75404020|75404170 hsa-miR-640 0 0 1
chr11:75404020|75404170 hsa-miR-1231 1 0 1
chr11:75404020|75404170 hsa-miR-490-5p 0 0 1
chr11:75404020|75404170 hsa-miR-1274b 0 0 1
chr11:75404020|75404170 hsa-miR-1201 0 0 1
chr11:75404020|75404170 hsa-miR-608 1 0 0
chr11:75404020|75404170 hsa-miR-663a 1 0 0
chr11:75404020|75404170 hsa-miR-762 1 0 0
chr11:75404020|75404170 hsa-miR-1294 1 0 0
chr11:75404020|75404170 hsa-miR-3131 1 1 0
chr11:75404020|75404170 hsa-miR-4314 1 0 0
chr11:75404020|75404170 hsa-miR-1268b 1 0 0
chr11:75404020|75404170 hsa-miR-4463 1 0 0
chr11:75404020|75404170 hsa-miR-4478 1 0 0
chr11:75404020|75404170 hsa-miR-4481 1 0 0
chr11:75404020|75404170 hsa-miR-4489 1 0 0
chr11:75404020|75404170 hsa-miR-2392 1 0 0
chr11:75404020|75404170 hsa-miR-4654 1 0 0
chr11:75404020|75404170 hsa-miR-4656 1 0 0
chr11:75404020|75404170 hsa-miR-4669 1 0 0
chr11:75404020|75404170 hsa-miR-4721 1 0 0
chr11:75404020|75404170 hsa-miR-4734 1 0 0
chr11:75404020|75404170 hsa-miR-5192 1 1 0
chr11:75404020|75404170 hsa-miR-5787 1 0 0
chr11:75404020|75404170 hsa-miR-6068 1 0 0
chr11:75404020|75404170 hsa-miR-6071 1 0 0
chr11:75404020|75404170 hsa-miR-6086 1 0 0
chr11:75404020|75404170 hsa-miR-7974 1 0 0
chr11:75404020|75404170 hsa-miR-8060 0 1 0
chr11:75404020|75404170 hsa-miR-8072 1 0 0
chr11:75404020|75404170 hsa-miR-8089 1 0 0
chr11:75404020|75404170 hsa-miR-9986 1 1 0
chr11:75404020|75404170 hsa-miR-11400 1 0 0
chr11:75404020|75404170 hsa-miR-12115 1 0 0
chr11:75404020|75404170 hsa-miR-134-5p 1 0 0
chr11:75404020|75404170 hsa-miR-4435 1 0 0
chr11:75404020|75404170 hsa-miR-4433b-3p 1 0 0
chr11:75404020|75404170 hsa-miR-92a-2-5p 1 0 0
chr11:75404020|75404170 hsa-miR-128-1-5p 1 0 0
chr11:75404020|75404170 hsa-miR-7155-5p 1 0 0
chr11:75404020|75404170 hsa-miR-6747-5p 1 0 0
chr11:75404020|75404170 hsa-miR-671-5p 1 0 0
chr11:75404020|75404170 hsa-miR-6894-5p 1 0 0
chr11:75404020|75404170 hsa-miR-3926 1 0 0
chr11:75404020|75404170 hsa-miR-1227-5p 1 1 0
chr11:75404020|75404170 hsa-miR-3192-5p 1 0 0
chr11:75404020|75404170 hsa-miR-7160-5p 1 0 0
chr11:75404020|75404170 hsa-miR-6762-3p 1 0 0
chr11:75404020|75404170 hsa-miR-6742-5p 1 0 0
chr11:75404020|75404170 hsa-miR-491-5p 1 0 0
chr11:75404020|75404170 hsa-miR-6716-5p 1 0 0
chr11:75404020|75404170 hsa-miR-3151-5p 1 1 0
chr11:75404020|75404170 hsa-miR-3180-3p 1 0 0
chr11:75404020|75404170 hsa-miR-6748-5p 1 0 0
chr11:75404020|75404170 hsa-miR-6793-5p 1 0 0
chr11:75404020|75404170 hsa-miR-6796-5p 1 0 0
chr11:75404020|75404170 hsa-miR-6829-5p 1 0 0
chr11:75404020|75404170 hsa-miR-6821-5p 1 0 0
chr11:75404020|75404170 hsa-miR-6786-5p 1 0 0
chr11:75404020|75404170 hsa-miR-6740-5p 1 0 0
chr11:75404020|75404170 hsa-miR-4640-5p 1 0 0
chr11:75404020|75404170 hsa-miR-296-3p 1 0 0
chr11:75404020|75404170 hsa-miR-3648 1 0 0
chr11:75404020|75404170 hsa-miR-2681-3p 0 1 0
chr11:75404020|75404170 hsa-miR-6877-5p 1 1 0
chr11:75404020|75404170 hsa-miR-194-3p 1 0 0
chr11:75404020|75404170 hsa-miR-664b-5p 1 1 0
chr11:75404020|75404170 hsa-miR-381-5p 0 1 0
chr11:75404020|75404170 hsa-miR-5004-5p 1 1 0
chr11:75404020|75404170 hsa-miR-6769b-5p 1 0 0
chr11:75404020|75404170 hsa-miR-6812-5p 1 0 0
chr11:75404020|75404170 hsa-miR-6752-5p 1 0 0
chr11:75404020|75404170 hsa-miR-6756-5p 1 1 0
chr11:75404020|75404170 hsa-miR-10401-5p 1 0 0
chr11:75404020|75404170 hsa-miR-1249-5p 1 0 0
chr11:75404020|75404170 hsa-miR-6763-5p 1 0 0
chr11:75404020|75404170 hsa-miR-4728-5p 1 0 0
chr11:75404020|75404170 hsa-miR-10396b-5p 1 0 0
chr11:75404020|75404170 hsa-miR-4632-5p 1 0 0
chr11:75404020|75404170 hsa-miR-4726-5p 1 0 0
chr11:75404020|75404170 hsa-miR-4745-5p 1 1 0
chr11:75404020|75404170 hsa-miR-6735-5p 1 1 0
chr11:75404020|75404170 hsa-miR-6777-5p 1 0 0
chr11:75404020|75404170 hsa-miR-6848-5p 1 0 0
chr11:75404020|75404170 hsa-miR-6883-5p 1 0 0
chr11:75404020|75404170 hsa-miR-6889-5p 1 0 0
chr11:75404020|75404170 hsa-miR-6845-5p 1 1 0
chr11:75404020|75404170 hsa-miR-1238-5p 1 0 0
chr11:75404020|75404170 hsa-miR-4758-5p 1 0 0
chr11:75404020|75404170 hsa-miR-6758-5p 1 0 0
chr11:75404020|75404170 hsa-miR-1914-3p 1 0 0
chr11:75404020|75404170 hsa-miR-4700-5p 1 0 0
chr11:75404020|75404170 hsa-miR-4646-5p 1 1 0
chr11:75404020|75404170 hsa-miR-6785-5p 1 0 0
chr11:75404020|75404170 hsa-miR-3184-5p 1 0 0
chr11:75404020|75404170 hsa-miR-6762-5p 1 1 0
chr11:75404020|75404170 hsa-miR-6884-5p 1 0 0
chr11:75404020|75404170 hsa-miR-128-2-5p 1 0 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr11:75404020|75404170
ORF Type ORF1
Protein Length 28
Nucleotide Length 84
Protein Sequence MSSEFPRHHNLAAFGPTLHDEPQHTIAG
Nucleotide Sequence CTGTCCTCGGAGTTTCCCAGACACCACAACCTCGCAGCCTTTGGCCCCACTCTCCATGATGAACCGCAGCACACCATAGCAGGC
CircID chr11:75404020|75404170
ORF Type ORF2
Protein Length 40
Nucleotide Length 123
Protein Sequence MWIIRPSTNFMDLALCPRSFPDTTTSQPLAPLSMMNRSTP
Nucleotide Sequence CTGTGGATCATCAGGCCATCCACAAACTTCATGGATTTAGCCCTCTGTCCTCGGAGTTTCCCAGACACCACAACCTCGCAGCCTTTGGCCCCACTCTCCATGATGAACCGCAGCACACCATAG
CircID chr11:75404020|75404170
ORF Type ORF3
Protein Length 29
Nucleotide Length 90
Protein Sequence MLWCAAVHHGEWGQRLRGCGVWETPRTEG
Nucleotide Sequence CTGCTATGGTGTGCTGCGGTTCATCATGGAGAGTGGGGCCAAAGGCTGCGAGGTTGTGGTGTCTGGGAAACTCCGAGGACAGAGGGCTAA
CircID chr11:75404020|75404170
ORF Type ORF4
Protein Length 45
Nucleotide Length 135
Protein Sequence MRFIMESGAKGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPVNYY
Nucleotide Sequence CTGCGGTTCATCATGGAGAGTGGGGCCAAAGGCTGCGAGGTTGTGGTGTCTGGGAAACTCCGAGGACAGAGGGCTAAATCCATGAAGTTTGTGGATGGCCTGATGATCCACAGCGGAGACCCTGTTAACTACTAC
CircID chr11:75404020|75404170
ORF Type ORF5
Protein Length 30
Nucleotide Length 93
Protein Sequence MVCCGSSWRVGPKAARLWCLGNSEDRGLNP
Nucleotide Sequence ATGGTGTGCTGCGGTTCATCATGGAGAGTGGGGCCAAAGGCTGCGAGGTTGTGGTGTCTGGGAAACTCCGAGGACAGAGGGCTAAATCCATGA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab