CircRNA Information

General Information
circRNA Basic Information
CircID chr11:75408452|75408659
Strand -
CircType exon
Host Gene
Algorism CIRI2;
Sequence CTGGGTGACAGACCCTGTCTCAAAAAAATAAAAAAAAAACCCAGATTTGCCCCCTCCCTTGTATCTAAGAAGATATGGGAGGCCAGGTGCAGTGGCTCATGTCTGTAATCTTTAGGAGGCTCAAGTGGGAGGTTTTTTTTCTTTTTGAGACAGTCTTGCTCTGTCGCCCAGGCTGGAGTGCAGTAGCACAATCTCAGCTCGCTGCAAC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr11:75408452|75408659 hsa-miR-217-5p 0 0 1
chr11:75408452|75408659 hsa-miR-217-3p 0 0 1
chr11:75408452|75408659 hsa-miR-381-5p 0 0 1
chr11:75408452|75408659 hsa-miR-381-3p 0 0 1
chr11:75408452|75408659 hsa-miR-624-5p 0 0 1
chr11:75408452|75408659 hsa-miR-624-3p 0 0 1
chr11:75408452|75408659 hsa-miR-629-5p 0 0 1
chr11:75408452|75408659 hsa-miR-629-3p 0 0 1
chr11:75408452|75408659 hsa-miR-661 0 0 1
chr11:75408452|75408659 hsa-miR-1301-5p 0 0 1
chr11:75408452|75408659 hsa-miR-1301-3p 0 0 1
chr11:75408452|75408659 hsa-miR-766-5p 0 0 1
chr11:75408452|75408659 hsa-miR-766-3p 0 0 1
chr11:75408452|75408659 hsa-miR-300 0 0 1
chr11:75408452|75408659 hsa-miR-1182 0 0 1
chr11:75408452|75408659 hsa-miR-1321 0 0 1
chr11:75408452|75408659 hsa-miR-129-5p 0 0 1
chr11:75408452|75408659 hsa-miR-532-3p 0 0 1
chr11:75408452|75408659 hsa-miR-508-5p 0 1 1
chr11:75408452|75408659 hsa-miR-509-3-5p 0 0 1
chr11:75408452|75408659 hsa-miR-509-5p 0 0 1
chr11:75408452|75408659 hsa-miR-548d-3p 0 0 1
chr11:75408452|75408659 hsa-miR-371-5p 0 0 1
chr11:75408452|75408659 hsa-miR-218 0 0 1
chr11:75408452|75408659 hsa-miR-1273 0 0 1
chr11:75408452|75408659 hsa-miR-600 1 1 0
chr11:75408452|75408659 hsa-miR-1303 1 0 0
chr11:75408452|75408659 hsa-miR-3159 0 1 0
chr11:75408452|75408659 hsa-miR-3166 1 0 0
chr11:75408452|75408659 hsa-miR-4507 1 0 0
chr11:75408452|75408659 hsa-miR-4512 1 0 0
chr11:75408452|75408659 hsa-miR-4734 1 0 0
chr11:75408452|75408659 hsa-miR-4744 0 1 0
chr11:75408452|75408659 hsa-miR-5684 0 1 0
chr11:75408452|75408659 hsa-miR-7703 0 1 0
chr11:75408452|75408659 hsa-miR-6861-5p 1 0 0
chr11:75408452|75408659 hsa-miR-6720-5p 0 1 0
chr11:75408452|75408659 hsa-miR-1225-3p 1 0 0
chr11:75408452|75408659 hsa-miR-6807-5p 0 1 0
chr11:75408452|75408659 hsa-miR-6849-3p 0 1 0
chr11:75408452|75408659 hsa-miR-6805-5p 0 1 0
chr11:75408452|75408659 hsa-miR-4793-3p 0 1 0
chr11:75408452|75408659 hsa-miR-6765-3p 0 1 0
chr11:75408452|75408659 hsa-miR-4436b-5p 1 0 0
chr11:75408452|75408659 hsa-miR-4717-3p 1 0 0
chr11:75408452|75408659 hsa-miR-6749-5p 1 0 0
chr11:75408452|75408659 hsa-miR-6878-3p 0 1 0
chr11:75408452|75408659 hsa-miR-6804-3p 0 1 0
chr11:75408452|75408659 hsa-miR-4524a-3p 0 1 0
chr11:75408452|75408659 hsa-miR-25-3p 0 1 0
chr11:75408452|75408659 hsa-miR-500a-3p 0 1 0
chr11:75408452|75408659 hsa-miR-4524b-3p 0 1 0
chr11:75408452|75408659 hsa-miR-7107-5p 1 1 0
chr11:75408452|75408659 hsa-miR-6779-5p 1 0 0
chr11:75408452|75408659 hsa-miR-328-5p 1 0 0
chr11:75408452|75408659 hsa-miR-6883-5p 0 1 0
chr11:75408452|75408659 hsa-miR-939-5p 1 0 0
chr11:75408452|75408659 hsa-miR-3940-5p 1 0 0
chr11:75408452|75408659 hsa-miR-1285-3p 0 1 0
chr11:75408452|75408659 hsa-miR-6791-3p 1 0 0
chr11:75408452|75408659 hsa-miR-6877-3p 1 1 0
chr11:75408452|75408659 hsa-miR-324-3p 0 1 0
chr11:75408452|75408659 hsa-miR-6785-5p 0 1 0
chr11:75408452|75408659 hsa-miR-2682-3p 1 0 0
chr11:75408452|75408659 hsa-miR-6829-3p 1 0 0
chr11:75408452|75408659 hsa-miR-3622a-3p 0 1 0
chr11:75408452|75408659 hsa-miR-6823-3p 1 0 0
chr11:75408452|75408659 hsa-miR-4756-5p 0 1 0
chr11:75408452|75408659 hsa-miR-6744-3p 0 1 0
chr11:75408452|75408659 hsa-miR-6781-3p 1 0 0
chr11:75408452|75408659 hsa-miR-3622b-3p 1 0 0
chr11:75408452|75408659 hsa-miR-6807-3p 0 1 0
chr11:75408452|75408659 hsa-miR-514b-5p 0 1 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr11:75408452|75408659
ORF Type ORF1
Protein Length 35
Nucleotide Length 108
Protein Sequence LGDRPCLKKIKKKPRFAPSLVSKKIWEARCSGSCL
Nucleotide Sequence CTGGGTGACAGACCCTGTCTCAAAAAAATAAAAAAAAAACCCAGATTTGCCCCCTCCCTTGTATCTAAGAAGATATGGGAGGCCAGGTGCAGTGGCTCATGTCTGTAA
CircID chr11:75408452|75408659
ORF Type ORF2
Protein Length 44
Nucleotide Length 132
Protein Sequence MGGQVQWLMSVIFRRLKWEVFFLFETVLLCRPGWSAVAQSQLAA
Nucleotide Sequence ATGGGAGGCCAGGTGCAGTGGCTCATGTCTGTAATCTTTAGGAGGCTCAAGTGGGAGGTTTTTTTTCTTTTTGAGACAGTCTTGCTCTGTCGCCCAGGCTGGAGTGCAGTAGCACAATCTCAGCTCGCTGCA
CircID chr11:75408452|75408659
ORF Type ORF3
Protein Length 28
Nucleotide Length 87
Protein Sequence LQRAEIVLLHSSLGDRARLSQKEKKPPT
Nucleotide Sequence TTGCAGCGAGCTGAGATTGTGCTACTGCACTCCAGCCTGGGCGACAGAGCAAGACTGTCTCAAAAAGAAAAAAAACCTCCCACTTGA
CircID chr11:75408452|75408659
ORF Type ORF4
Protein Length 65
Nucleotide Length 195
Protein Sequence MRLCYCTPAWATEQDCLKKKKNLPLEPPKDYRHEPLHLASHIFLDTREGANLGFFFIFLRQGLSP
Nucleotide Sequence CTGAGATTGTGCTACTGCACTCCAGCCTGGGCGACAGAGCAAGACTGTCTCAAAAAGAAAAAAAACCTCCCACTTGAGCCTCCTAAAGATTACAGACATGAGCCACTGCACCTGGCCTCCCATATCTTCTTAGATACAAGGGAGGGGGCAAATCTGGGTTTTTTTTTTATTTTTTTGAGACAGGGTCTGTCACCC
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab