CircRNA Information

General Information
circRNA Basic Information
CircID chr11:75572235|75572437
Strand +
CircType exon
Host Gene ENSG00000149257.12;
Algorism CIRI2;
Sequence CCCCCTAGCTCAATTTGGTCTCACAGGTGAGAAGGTACCTGGCTATAAATATGAATACTGATTGAGGCAGGCTTGATCTGGGACTTTCAGGGCAGGCAGAATGACTATGGCCCAGGTCCCACAGGATGTGGAGTTTCCGGGCTCAGCATCATGGTATCTGGGGCCCATGTCCAAGTGGAGTGAATTCTAGCTGGGAAGGTCCG
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr11:75572235|75572437 hsa-miR-492 0 1 1
chr11:75572235|75572437 hsa-miR-575 0 0 1
chr11:75572235|75572437 hsa-miR-596 1 0 1
chr11:75572235|75572437 hsa-miR-610 0 0 1
chr11:75572235|75572437 hsa-miR-631 0 1 1
chr11:75572235|75572437 hsa-miR-874-5p 0 0 1
chr11:75572235|75572437 hsa-miR-874-3p 0 0 1
chr11:75572235|75572437 hsa-miR-890 0 1 1
chr11:75572235|75572437 hsa-miR-1229-5p 0 0 1
chr11:75572235|75572437 hsa-miR-1229-3p 0 0 1
chr11:75572235|75572437 hsa-miR-1279 0 0 1
chr11:75572235|75572437 hsa-miR-1322 0 0 1
chr11:75572235|75572437 hsa-miR-1225-3p 0 0 1
chr11:75572235|75572437 hsa-miR-769-5p 0 0 1
chr11:75572235|75572437 hsa-miR-296-5p 0 0 1
chr11:75572235|75572437 hsa-miR-146b-3p 0 0 1
chr11:75572235|75572437 hsa-miR-483-3p 0 0 1
chr11:75572235|75572437 hsa-miR-1233 0 0 1
chr11:75572235|75572437 hsa-miR-664 0 0 1
chr11:75572235|75572437 hsa-miR-346 1 0 0
chr11:75572235|75572437 hsa-miR-636 1 0 0
chr11:75572235|75572437 hsa-miR-661 1 0 0
chr11:75572235|75572437 hsa-miR-4330 0 1 0
chr11:75572235|75572437 hsa-miR-3661 0 1 0
chr11:75572235|75572437 hsa-miR-4648 0 1 0
chr11:75572235|75572437 hsa-miR-4654 0 1 0
chr11:75572235|75572437 hsa-miR-4663 0 1 0
chr11:75572235|75572437 hsa-miR-7976 0 1 0
chr11:75572235|75572437 hsa-miR-134-3p 0 1 0
chr11:75572235|75572437 hsa-miR-18a-3p 0 1 0
chr11:75572235|75572437 hsa-miR-128-1-5p 1 0 0
chr11:75572235|75572437 hsa-miR-15a-3p 0 1 0
chr11:75572235|75572437 hsa-miR-6089 1 0 0
chr11:75572235|75572437 hsa-miR-6875-3p 1 0 0
chr11:75572235|75572437 hsa-miR-100-3p 0 1 0
chr11:75572235|75572437 hsa-miR-6882-3p 1 0 0
chr11:75572235|75572437 hsa-miR-4436b-5p 0 1 0
chr11:75572235|75572437 hsa-miR-939-3p 1 0 0
chr11:75572235|75572437 hsa-miR-4763-5p 1 0 0
chr11:75572235|75572437 hsa-miR-6763-3p 1 0 0
chr11:75572235|75572437 hsa-miR-6894-3p 0 1 0
chr11:75572235|75572437 hsa-miR-5001-3p 1 1 0
chr11:75572235|75572437 hsa-miR-3667-3p 1 0 0
chr11:75572235|75572437 hsa-miR-3614-5p 0 1 0
chr11:75572235|75572437 hsa-miR-659-5p 1 1 0
chr11:75572235|75572437 hsa-miR-6861-3p 1 0 0
chr11:75572235|75572437 hsa-miR-4446-5p 1 0 0
chr11:75572235|75572437 hsa-miR-1288-5p 0 1 0
chr11:75572235|75572437 hsa-miR-3940-3p 0 1 0
chr11:75572235|75572437 hsa-miR-2355-5p 0 1 0
chr11:75572235|75572437 hsa-miR-6738-3p 1 1 0
chr11:75572235|75572437 hsa-miR-6734-3p 1 0 0
chr11:75572235|75572437 hsa-miR-4677-3p 0 1 0
chr11:75572235|75572437 hsa-miR-1199-5p 0 1 0
chr11:75572235|75572437 hsa-miR-6724-5p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py


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    by mir_boxplot.py


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    by mir_boxplot.py


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circRNA Open Reading Frame (ORF)
CircID chr11:75572235|75572437
ORF Type ORF1
Protein Length 41
Nucleotide Length 126
Protein Sequence MIEAGLIWDFQGRQNDYGPGPTGCGVSGLSIMVSGAHVQVE
Nucleotide Sequence CTGATTGAGGCAGGCTTGATCTGGGACTTTCAGGGCAGGCAGAATGACTATGGCCCAGGTCCCACAGGATGTGGAGTTTCCGGGCTCAGCATCATGGTATCTGGGGCCCATGTCCAAGTGGAGTGA

CircID chr11:75572235|75572437
ORF Type ORF2
Protein Length 29
Nucleotide Length 90
Protein Sequence MTMAQVPQDVEFPGSASWYLGPMSKWSEF
Nucleotide Sequence ATGACTATGGCCCAGGTCCCACAGGATGTGGAGTTTCCGGGCTCAGCATCATGGTATCTGGGGCCCATGTCCAAGTGGAGTGAATTCTAG

CircID chr11:75572235|75572437
ORF Type ORF3
Protein Length 26
Nucleotide Length 78
Protein Sequence MWSFRAQHHGIWGPCPSGVNSSWEGP
Nucleotide Sequence ATGTGGAGTTTCCGGGCTCAGCATCATGGTATCTGGGGCCCATGTCCAAGTGGAGTGAATTCTAGCTGGGAAGGTCCG

CircID chr11:75572235|75572437
ORF Type ORF4
Protein Length 39
Nucleotide Length 120
Protein Sequence MWDLGHSHSACPESPRSSLPQSVFIFIARYLLTCETKLS
Nucleotide Sequence CTGTGGGACCTGGGCCATAGTCATTCTGCCTGCCCTGAAAGTCCCAGATCAAGCCTGCCTCAATCAGTATTCATATTTATAGCCAGGTACCTTCTCACCTGTGAGACCAAATTGAGCTAG

CircID chr11:75572235|75572437
ORF Type ORF5
Protein Length 43
Nucleotide Length 132
Protein Sequence MDMGPRYHDAEPGNSTSCGTWAIVILPALKVPDQACLNQYSYL
Nucleotide Sequence TTGGACATGGGCCCCAGATACCATGATGCTGAGCCCGGAAACTCCACATCCTGTGGGACCTGGGCCATAGTCATTCTGCCTGCCCTGAAAGTCCCAGATCAAGCCTGCCTCAATCAGTATTCATATTTATAG

RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites