CircRNA Information

General Information
circRNA Basic Information
CircID chr11:77043878|77044067
Strand +
CircType exon
Host Gene
Algorism CIRI2;
Sequence CCCGTGATCCAATCACCTCCCGCCTGTCCAGTCCTACGTGTCCCTCCCCTGACATGTGGGAATTACAATTCAAGATGAGATTTGGGTGGGGAAACAGAGCCAAATCTTATCAGAAAGAGCGGCTCAGAGAGGTGAGATGACCTACTCAAGTTCCAGGAGTGGGAGTGATGGGACTTGCCACGGATTCCCT
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr11:77043878|77044067 hsa-miR-31-5p 0 0 1
chr11:77043878|77044067 hsa-miR-31-3p 0 0 1
chr11:77043878|77044067 hsa-miR-216a-5p 0 0 1
chr11:77043878|77044067 hsa-miR-216a-3p 0 0 1
chr11:77043878|77044067 hsa-miR-760 0 0 1
chr11:77043878|77044067 hsa-miR-1229-5p 0 0 1
chr11:77043878|77044067 hsa-miR-1229-3p 0 0 1
chr11:77043878|77044067 hsa-miR-532-3p 0 1 1
chr11:77043878|77044067 hsa-miR-509-3p 0 0 1
chr11:77043878|77044067 hsa-miR-188-3p 0 1 1
chr11:77043878|77044067 hsa-miR-483-3p 0 0 1
chr11:77043878|77044067 hsa-miR-1260 0 0 1
chr11:77043878|77044067 hsa-miR-219-2-3p 0 0 1
chr11:77043878|77044067 hsa-miR-3183 1 1 0
chr11:77043878|77044067 hsa-miR-3654 0 1 0
chr11:77043878|77044067 hsa-miR-4515 0 1 0
chr11:77043878|77044067 hsa-miR-6127 1 0 0
chr11:77043878|77044067 hsa-miR-6860 0 1 0
chr11:77043878|77044067 hsa-miR-132-5p 0 1 0
chr11:77043878|77044067 hsa-miR-149-5p 0 1 0
chr11:77043878|77044067 hsa-miR-6825-5p 0 1 0
chr11:77043878|77044067 hsa-miR-6799-5p 1 0 0
chr11:77043878|77044067 hsa-miR-3189-5p 1 0 0
chr11:77043878|77044067 hsa-miR-7845-5p 0 1 0
chr11:77043878|77044067 hsa-miR-6884-3p 0 1 0
chr11:77043878|77044067 hsa-miR-7854-3p 0 1 0
chr11:77043878|77044067 hsa-miR-149-3p 1 1 0
chr11:77043878|77044067 hsa-miR-6743-3p 1 1 0
chr11:77043878|77044067 hsa-miR-4762-3p 0 1 0
chr11:77043878|77044067 hsa-miR-4750-5p 1 0 0
chr11:77043878|77044067 hsa-miR-1285-5p 0 1 0
chr11:77043878|77044067 hsa-miR-4433a-5p 1 0 0
chr11:77043878|77044067 hsa-miR-4433b-5p 0 1 0
chr11:77043878|77044067 hsa-miR-2116-3p 0 1 0
chr11:77043878|77044067 hsa-miR-3688-5p 0 1 0
chr11:77043878|77044067 hsa-miR-3156-3p 0 1 0
chr11:77043878|77044067 hsa-miR-4763-3p 1 0 0
chr11:77043878|77044067 hsa-miR-6743-5p 1 0 0
chr11:77043878|77044067 hsa-miR-6756-5p 1 0 0
chr11:77043878|77044067 hsa-miR-1249-5p 0 1 0
chr11:77043878|77044067 hsa-miR-6780a-5p 1 0 0
chr11:77043878|77044067 hsa-miR-6797-5p 1 1 0
chr11:77043878|77044067 hsa-miR-6875-5p 0 1 0
chr11:77043878|77044067 hsa-miR-6879-5p 1 0 0
chr11:77043878|77044067 hsa-miR-7111-5p 1 0 0
chr11:77043878|77044067 hsa-miR-5196-5p 1 0 0
chr11:77043878|77044067 hsa-miR-6795-5p 1 0 0
chr11:77043878|77044067 hsa-miR-6883-5p 0 1 0
chr11:77043878|77044067 hsa-miR-6887-5p 1 0 0
chr11:77043878|77044067 hsa-miR-939-5p 1 0 0
chr11:77043878|77044067 hsa-miR-3116 0 1 0
chr11:77043878|77044067 hsa-miR-6785-5p 0 1 0
chr11:77043878|77044067 hsa-miR-6862-3p 1 0 0
chr11:77043878|77044067 hsa-miR-6805-3p 0 1 0
chr11:77043878|77044067 hsa-miR-4723-3p 0 1 0
chr11:77043878|77044067 hsa-miR-6751-3p 0 1 0
chr11:77043878|77044067 hsa-miR-6769b-3p 0 1 0
chr11:77043878|77044067 hsa-miR-5588-3p 0 1 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr11:77043878|77044067
ORF Type ORF1
Protein Length 38
Nucleotide Length 117
Protein Sequence MSSPTCPSPDMWELQFKMRFGWGNRAKSYQKERLREVR
Nucleotide Sequence CTGTCCAGTCCTACGTGTCCCTCCCCTGACATGTGGGAATTACAATTCAAGATGAGATTTGGGTGGGGAAACAGAGCCAAATCTTATCAGAAAGAGCGGCTCAGAGAGGTGAGATGA
CircID chr11:77043878|77044067
ORF Type ORF2
Protein Length 34
Nucleotide Length 102
Protein Sequence MALFPHPNLILNCNSHMSGEGHVGLDRREVIGSR
Nucleotide Sequence TTGGCTCTGTTTCCCCACCCAAATCTCATCTTGAATTGTAATTCCCACATGTCAGGGGAGGGACACGTAGGACTGGACAGGCGGGAGGTGATTGGATCACGG
CircID chr11:77043878|77044067
ORF Type ORF3
Protein Length 28
Nucleotide Length 87
Protein Sequence MSRSSHLSEPLFLIRFGSVSPPKSHLEL
Nucleotide Sequence TTGAGTAGGTCATCTCACCTCTCTGAGCCGCTCTTTCTGATAAGATTTGGCTCTGTTTCCCCACCCAAATCTCATCTTGAATTGTAA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab