CircRNA Information

General Information
circRNA Basic Information
CircID chr11:93478939|93479094
Strand +
CircType exon
Host Gene ENSG00000166002.5;
Algorism CIRI2;
Sequence AGTGGTGCTGCCCACGCTGGCCGTGGTCGTGCTCTTGATCGTGGTGTTTGTGTACGTGGCCACGCGCCCCACCATCACCGAGTGAGCCCCGCAGCCGGCTGCGGACCCCATCGGCAGGGAGAGGAGGCGCGGGAGGGGGACGCAAACAAAAAATGG
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr11:93478939|93479094 hsa-miR-29a-5p 0 0 1
chr11:93478939|93479094 hsa-miR-29a-3p 0 0 1
chr11:93478939|93479094 hsa-miR-29c-5p 0 0 1
chr11:93478939|93479094 hsa-miR-29c-3p 0 0 1
chr11:93478939|93479094 hsa-miR-335-5p 0 0 1
chr11:93478939|93479094 hsa-miR-335-3p 0 0 1
chr11:93478939|93479094 hsa-miR-588 0 0 1
chr11:93478939|93479094 hsa-miR-604 0 1 1
chr11:93478939|93479094 hsa-miR-541-5p 0 0 1
chr11:93478939|93479094 hsa-miR-541-3p 0 0 1
chr11:93478939|93479094 hsa-miR-744-5p 0 0 1
chr11:93478939|93479094 hsa-miR-744-3p 0 0 1
chr11:93478939|93479094 hsa-miR-1204 0 0 1
chr11:93478939|93479094 hsa-miR-1281 0 1 1
chr11:93478939|93479094 hsa-miR-129-5p 0 0 1
chr11:93478939|93479094 hsa-miR-615-5p 1 1 1
chr11:93478939|93479094 hsa-miR-654-5p 0 0 1
chr11:93478939|93479094 hsa-miR-29b 0 0 1
chr11:93478939|93479094 hsa-miR-638 1 0 0
chr11:93478939|93479094 hsa-miR-663a 1 0 0
chr11:93478939|93479094 hsa-miR-3183 1 0 0
chr11:93478939|93479094 hsa-miR-4734 0 1 0
chr11:93478939|93479094 hsa-miR-5193 0 1 0
chr11:93478939|93479094 hsa-miR-6836-3p 1 0 0
chr11:93478939|93479094 hsa-miR-6089 1 0 0
chr11:93478939|93479094 hsa-miR-6796-5p 1 0 0
chr11:93478939|93479094 hsa-miR-877-3p 0 1 0
chr11:93478939|93479094 hsa-miR-6882-3p 1 0 0
chr11:93478939|93479094 hsa-miR-6786-5p 1 0 0
chr11:93478939|93479094 hsa-miR-939-3p 1 0 0
chr11:93478939|93479094 hsa-miR-6803-3p 1 1 0
chr11:93478939|93479094 hsa-miR-5010-3p 0 1 0
chr11:93478939|93479094 hsa-miR-7113-3p 1 1 0
chr11:93478939|93479094 hsa-miR-6887-3p 0 1 0
chr11:93478939|93479094 hsa-miR-937-3p 1 0 0
chr11:93478939|93479094 hsa-miR-6880-3p 1 1 0
chr11:93478939|93479094 hsa-miR-6734-3p 0 1 0
chr11:93478939|93479094 hsa-miR-10400-5p 1 0 0
chr11:93478939|93479094 hsa-miR-6756-5p 1 0 0
chr11:93478939|93479094 hsa-miR-6819-5p 1 0 0
chr11:93478939|93479094 hsa-miR-10396a-5p 0 1 0
chr11:93478939|93479094 hsa-miR-10396b-5p 1 0 0
chr11:93478939|93479094 hsa-miR-6799-3p 0 1 0
chr11:93478939|93479094 hsa-miR-6791-3p 1 1 0
chr11:93478939|93479094 hsa-miR-6829-3p 0 1 0
chr11:93478939|93479094 hsa-miR-3059-5p 0 1 0
chr11:93478939|93479094 hsa-miR-4701-5p 0 1 0
chr11:93478939|93479094 hsa-miR-6781-3p 1 0 0
chr11:93478939|93479094 hsa-miR-21-3p 0 1 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr11:93478939|93479094
ORF Type ORF1
Protein Length 25
Nucleotide Length 78
Protein Sequence MPTLAVVVLLIVVFVYVATRPTITE
Nucleotide Sequence CTGCCCACGCTGGCCGTGGTCGTGCTCTTGATCGTGGTGTTTGTGTACGTGGCCACGCGCCCCACCATCACCGAGTGA
CircID chr11:93478939|93479094
ORF Type ORF2
Protein Length 36
Nucleotide Length 108
Protein Sequence MCTWPRAPPSPSEPRSRLRTPSAGRGGAGGGRKQKM
Nucleotide Sequence TTGTGTACGTGGCCACGCGCCCCACCATCACCGAGTGAGCCCCGCAGCCGGCTGCGGACCCCATCGGCAGGGAGAGGAGGCGCGGGAGGGGGACGCAAACAAAAAATG
CircID chr11:93478939|93479094
ORF Type ORF3
Protein Length 39
Nucleotide Length 117
Protein Sequence MPMGSAAGCGAHSVMVGRVATYTNTTIKSTTTASVGSTT
Nucleotide Sequence CTGCCGATGGGGTCCGCAGCCGGCTGCGGGGCTCACTCGGTGATGGTGGGGCGCGTGGCCACGTACACAAACACCACGATCAAGAGCACGACCACGGCCAGCGTGGGCAGCACCACT
CircID chr11:93478939|93479094
ORF Type ORF4
Protein Length 48
Nucleotide Length 144
Protein Sequence MRPPPAPPLPADGVRSRLRGSLGDGGARGHVHKHHDQEHDHGQRGQHH
Nucleotide Sequence TTGCGTCCCCCTCCCGCGCCTCCTCTCCCTGCCGATGGGGTCCGCAGCCGGCTGCGGGGCTCACTCGGTGATGGTGGGGCGCGTGGCCACGTACACAAACACCACGATCAAGAGCACGACCACGGCCAGCGTGGGCAGCACCAC
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab